mRNA_H-elongata_contig82273.15883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82273.15883.1
Unique NamemRNA_H-elongata_contig82273.15883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.100e-21
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            VTMQMVRDILMYMDRT+V+FN KMPVYEMGLVVFRDTVARH KVK RLQ LLLQ
Sbjct:  107 VTMQMVRDILMYMDRTYVSFNKKMPVYEMGLVVFRDTVARHDKVKGRLQSLLLQ 160
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A7S2BUF6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUF6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.120e-15
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 TMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            TM MVRDILMYMDRT+VA N K+ VY++GL++FRDTVARH +VK RL+ +LL+
Sbjct:    1 TMMMVRDILMYMDRTYVAQNKKVAVYDLGLIIFRDTVARHEQVKDRLRHILLE 53
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A067CH64_SAPPC (CULLIN_2 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CH64_SAPPC)

HSP 1 Score: 73.2 bits (178), Expect = 8.660e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            +TM M+RDILMYMDRT+V    K+P+Y+MGL++FRDT+ARH  VK RL+ +LLQ
Sbjct:  107 ITMTMIRDILMYMDRTYVPGKRKVPIYDMGLLLFRDTIARHPNVKDRLRWMLLQ 160
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A485KXF9_9STRA (Aste57867_12984 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXF9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.660e-14
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            +TM M+RDILMYMDRT+VA   KMP+Y+MGLV+FRD++ RH +VK RL+  LLQ
Sbjct:  107 ITMTMIRDILMYMDRTYVAQKRKMPIYDMGLVLFRDSIVRHPQVKDRLKWHLLQ 160
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A6G0XWZ6_9STRA (CULLIN_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWZ6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.210e-13
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            +TM M+RDILMYMDRT+V+   KMP+Y+MGLV+FRD++ RH +VK RL+  LLQ
Sbjct:  107 ITMTMIRDILMYMDRTYVSQKRKMPIYDMGLVLFRDSIVRHPQVKDRLKWHLLQ 160
[Close]
BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A4D9CTV1_9STRA (CULLIN_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTV1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.440e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLL 159
            VTM MVRDILMYMDRT+V  +NK  VY++GL +FRD +ARH +VK RL+ LLL
Sbjct:   89 VTMSMVRDILMYMDRTYVPQHNKTKVYDLGLRIFRDAIARHPQVKDRLRSLLL 141
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A7S2W0A7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0A7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.440e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 TMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            TM MVRDILMYMDRTFVA   + PVY MGL++FR+T+ RH +V+ RL+++LL+
Sbjct:  107 TMVMVRDILMYMDRTFVAQQKRTPVYAMGLILFRETIERHPQVRDRLRQILLE 159
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A1V9ZID9_9STRA (Transmembrane protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZID9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.680e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            VTM M+RDILMYMDRT+V    K+P+Y+MG ++FRD +ARH  VK RL+ +LLQ
Sbjct:  114 VTMTMIRDILMYMDRTYVPGKRKVPIYDMGQLLFRDLIARHPDVKDRLRWILLQ 167
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BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A835Z7J2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.360e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VTMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLLQ 162
            VTM M+RDILMYMDRT+V   N+M VY++GL +FRD + RH KV+ RL+ LLL+
Sbjct:  109 VTMVMIRDILMYMDRTYVKQMNRMLVYDLGLQIFRDAIVRHDKVRDRLRALLLR 162
[Close]
BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Match: A0A7S3NMJ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMJ6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.370e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 TMQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLLL 159
            TM+M+RDILMYMDRTF   N K+ VY+MGLV FR  V RH ++  RLQ LLL
Sbjct:  156 TMEMIRDILMYMDRTFATQNKKLQVYDMGLVEFRSAVTRHEEIGPRLQALLL 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82273.15883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT61_ECTSI3.100e-2188.89CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2BUF6_9STRA7.120e-1567.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CH64_SAPPC8.660e-1462.96CULLIN_2 domain-containing protein n=3 Tax=Saprole... [more]
A0A485KXF9_9STRA8.660e-1464.81Aste57867_12984 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XWZ6_9STRA2.210e-1362.96CULLIN_2 domain-containing protein n=1 Tax=Aphanom... [more]
A0A4D9CTV1_9STRA1.440e-1266.04CULLIN_2 domain-containing protein n=2 Tax=Monodop... [more]
A0A7S2W0A7_9STRA1.440e-1262.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZID9_9STRA3.680e-1261.11Transmembrane protein (Fragment) n=1 Tax=Thraustot... [more]
A0A835Z7J2_9STRA9.360e-1261.11Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S3NMJ6_9STRA9.370e-1263.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82273contigH-elongata_contig82273:111..272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D7FT61
Preferred nameCUL3
KEGG koko:K03869
KEGG Pathwayko04120,ko04340,ko04341,map04120,map04340,map04341
KEGG ModuleM00384
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000122,GO:0000151,GO:0000165,GO:0000209,GO:0000278,GO:0000280,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0001654,GO:0001701,GO:0001709,GO:0001745,GO:0001824,GO:0001825,GO:0001829,GO:0001831,GO:0001889,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005819,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005929,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006915,GO:0006919,GO:0006928,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007050,GO:0007059,GO:0007080,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007229,GO:0007267,GO:0007275,GO:0007276,GO:0007277,GO:0007278,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007346,GO:0007349,GO:0007369,GO:0007399,GO:0007409,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009896,GO:0009909,GO:0009911,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010927,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012501,GO:0012505,GO:0015630,GO:0016043,GO:0016050,GO:0016055,GO:0016192,GO:0016310,GO:0016358,GO:0016477,GO:0016567,GO:0016740,GO:0017145,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019904,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030030,GO:0030036,GO:0030038,GO:0030071,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030178,GO:0030182,GO:0030239,GO:0030332,GO:0030431,GO:0031032,GO:0031033,GO:0031034,GO:0031145,GO:0031175,GO:0031208,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031463,GO:0031514,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034622,GO:0035023,GO:0035024,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035966,GO:0035967,GO:0036126,GO:0036211,GO:0040011,GO:0040016,GO:0042127,GO:0042221,GO:0042692,GO:0042749,GO:0042752,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043149,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044346,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045165,GO:0045187,GO:0045475,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045931,GO:0045934,GO:0046578,GO:0046580,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048599,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048812,GO:0048813,GO:0048831,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051017,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055001,GO:0055002,GO:0060255,GO:0060429,GO:0060562,GO:0060828,GO:0061008,GO:0061024,GO:0061061,GO:0061564,GO:0061572,GO:0061630,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0070925,GO:0071218,GO:0071310,GO:0071630,GO:0071688,GO:0071704,GO:0071840,GO:0072576,GO:0080090,GO:0090068,GO:0090090,GO:0090114,GO:0090596,GO:0097190,GO:0097193,GO:0097223,GO:0097435,GO:0097729,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036,GO:0120039,GO:0140014,GO:0140096,GO:0198738,GO:1901044,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903364,GO:1903506,GO:1903507,GO:1905114,GO:1905818,GO:1905820,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2000116,GO:2000241,GO:2000243,GO:2001056,GO:2001141,GO:2001252
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.5054042-UTR-H-elongata_contig82273:110..1161622931229.5054042-UTR-H-elongata_contig82273:110..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82273 111..116 +
1691679751.1221588-UTR-H-elongata_contig82273:110..1161691679751.1221588-UTR-H-elongata_contig82273:110..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82273 111..116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.5352669-CDS-H-elongata_contig82273:116..2721622931229.5352669-CDS-H-elongata_contig82273:116..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82273 117..272 +
1691679751.148348-CDS-H-elongata_contig82273:116..2721691679751.148348-CDS-H-elongata_contig82273:116..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82273 117..272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82273.15883.1prot_H-elongata_contig82273.15883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82273 117..272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82273.15883.1

>prot_H-elongata_contig82273.15883.1 ID=prot_H-elongata_contig82273.15883.1|Name=mRNA_H-elongata_contig82273.15883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MQMVRDILMYMDRTFVAFNNKMPVYEMGLVVFRDTVARHYKVKARLQRLL
LQ
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mRNA from alignment at H-elongata_contig82273:111..272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82273.15883.1 ID=mRNA_H-elongata_contig82273.15883.1|Name=mRNA_H-elongata_contig82273.15883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig82273:111..272+ (Himanthalia elongata Himel1 dioecious)
GTGACGATGCAAATGGTCCGCGACATCTTGATGTACATGGACCGCACCTT
CGTCGCCTTCAACAATAAAATGCCCGTCTACGAGATGGGCCTTGTGGTGT
TTCGGGACACGGTAGCACGGCACTATAAGGTCAAGGCACGACTCCAGCGC
TTGCTTCTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig82273:111..272+

>mRNA_H-elongata_contig82273.15883.1 ID=mRNA_H-elongata_contig82273.15883.1|Name=mRNA_H-elongata_contig82273.15883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig82273:111..272+ (Himanthalia elongata Himel1 dioecious)
ATGCAAATGGTCCGCGACATCTTGATGTACATGGACCGCACCTTCGTCGC
CTTCAACAATAAAATGCCCGTCTACGAGATGGGCCTTGTGGTGTTTCGGG
ACACGGTAGCACGGCACTATAAGGTCAAGGCACGACTCCAGCGCTTGCTT
CTTCAGATGCAAATGGTCCGCGACATCTTGATGTACATGGACCGCACCTT
CGTCGCCTTCAACAATAAAATGCCCGTCTACGAGATGGGCCTTGTGGTGT
TTCGGGACACGGTAGCACGGCACTATAAGGTCAAGGCACGACTCCAGCGC
TTGCTTCTTCAG
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