mRNA_H-elongata_contig82310.15887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82310.15887.1
Unique NamemRNA_H-elongata_contig82310.15887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 189 bits (479), Expect = 2.030e-52
Identity = 85/153 (55.56%), Postives = 112/153 (73.20%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGPLCY 498
            LP  FW LHTS NLSA+G   RP+A G + RR++G V CR+Y   LA++F+P GQYGVAV GG +++A  A L  + G  +L+YD +NAFNS+ R   LPAL +++P M+PYA+N+YAREPPKL++  D G + V+ SA GVQQ CNLGPLCY
Sbjct: 1211 LPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCY 1362          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.360e-46
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.850e-45
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +  Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:   23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.440e-44
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.840e-44
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FC +Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.110e-44
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.190e-42
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQ 471
            LP +FW   TS +LSALG   RP+A GGVLRR+I   FCR+Y + +AD F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NSI R   L A+    P +V Y  NLYAR   KL+F ++ G +E+V S R VQQ
Sbjct:   23 LPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.290e-42
Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
            LP   W LHTS NLSALG   RP+A GGVLRR+I   F R+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+  + P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:   23 LPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.370e-26
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVI------------GAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPAL 345
            LP +FW LHTS +LSALG   RP+A GGVLRR+I               FCR+Y + +AD F+   Q+G  V GGV+I+A TA    + G TILS+DG+NA+NSI R   L A+
Sbjct:   23 LPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAV 136          
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.300e-23
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   43 PQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGP 489
            P  FWTL   ++L ALG   RPV  G   RR+I A   R +  KL + F+   Q+GVAV+GGV+ +A+ A L  + G  ++  D  NAFN+  R   +    + VP +V Y +  Y   P K I+ +D G    +E   GVQQ   +GP
Sbjct:   60 PPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGP 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN2.030e-5255.56Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE1.360e-4653.69Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE3.850e-4553.02Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCM0_9PHAE2.440e-4453.69Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE2.840e-4453.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LN63_9PHAE3.110e-4453.69Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3H3_9PHAE1.190e-4250.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H0_9PHAE1.290e-4252.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQE6_9PHAE4.370e-2648.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L4Y4_9PHAE1.300e-2337.58Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82310contigH-elongata_contig82310:2054..2551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.8875608-CDS-H-elongata_contig82310:2053..25511622931229.8875608-CDS-H-elongata_contig82310:2053..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82310 2054..2551 +
1691679751.3014948-CDS-H-elongata_contig82310:2053..25511691679751.3014948-CDS-H-elongata_contig82310:2053..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82310 2054..2551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82310.15887.1prot_H-elongata_contig82310.15887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82310 2054..2551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82310.15887.1

>prot_H-elongata_contig82310.15887.1 ID=prot_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
LAAFATLVCFSRVLPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAV
FCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQ
NAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVE
SARGVQQRCNLGPLCY
back to top

mRNA from alignment at H-elongata_contig82310:2054..2551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82310.15887.1 ID=mRNA_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig82310:2054..2551+ (Himanthalia elongata Himel1 dioecious)
CTCGCGGCGTTCGCGACGCTTGTTTGTTTCAGCCGCGTTTTGCCCCAAGT ATTCTGGACACTGCACACGAGCACCAACCTTTCCGCGCTGGGGCGAAATG CGAGACCAGTGGCGTGCGGAGGTGTCTTGCGGAGAGTTATTGGTGCTGTT TTCTGCCGCCGATACGACAGGAAGCTGGCAGACTACTTCCAGCCCTGGGG GCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGATATAATGGCACTCACAG CAATACTGGAGTTCGAAGATGGTTGCACCATTCTCTCATACGACGGACAA AACGCCTTCAACAGTATATACCGCCTCGGGTTCCTGCCCGCGCTAGTGGA AATTGTTCCCTCAATGGTCCCCTACGCATCTAACTTGTACGCAAGGGAAC CCCCAAAGCTCATCTTTGCACTAGATGGCGGAGGTTTGGAAGTGGTTGAA TCAGCGCGAGGAGTACAGCAAAGGTGTAATCTAGGCCCACTTTGCTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig82310:2054..2551+

>mRNA_H-elongata_contig82310.15887.1 ID=mRNA_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig82310:2054..2551+ (Himanthalia elongata Himel1 dioecious)
CTCGCGGCGTTCGCGACGCTTGTTTGTTTCAGCCGCGTTTTGCCCCAAGT
ATTCTGGACACTGCACACGAGCACCAACCTTTCCGCGCTGGGGCGAAATG
CGAGACCAGTGGCGTGCGGAGGTGTCTTGCGGAGAGTTATTGGTGCTGTT
TTCTGCCGCCGATACGACAGGAAGCTGGCAGACTACTTCCAGCCCTGGGG
GCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGATATAATGGCACTCACAG
CAATACTGGAGTTCGAAGATGGTTGCACCATTCTCTCATACGACGGACAA
AACGCCTTCAACAGTATATACCGCCTCGGGTTCCTGCCCGCGCTAGTGGA
AATTGTTCCCTCAATGGTCCCCTACGCATCTAACTTGTACGCAAGGGAAC
CCCCAAAGCTCATCTTTGCACTAGATGGCGGAGGTTTGGAAGTGGTTGAA
TCAGCGCGAGGAGTACAGCAAAGGTGTAATCTAGGCCCACTTTGCTACCT
CGCGGCGTTCGCGACGCTTGTTTGTTTCAGCCGCGTTTTGCCCCAAGTAT
TCTGGACACTGCACACGAGCACCAACCTTTCCGCGCTGGGGCGAAATGCG
AGACCAGTGGCGTGCGGAGGTGTCTTGCGGAGAGTTATTGGTGCTGTTTT
CTGCCGCCGATACGACAGGAAGCTGGCAGACTACTTCCAGCCCTGGGGGC
AGTACGGCGTAGCAGTTTCAGGTGGAGTAGATATAATGGCACTCACAGCA
ATACTGGAGTTCGAAGATGGTTGCACCATTCTCTCATACGACGGACAAAA
CGCCTTCAACAGTATATACCGCCTCGGGTTCCTGCCCGCGCTAGTGGAAA
TTGTTCCCTCAATGGTCCCCTACGCATCTAACTTGTACGCAAGGGAACCC
CCAAAGCTCATCTTTGCACTAGATGGCGGAGGTTTGGAAGTGGTTGAATC
AGCGCGAGGAGTACAGCAAAGGTGTAATCTAGGCCCACTTTGCTAC
back to top