mRNA_H-elongata_contig8236.15891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8236.15891.1
Unique NamemRNA_H-elongata_contig8236.15891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 5.180e-71
Identity = 195/288 (67.71%), Postives = 223/288 (77.43%), Query Frame = 1 
Query:    1 RINPQQVAKGKALAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAFGRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVALLSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEAGGR--VGTVS--KRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGMEIAYGIXXXXXXXXXXXXXXXXXXXXXXXRALLNEMASSG 852
            R++PQ V KGK LA RIK L  A D++G+L ALE+GPKNAIVCTVAI   G+ GKWR A+EV++GMG+ GD  DRPDAF YA+ INACGKAGRPVEAVALL+EMP++ V+PDVVCFG+AI AL EVAGTQN   WG      +D EGGE G +     V+  K  RAHEKA++ IQ+MRR GPSPN QC+ASAITACARA DP +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GME AYG+ XXXXXXXXXXX           +ALLNEM+  G
Sbjct:  180 RLDPQTVEKGKMLAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRK---GAD-EGGEGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERG 463
[Close]
BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.200e-61
Identity = 181/280 (64.64%), Postives = 204/280 (72.86%), Query Frame = 1 
Query:   37 LAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAFGRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVALLSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEAGGRVGTVS--------KRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGMEIAYGIXXXXXXXXXXXXXXXXXXXXXXXRALLNEMASSG 852
            LA RIK L  A D++G+L ALE+GPKNAIVCTVAI   G+ GKWR A+EV++GMG+ G D  RPDAF YA+ INACGKAGRPVEAVALL+EMP++ V+PDVVCFG+AI AL EVAGTQN   WG         EGG        +         K  RAHEKA++ IQ MRR GPSPN QC+ASAITACARA DP +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GME AYG+ XXXXXXXXX             +ALLNEM+  G
Sbjct:    2 LAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGSD--RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKGAN----EGGXXXXXXXDMPMAAAVAGPKPTRAHEKALELIQDMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERG 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB51_ECTSI5.180e-7167.71SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL58_9PHAE1.200e-6164.64SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8236contigH-elongata_contig8236:635..6966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue6.3e-64
Seed eggNOG ortholog2880.D8LB51
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_005200.1
Exons11
Model size1527
Cds size1527
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.0778422-CDS-H-elongata_contig8236:634..7651622931230.0778422-CDS-H-elongata_contig8236:634..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 635..765 +
1691679751.3457642-CDS-H-elongata_contig8236:634..7651691679751.3457642-CDS-H-elongata_contig8236:634..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 635..765 +
1622931230.0928376-CDS-H-elongata_contig8236:1348..15051622931230.0928376-CDS-H-elongata_contig8236:1348..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 1349..1505 +
1691679751.3590465-CDS-H-elongata_contig8236:1348..15051691679751.3590465-CDS-H-elongata_contig8236:1348..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 1349..1505 +
1622931230.1103625-CDS-H-elongata_contig8236:2113..23641622931230.1103625-CDS-H-elongata_contig8236:2113..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 2114..2364 +
1691679751.371221-CDS-H-elongata_contig8236:2113..23641691679751.371221-CDS-H-elongata_contig8236:2113..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 2114..2364 +
1622931230.1272943-CDS-H-elongata_contig8236:3101..32521622931230.1272943-CDS-H-elongata_contig8236:3101..3252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 3102..3252 +
1691679751.3797543-CDS-H-elongata_contig8236:3101..32521691679751.3797543-CDS-H-elongata_contig8236:3101..3252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 3102..3252 +
1622931230.1401732-CDS-H-elongata_contig8236:3617..37481622931230.1401732-CDS-H-elongata_contig8236:3617..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 3618..3748 +
1691679751.3946104-CDS-H-elongata_contig8236:3617..37481691679751.3946104-CDS-H-elongata_contig8236:3617..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 3618..3748 +
1622931230.1580956-CDS-H-elongata_contig8236:4141..42111622931230.1580956-CDS-H-elongata_contig8236:4141..4211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 4142..4211 +
1691679751.4098141-CDS-H-elongata_contig8236:4141..42111691679751.4098141-CDS-H-elongata_contig8236:4141..4211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 4142..4211 +
1622931230.1731298-CDS-H-elongata_contig8236:5011..51831622931230.1731298-CDS-H-elongata_contig8236:5011..5183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 5012..5183 +
1691679751.4205298-CDS-H-elongata_contig8236:5011..51831691679751.4205298-CDS-H-elongata_contig8236:5011..5183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 5012..5183 +
1622931230.1939435-CDS-H-elongata_contig8236:5429..55581622931230.1939435-CDS-H-elongata_contig8236:5429..5558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 5430..5558 +
1691679751.431676-CDS-H-elongata_contig8236:5429..55581691679751.431676-CDS-H-elongata_contig8236:5429..5558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 5430..5558 +
1622931230.2076623-CDS-H-elongata_contig8236:6289..64081622931230.2076623-CDS-H-elongata_contig8236:6289..6408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6290..6408 +
1691679751.4429202-CDS-H-elongata_contig8236:6289..64081691679751.4429202-CDS-H-elongata_contig8236:6289..6408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6290..6408 +
1622931230.2241938-CDS-H-elongata_contig8236:6562..67241622931230.2241938-CDS-H-elongata_contig8236:6562..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6563..6724 +
1691679751.4551637-CDS-H-elongata_contig8236:6562..67241691679751.4551637-CDS-H-elongata_contig8236:6562..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6563..6724 +
1622931230.240927-CDS-H-elongata_contig8236:6912..69661622931230.240927-CDS-H-elongata_contig8236:6912..6966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6913..6966 +
1691679751.466043-CDS-H-elongata_contig8236:6912..69661691679751.466043-CDS-H-elongata_contig8236:6912..6966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8236 6913..6966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8236.15891.1prot_H-elongata_contig8236.15891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8236 635..6966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8236.15891.1

>prot_H-elongata_contig8236.15891.1 ID=prot_H-elongata_contig8236.15891.1|Name=mRNA_H-elongata_contig8236.15891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=509bp
RINPQQVAKGKALAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAF
GRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVAL
LSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEA
GGRVGTVSKRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPS
AALRLMANMREDGVPPNEVVLNAAVDACGKGGAPDEAVKLLHGMEIAYGI
KPNVVSYNSAISALSRAGRAREARALLNEMASSGLKPDKVSFSAAMQGFA
AAGDRKSAASLSTEMKDRGVVMDIVSYGTAVSACGKAGDVDGALRLIKAR
LRNRVLQEMERAGIQANAVVYNAALDACGRSGDQEAAAKILSQMADAGVP
PNATSYTGAIAACSRSGDASKAIEWLETMSREGVPPETICYNYAMTACGR
SGDAGQAMWLLRLMREEGMSPNRISYSAAMFSLGKAGRLQDVLDLLREMH
AEGVEADEV
back to top

mRNA from alignment at H-elongata_contig8236:635..6966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8236.15891.1 ID=mRNA_H-elongata_contig8236.15891.1|Name=mRNA_H-elongata_contig8236.15891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6332bp|location=Sequence derived from alignment at H-elongata_contig8236:635..6966+ (Himanthalia elongata Himel1 dioecious)
CGAATCAACCCTCAACAGGTGGCAAAGGGCAAGGCTCTCGCGGTCAGGAT
CAAGGGACTGGGCCACGCCGGGGACTGGAAGGGTGTCCTGGGGGCGTTGG
AAGATGGCCCTAAGAACGCCATCGTGTGCACGTGCGTGAGCTTAGTCCAA
ATGTCTAAAAAACGTAGCGTAGGAATTGGTTGTAACGGCCGGCGCTCCGC
TCCTCTCCTGTCGAGTCATGTCCTCCATGTCTCTTGCCTTCCGTCGCCGT
ATTTTTAGTGAAGGGATTGAAGATACTCCCTATTACTATACTCTCGTTTG
ACGTCCCCATAGTATGATGACTAATAATCACATAATAGGACGATTTTGTG
CTTAAATGTAGTAAAAATGTCCATATTCAAATCTGACGATAGTTGGTCCC
CTGGACTACACCTCATGGGTGCTAAGAAGGTTTTTTATTGATAATACCAG
TATGACCGTGTGGGTCATTTTGGACATTTTTACTATGAGGTAGGTATTTT
GTGGGAGGCATTTGTGTGAGGTCATGGAAGGAAGTGACTTGAGGAATGCC
GTAATTGACATTATTTTCTCTCACCGGTCGCTTCAAGGCGTAAAAACGTT
TCGGAGGCTGAGACAGTCGAGACCTTATTTACCTTTTTTTGTTTCTCTCT
CTCTCTCTCTCTCTCTCTTTCTCACTGCCTTTACCCCCCTTGCCCCTACC
ACCTCCCTTTTCAGAGTGGCCATCAATGCCTTTGGTCGGATGGGGAAGTG
GCGGTCGGCGATCGAGGTAGTGAATGGCATGGGGGAGGACGGTGACGATT
TCGATCGACCCGACGCCTTCGTATACGCCTCCGCCATCAACGCTTGCGGA
AAGGCCGGGAGGCCGGTAGAGGTTAGCGTTTGCTTCTCGTGGAAGATTCT
TGAGTCTACCCTTTTGGCTCTCATGTGTCGGACAGGGGGTGAGGGGGTGA
AGGCGGCGGGGGAGGGGGGAGGGGTACTCAAGCATTGCGTGCCTTAGCTG
TGATACCATTGAGGAACGGGGTTAATGTTTTCTGGCGCAAACCGCTACCT
ACTTGTTTACGCCCAGTGAAACCTCTACACGGTATATATATATATATATA
TACAATAGTAATGGAAGTAATGTGGTACCTGGCCCAACGCTCAAAGCTCA
ATCGCCCATCTGCCACACTCTAACTGCCGCCGCAGCTGCTTTTGGCGCCC
GCCCGCCAGGACGGGTTAGAGACTAAACTCGCTCATCGCTTTGAACATTA
TTGAAAAAATGAGCCCCGCTGCGGCGATGTGGCTGGCTCTCTTCGCGCAA
CAAATATAACCCATTTTTTGTTTATACGAACGGTTCCCATTATGCATAGA
AACATACATATATTTATATATTTATTTATACTGCATATGCAGATATTATT
ATTTCTAGGCGTCCGATGGAAGCTGTTGAATTAGATCGGCGCCTGTCGAA
TGATATCTCGGGTACGCCCGCGCGCGCAGGCTGTGGCGCTTCTGTCCGAG
ATGCCCTCGAAAGGCGTCGAGCCCGACGTGGTGTGCTTCGGCGCCGCGAT
CGCCGCCCTCAGCGAAGTTGCCGGCACGCAGAACCATATCTTCTGGGGGT
CAAATCCTGTCTTGGCCTCGGATGCCGAGGGCGGGGAGGCGGGAGGTCGA
GTAGGAACAGTCTCGAAGAGATTGCGGGCGCACGAGAAAGCTATGGACTT
TATCCAGAAGATGCGCCGGAACGGGCCGAGGTGTGGGAGAAGGGAGGGGG
GTATTGGTATTGAGGTTCTGCATGCCTTGGCTGTTAAGGCATTGACCACG
CGTCCTCGGGAGGGAGAGGGGAGGGTATTAGAACGGAGATTACCAGCAGT
GTTCTGAATCGCTGATGGCCAATCTTCCCTTCCTACTTATTAACCAAACG
TGGCGCAAACATGTTTTATTACTACGCTGTCTACATCAGTTTTTGCCTTG
TCAGGCCATTTTTTATCCCCCCCCCCATATAGGTACCACCTTCGTCTGAT
TGTCCCAGGCTTCAAAAGTATCTCTGTTACAATCTTCGATTTCCCAATTC
AGTCATAAAATGCCCCTCTCTCTTTTTCATACAAATAACGAAAGCATTCT
GGCCACCCCGTACATGGATACGATCTTCGCACTCTCATCCGAGCTACCAT
CCTTCGTCTGGCTGTCGCAACACCCTGTTATGTTCTGACCGTCTCCCCTT
GAACTCTCTACACTCCCTATAACCCGGCTATCTTTTGACGCGGTTTAAGT
ATTCTCATAGTCCCCAACATTCTCGGTCGTCAGGCGGCATCGCGTTTACA
CCTGCAGGTTGTCCTCCGAGGCCCCTCACACCCTCAACCTCCCCCCCCCT
CAAGGTACACGCCTCATCCCGTGTTGAAGCACCCCCCCCCCCAACCTCCA
CCCTCTCTCACCCCTCGTCGAGCGATACCACGTGGCGTGTGCTGTTTGTT
CTTGTTTTATGACGCAGCCCCAACCAACAGTGCTTCGCGTCTGCCATCAC
CGCCTGCGCAAGGGCGCGAGATCCGAGCGCCGCTCTCAGGCTGATGGCAA
ACATGCGAGAGGACGGCGTGCCCCCGAATGAAGTGGTGCTCAACGCGGCC
GTAGACGCCTGCGGAAAGGTGTGTCCAAGGGCCGGGGTCGAGGGATGGGG
GGTGGTGATTCAATTATCTCACCTGTCGGCCCTGGATGGGATGCTATTTT
AGGCGCACAGTGCCCCCCGACCTCAGGTCGGGGTGGATTATCCTACCCTT
CTACCCGACACCCTTTAGAGGAAGGCCCGGGAAAGAGGGAGACAAGGGTT
TATTTCAATCCTTGAGGCTTTATGAGGTGTCTCGTGCAGGATCCCGCGTG
TTTTACTGTAGACATACTAATAATAGTGCCACATTTCGTTGGACATGTGT
ATTTTGACGATTGTATCCTTGATGTTTGCCTTCCCCTCTCATCTCCCTCT
CCCTCTCATTCCTCTGCGCGTTAATGTCCCCAGGGAGGAGCGCCGGACGA
GGCGGTGAAGCTTCTCCACGGCATGGAAATCGCCTACGGAATAAAACCCA
ATGTCGTTTCATACAACTCCGCCATCTCCGCGCTCTCGAGGGCAGGCCGG
GCTCGAGAGGCCAGGTGCGTGATTCGCGGCGTTTCGAAAGGGGGCAAGAA
GGGAAGATCCTCCGCTTCTTCTCTCGTTCGCCACACGCACGGCTTCGCTA
CGAGGTCCTCTCTCGGCGAGGGGCTGGAGCTGGGGCTGTTGCCAAATCAC
GGCGTGCCCCGAGGCCAATCGGTGCAATCGAACACCCCCAACACCCAGTC
GAGCGATGGCGGCGGTGAACGTCCTTGAGGAAGAAAACGCGTGGTGAATA
ATGCATAATGCGTCGAGCGTCAATTGACATACCTTGTGAAAACCTTTCCG
TCGCGAATGGTTCCGTAATGATTAACACCGTCGCTCCCTCACCCTTCTCT
GTGCTGTGCTGTACTGTACTGTACTGTACTGTACTGTACTGTATATTGCC
TTGTCAGGGCTCTCCTAAACGAGATGGCGTCGAGCGGCCTCAAACCTGAC
AAAGTCAGCTTCTCGGCGGCCATGCAGGTGAACAGTTAACCCCCCACTCT
CACCCCCACCCCCGCCGACGCCACATTTTTTCCTTCAGAATGTTGAGGGC
AGCTACCCCTTCGCAGGACGCCGCAGAGGACTCATCCAATGCGTTTTTTC
GTTGGTTTCTAGCTCGCCGATGTGTCACCATCTAGCGACCAATCGTGCCA
GCACAGGGAGGTCACTTGACTGTACCTTTCGACGGGACTATATGGTGGTG
TTGTACAAGTAGTGTAGTATTATAGTGTGCCGTACTTCAATGTATTTGTT
TCTCCTCTTTCATCCCTCGCTCGATGAATGTGGTGACGAAGGTCAAGGTC
AATGTCAATGTCAATTTCATGACCTATATACCCGCTCGGCTCGCGCTCTT
TATACCCGCCGTCCAGTGTCTGTCTTTATTCCTTCTTCGTCCGGTGGGAG
GGCCACAGAGATTAATTATATTTGATATTTTTATGAGATTTATGAGATTT
GAGATTACCTGAAAGCTTGAGATGGCGATTTGATACTTTTGAGGCTAGAG
ATTATGAAGACTGAGATTGGCGAGAGTCGAGAAGAGATATGGGAGACTAA
TAAATAGCATGGTTAATGAGGCTAGGGATCTGAGGCTGATGTTTTGAGAT
TGGAGGTTGTTATTGAATAGGGCCAGAGGTTGGCCATCAGAGAATCCGAT
ATTTGGGTAAAATAGAAGATCGAGATTTGGGTAATATCTGAGATCGACTT
GAGACGGAATATAATCGAGATAGAGATAGAGAGATGTTGAGGTTTAAAAC
CTCCTCCGATGTGCTCTCTCGCGGCAGGGTTTTGCGGCGGCGGGGGACCG
GAAAAGCGCCGCATCGTTATCGACGGAGATGAAGGACCGCGGCGTTGTCA
TGGACATCGTAAGCTACGGGACCGCGGTCAGCGCTTGTGGCAAAGCCGGG
GACGTCGACGGGGCGCTAAGGCTCATCAAGGCAAGGCTGCGCAATAGGGG
TCAAAGCAACCCAAATCGGAGATTCATCAGGATCTCCTTGTGATCGGATG
AATAAGAGGTCGGCATGGAGTATCGCACGATAGTATTGGGCTCCCCCTCC
CCCGAAAAATATTTAACATTGCGATAAAATAGACATAAAAAAGGGGGTGG
GGGGTTTAAGGGGGATCATCCCCTCATTATTGTCACGCTTATACGGCAGA
GTCGATGACTTGATGGGACCGCGTGCGGTATTTTTATCTTTTGAGTGCTG
CAGGAGATGGAAAGGGCCGGCATACAGGCAAACGCGGTCGTGTACAACGC
CGCGCTCGATGCCTGTGGGAGGTCTGGAGATCAAGAGGCGGCGGCGAAGA
TCCTGTCTCAGATGGCAGATGCCGGTGGGAGATGAAAGGGGGGTTTGCTC
GCGATCGTATCCGAGCCTCACGTCTGTTCTTGCTCTCTGTCTCGCCATTT
TGGTCATTTAGCCTCGAGTCACTGCGAGTCGTTCTCTTGGCACGGCATCG
AACCGCACCGCACCGCACTGCAACTCGCATGACGAAGCGAAGCGGGTGAC
ACAATCGCGCCGAGCGATTGCGCGCGCTTCCCGTGGGATGAATGATGTAT
GTAGTTCGAAAGCAGGAGACGACCCCGCGCCTCTGTTCATCTCCTTTTAT
CCATATATGCTTTATTCGTACTGATTGTTTGCCGAAACGGTTTTTAGAAG
CGGGAGGTACTCGTAAGGGGTGGTGGTGGTGGGGGGAGTTCTAGTCCTCG
GGCCTAAGGACGGAATCGACTAAGATGGGAATGGAGGGGTCATATCTCTC
GCTTGTGGATGCGTATCGTATGTGTGTGTGTGTGTGTGTGTGTGTTTAGT
AAATTGCACATAACCGCAAAATTCGTCATTGTCCCTATACTGTCATCGTT
ATGCTATTATACTCCTTCTAGGCTATTCTCGCATTGGTCCTCCCAATGGG
GTATCAATGATATTTGTTACGAAAACCTCTGATTAGACGAGGTAACGGAG
CATACATGTGTGGATAAATATATGTTTCTGTGTATGTATTATGTTAGTGT
GTGTGGTGTGATCTCATTCTATCTCTACCTCCTTGCCGACAAACAACATG
GACAGGCGTCCCCCCGAACGCTACGAGCTACACGGGAGCTATTGCGGCGT
GCTCCCGCTCTGGCGACGCCTCCAAGGCCATCGAGTGGCTAGAAACCATG
TCCCGAGAAGGCGTGCCGCCGGAGGTAAGTCTATGGCAGCATACCATACC
GTTTGGTATGGTATGGTATGGTTTGGGATGGTTATCTGCCTTTGCTTGAT
GTGTGATGCTTGATTCTTGGGGGGTTTTTTGTCCTCTTTACAGCGTCGCT
TCGTTTTCACTTGTTCTTCACCTTACAGACAATTTGCTATAATTACGCCA
TGACGGCGTGCGGGAGGTCGGGCGACGCTGGACAGGCGATGTGGCTACTG
CGCCTCATGCGGGAGGAGGGGATGTCGCCCAATCGCATCAGCTACAGCGC
GGCCATGTTCTCTCTGGGCAAGGCAGGCCGCCTCCAAGATGTGAGGCGGG
TCAGAGCGCACGCAGAGAGACTCGGGAGGTCGGAGAGAGGGTCCTCATAT
ATATGTACCAGGATAATTTCTGGGGGTACTGCTCCTCCTCTTCCTCTCTT
CCACTATTTCTTCATTTGATATATATATATATATATATATTGTTTGCATT
TTTTTGTAACTGTACGAGGTGAGAGTAGGTGCTCGACCTGCTGAGGGAGA
TGCATGCCGAGGGCGTTGAAGCAGACGAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8236:635..6966+

>mRNA_H-elongata_contig8236.15891.1 ID=mRNA_H-elongata_contig8236.15891.1|Name=mRNA_H-elongata_contig8236.15891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3054bp|location=Sequence derived from alignment at H-elongata_contig8236:635..6966+ (Himanthalia elongata Himel1 dioecious)
CGAATCAACCCTCAACAGGTGGCAAAGGGCAAGGCTCTCGCGGTCAGGAT
CAAGGGACTGGGCCACGCCGGGGACTGGAAGGGTGTCCTGGGGGCGTTGG
AAGATGGCCCTAAGAACGCCATCGTGTGCACCGAATCAACCCTCAACAGG
TGGCAAAGGGCAAGGCTCTCGCGGTCAGGATCAAGGGACTGGGCCACGCC
GGGGACTGGAAGGGTGTCCTGGGGGCGTTGGAAGATGGCCCTAAGAACGC
CATCGTGTGCACAGTGGCCATCAATGCCTTTGGTCGGATGGGGAAGTGGC
GGTCGGCGATCGAGGTAGTGAATGGCATGGGGGAGGACGGTGACGATTTC
GATCGACCCGACGCCTTCGTATACGCCTCCGCCATCAACGCTTGCGGAAA
GGCCGGGAGGCCGGTAGAGAGTGGCCATCAATGCCTTTGGTCGGATGGGG
AAGTGGCGGTCGGCGATCGAGGTAGTGAATGGCATGGGGGAGGACGGTGA
CGATTTCGATCGACCCGACGCCTTCGTATACGCCTCCGCCATCAACGCTT
GCGGAAAGGCCGGGAGGCCGGTAGAGGCTGTGGCGCTTCTGTCCGAGATG
CCCTCGAAAGGCGTCGAGCCCGACGTGGTGTGCTTCGGCGCCGCGATCGC
CGCCCTCAGCGAAGTTGCCGGCACGCAGAACCATATCTTCTGGGGGTCAA
ATCCTGTCTTGGCCTCGGATGCCGAGGGCGGGGAGGCGGGAGGTCGAGTA
GGAACAGTCTCGAAGAGATTGCGGGCGCACGAGAAAGCTATGGACTTTAT
CCAGAAGATGCGCCGGAACGGGCCGAGGCTGTGGCGCTTCTGTCCGAGAT
GCCCTCGAAAGGCGTCGAGCCCGACGTGGTGTGCTTCGGCGCCGCGATCG
CCGCCCTCAGCGAAGTTGCCGGCACGCAGAACCATATCTTCTGGGGGTCA
AATCCTGTCTTGGCCTCGGATGCCGAGGGCGGGGAGGCGGGAGGTCGAGT
AGGAACAGTCTCGAAGAGATTGCGGGCGCACGAGAAAGCTATGGACTTTA
TCCAGAAGATGCGCCGGAACGGGCCGAGCCCCAACCAACAGTGCTTCGCG
TCTGCCATCACCGCCTGCGCAAGGGCGCGAGATCCGAGCGCCGCTCTCAG
GCTGATGGCAAACATGCGAGAGGACGGCGTGCCCCCGAATGAAGTGGTGC
TCAACGCGGCCGTAGACGCCTGCGGAAAGCCCCAACCAACAGTGCTTCGC
GTCTGCCATCACCGCCTGCGCAAGGGCGCGAGATCCGAGCGCCGCTCTCA
GGCTGATGGCAAACATGCGAGAGGACGGCGTGCCCCCGAATGAAGTGGTG
CTCAACGCGGCCGTAGACGCCTGCGGAAAGGGAGGAGCGCCGGACGAGGC
GGTGAAGCTTCTCCACGGCATGGAAATCGCCTACGGAATAAAACCCAATG
TCGTTTCATACAACTCCGCCATCTCCGCGCTCTCGAGGGCAGGCCGGGCT
CGAGAGGCCAGGGAGGAGCGCCGGACGAGGCGGTGAAGCTTCTCCACGGC
ATGGAAATCGCCTACGGAATAAAACCCAATGTCGTTTCATACAACTCCGC
CATCTCCGCGCTCTCGAGGGCAGGCCGGGCTCGAGAGGCCAGGGCTCTCC
TAAACGAGATGGCGTCGAGCGGCCTCAAACCTGACAAAGTCAGCTTCTCG
GCGGCCATGCAGGGCTCTCCTAAACGAGATGGCGTCGAGCGGCCTCAAAC
CTGACAAAGTCAGCTTCTCGGCGGCCATGCAGGGTTTTGCGGCGGCGGGG
GACCGGAAAAGCGCCGCATCGTTATCGACGGAGATGAAGGACCGCGGCGT
TGTCATGGACATCGTAAGCTACGGGACCGCGGTCAGCGCTTGTGGCAAAG
CCGGGGACGTCGACGGGGCGCTAAGGCTCATCAAGGCAAGGCTGCGCAAT
AGGGGGTTTTGCGGCGGCGGGGGACCGGAAAAGCGCCGCATCGTTATCGA
CGGAGATGAAGGACCGCGGCGTTGTCATGGACATCGTAAGCTACGGGACC
GCGGTCAGCGCTTGTGGCAAAGCCGGGGACGTCGACGGGGCGCTAAGGCT
CATCAAGGCAAGGCTGCGCAATAGGGTGCTGCAGGAGATGGAAAGGGCCG
GCATACAGGCAAACGCGGTCGTGTACAACGCCGCGCTCGATGCCTGTGGG
AGGTCTGGAGATCAAGAGGCGGCGGCGAAGATCCTGTCTCAGATGGCAGA
TGCCGTGCTGCAGGAGATGGAAAGGGCCGGCATACAGGCAAACGCGGTCG
TGTACAACGCCGCGCTCGATGCCTGTGGGAGGTCTGGAGATCAAGAGGCG
GCGGCGAAGATCCTGTCTCAGATGGCAGATGCCGGCGTCCCCCCGAACGC
TACGAGCTACACGGGAGCTATTGCGGCGTGCTCCCGCTCTGGCGACGCCT
CCAAGGCCATCGAGTGGCTAGAAACCATGTCCCGAGAAGGCGTGCCGCCG
GAGGCGTCCCCCCGAACGCTACGAGCTACACGGGAGCTATTGCGGCGTGC
TCCCGCTCTGGCGACGCCTCCAAGGCCATCGAGTGGCTAGAAACCATGTC
CCGAGAAGGCGTGCCGCCGGAGACAATTTGCTATAATTACGCCATGACGG
CGTGCGGGAGGTCGGGCGACGCTGGACAGGCGATGTGGCTACTGCGCCTC
ATGCGGGAGGAGGGGATGTCGCCCAATCGCATCAGCTACAGCGCGGCCAT
GTTCTCTCTGGGCAAGGCAGGCCGCCTCCAAGATACAATTTGCTATAATT
ACGCCATGACGGCGTGCGGGAGGTCGGGCGACGCTGGACAGGCGATGTGG
CTACTGCGCCTCATGCGGGAGGAGGGGATGTCGCCCAATCGCATCAGCTA
CAGCGCGGCCATGTTCTCTCTGGGCAAGGCAGGCCGCCTCCAAGATGTGC
TCGACCTGCTGAGGGAGATGCATGCCGAGGGCGTTGAAGCAGACGAGGTG
GTGCTCGACCTGCTGAGGGAGATGCATGCCGAGGGCGTTGAAGCAGACGA
GGTG
back to top