mRNA_H-elongata_contig82208.15879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82208.15879.1
Unique NamemRNA_H-elongata_contig82208.15879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: D8LU42_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU42_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 3.820e-61
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 VFKAPCGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATAT 345
            + KAPCGGIPAAH+TSATP+  +KQIYKDL RAD+ REP++KLLYVTPERLGNSDSMLDFM RL+D+GMLARFVIDEAHCVSSWGHDFRPDYSKLG  KKTFP+VP+IALTATAT
Sbjct:  280 LLKAPCGGIPAAHLTSATPTTAIKQIYKDLGRADRDREPSVKLLYVTPERLGNSDSMLDFMHRLNDKGMLARFVIDEAHCVSSWGHDFRPDYSKLGYFKKTFPNVPIIALTATAT 394          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A835YHS9_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHS9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.910e-44
Identity = 75/113 (66.37%), Postives = 89/113 (78.76%), Query Frame = 1
Query:   16 CGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            CGGIPAA +TSAT  V+  QI++DL R + G EP +KLLYVTPER+  S    D MR L +QGMLARFVIDEAHCVS WGHDFR DY KLG++K+TFP VP +A+TATATP+V
Sbjct:   94 CGGIPAAALTSATAPVMSHQIHQDLLRCESGVEPVLKLLYVTPERVAKSGRFFDVMRSLDEQGMLARFVIDEAHCVSQWGHDFRQDYLKLGVLKQTFPHVPTLAVTATATPKV 206          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A5D6YCC8_9STRA (ATP-dependent DNA helicase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCC8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.570e-37
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   22 GIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            GIPA +++S T   L + I ++L R    + P++KLLYVTPE+LGNS  M+D +  LH  GMLARFVIDEAHCVS WGHDFRPDY KLGL+K  FPDVP++ALTATA P+V
Sbjct:  258 GIPAGYLSSQTGITLRRAIVQELRR----KRPSLKLLYVTPEKLGNSAEMIDLLELLHGNGMLARFVIDEAHCVSQWGHDFRPDYMKLGLLKTRFPDVPLMALTATAPPKV 364          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A2D4CBX1_PYTIN (ATP-dependent DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBX1_PYTIN)

HSP 1 Score: 141 bits (355), Expect = 6.410e-37
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 VFKAPCGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            + + P  GIPAA ++S T   L + I ++L    +GR PT+KLLYVTPE++  S+ M+  M+ L+  GMLARFVIDEAHCVS WGHDFRPDYSKLGL+K  FPDVP++ALTATA P+V
Sbjct:  237 LIRNPLCGIPAAFLSSQTGITLHRAIAREL----RGRFPTLKLLYVTPEKIAKSEEMMSLMQGLYANGMLARFVIDEAHCVSQWGHDFRPDYSKLGLLKDEFPDVPLMALTATAPPKV 350          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A8K1CM96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM96_PYTOL)

HSP 1 Score: 140 bits (353), Expect = 8.690e-37
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   22 GIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            GIPAA ++S T   L + I ++L R      P++KLLYVTPE++  S+ M++ M+ LH  GMLARFVIDEAHCVS WGHDFRPDYSKLG++K TFP+VP++ALTATA P+V
Sbjct:  228 GIPAAFLSSQTSMTLKRAIVRELRRP----RPSLKLLYVTPEKIAKSEEMMELMQILHSNGMLARFVIDEAHCVSQWGHDFRPDYSKLGILKATFPEVPLMALTATAPPKV 334          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A2D4CC22_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC22_PYTIN)

HSP 1 Score: 141 bits (355), Expect = 1.550e-36
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 VFKAPCGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            + + P  GIPAA ++S T   L + I ++L    +GR PT+KLLYVTPE++  S+ M+  M+ L+  GMLARFVIDEAHCVS WGHDFRPDYSKLGL+K  FPDVP++ALTATA P+V
Sbjct: 2028 LIRNPLCGIPAAFLSSQTGITLHRAIAREL----RGRFPTLKLLYVTPEKIAKSEEMMSLMQGLYANGMLARFVIDEAHCVSQWGHDFRPDYSKLGLLKDEFPDVPLMALTATAPPKV 2141          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A4D9D6U8_9STRA (ATP-dependent DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6U8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.050e-36
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   25 IPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            IPAA + S TP  L + IY+DL     GREP IKLLYVTPERL   +     ++ LH+ GMLAR V+DEAHCVS WGHDFRPD+ +LG  +K FP +P++ALTATAT EV
Sbjct:   45 IPAAVLNSTTPETLARGIYRDLGSVRMGREPAIKLLYVTPERLLGPEGFKQLVKTLHEHGMLARLVVDEAHCVSQWGHDFRPDFYRLGEFRKQFPSIPIMALTATATDEV 154          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A6G0XAI7_9STRA (ATP-dependent DNA helicase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAI7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.450e-36
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   22 GIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATA 342
            GIPAA+++S T   L+K ++KDL R      PTIKLLYVTPE+L  S S++  +  L+ +GMLARFVIDEAHCV+ WGHDFRPDY+KLG +K+ FPDVPV+ALTATA
Sbjct:   96 GIPAAYLSSQTAQKLIKAVWKDLHRP----VPTIKLLYVTPEKLAASSSLIAMLEDLNRRGMLARFVIDEAHCVTQWGHDFRPDYNKLGRLKELFPDVPVMALTATA 198          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: K3WD55_GLOUD (ATP-dependent DNA helicase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WD55_GLOUD)

HSP 1 Score: 139 bits (349), Expect = 5.580e-36
Identity = 68/118 (57.63%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 VFKAPCGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATATPEV 354
            + + P  GIPA +++S T   L + I ++L R     +P++KLLYVTPE+LGNS  M++ +  LH  GMLARFVIDEAHCVS WGHDFRPDY KLG++K  FPDVP++ALTATA P+V
Sbjct:  289 LIRNPRCGIPAGYLSSQTGITLRRAITQELKR----NKPSLKLLYVTPEKLGNSAEMIELLEILHHNGMLARFVIDEAHCVSQWGHDFRPDYMKLGMLKTRFPDVPLMALTATAPPKV 402          
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Match: A0A1V9ZHY8_9STRA (ATP-dependent DNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHY8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.950e-36
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   22 GIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPERLGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKKTFPDVPVIALTATA 342
            GIPAA ++S T + L K +++DL R      PT+KLLYVTPERL  SDS++  +  LH +GMLARFV+DEAHCVSSWGHDFRPDY KLG +K  FP VP++ALTATA
Sbjct:   93 GIPAAFLSSQTLAALKKAVWRDLHRPI----PTLKLLYVTPERLAASDSLIQVLESLHQRGMLARFVVDEAHCVSSWGHDFRPDYHKLGNLKDLFPSVPLMALTATA 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82208.15879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU42_ECTSI3.820e-6183.48ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxI... [more]
A0A835YHS9_9STRA4.910e-4466.37DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A5D6YCC8_9STRA4.570e-3762.16ATP-dependent DNA helicase n=1 Tax=Pythium brassic... [more]
A0A2D4CBX1_PYTIN6.410e-3759.32ATP-dependent DNA helicase n=1 Tax=Pythium insidio... [more]
A0A8K1CM96_PYTOL8.690e-3760.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CC22_PYTIN1.550e-3659.32DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A4D9D6U8_9STRA2.050e-3659.09ATP-dependent DNA helicase n=2 Tax=Monodopsidaceae... [more]
A0A6G0XAI7_9STRA3.450e-3662.62ATP-dependent DNA helicase n=1 Tax=Aphanomyces eut... [more]
K3WD55_GLOUD5.580e-3657.63ATP-dependent DNA helicase n=1 Tax=Globisporangium... [more]
A0A1V9ZHY8_9STRA5.950e-3662.62ATP-dependent DNA helicase n=1 Tax=Achlya hypogyna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82208contigH-elongata_contig82208:1054..2191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue8.3e-52
Seed eggNOG ortholog2880.D8LU42
KEGG koko:K10900,ko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
GOsGO:0000724,GO:0000725,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009266,GO:0009378,GO:0009409,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010035,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042221,GO:0042623,GO:0042631,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0070417,GO:0070887,GO:0071103,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1901700,GO:1901701
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-16_000130.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.0979266-CDS-H-elongata_contig82208:1053..12061622931229.0979266-CDS-H-elongata_contig82208:1053..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82208 1054..1206 -
1691679750.9140944-CDS-H-elongata_contig82208:1053..12061691679750.9140944-CDS-H-elongata_contig82208:1053..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82208 1054..1206 -
1622931229.115707-CDS-H-elongata_contig82208:1990..21911622931229.115707-CDS-H-elongata_contig82208:1990..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82208 1991..2191 -
1691679750.9307005-CDS-H-elongata_contig82208:1990..21911691679750.9307005-CDS-H-elongata_contig82208:1990..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82208 1991..2191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82208.15879.1prot_H-elongata_contig82208.15879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82208 1054..2191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82208.15879.1

>prot_H-elongata_contig82208.15879.1 ID=prot_H-elongata_contig82208.15879.1|Name=mRNA_H-elongata_contig82208.15879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
VFKAPCGGIPAAHITSATPSVLVKQIYKDLARADKGREPTIKLLYVTPER
LGNSDSMLDFMRRLHDQGMLARFVIDEAHCVSSWGHDFRPDYSKLGLIKK
TFPDVPVIALTATATPEV
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mRNA from alignment at H-elongata_contig82208:1054..2191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82208.15879.1 ID=mRNA_H-elongata_contig82208.15879.1|Name=mRNA_H-elongata_contig82208.15879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-elongata_contig82208:1054..2191- (Himanthalia elongata Himel1 dioecious)
GTTTTCAAGGCACCCTGCGGTGGCATACCGGCAGCGCACATAACGAGCGC CACCCCGAGCGTCCTCGTGAAGCAGATCTACAAGGACCTTGCGAGGGCCG ACAAAGGGCGGGAGCCGACGATCAAGCTCCTCTACGTGACGCCAGAGAGG CTAGGGAACTCGGACTCGATGCTGGACTTCATGCGCCGCCTTCACGATCA GGTGGAAGACAGAGAGGGAGAGAGAAGACCGCCCCCTTCCCCCCGCCAGA AAAAAAGAAACGTAAAAAATCTGATGCGGGGATTAAAAAGTTCTATTCCC CCGTCTCTTCGCCAGTTCTTGGCGACATCATTTCAGTACGACATTAGTTG ATTTTTGAGTTAAACTCTGTGATGGAAGAGAAACATTGTGCGAGGAAGGG GGGGGGGGTTCCACCCGATGCATTTTTTTCGTTCGCTAGTTTCCGTCGTG GGGCCCACGCAGTTTTCCCCCGCCCCCCGCATTTTTTGTCTGTCCGTGAG GAATCATCCAACGAATGCTTGGGGGCGGAGGGTTACAAATATGTTACAGA GTTGAGGGCAGAGGCATCAAAACGGCCCCTCCCGGAGATAAGATCCATCC CCTTTACCGGATATCAAGAGCACTTGCACCCTGAACACACCCAGTTCCAT CACACCAGGGGATTTTTAAAGTATATCCCCGGGAGGGATTGTTTTGATAT CGTACCCCTGAAAACTTGGGGGTAAATTTCTAGCATTCCCCCCTCCTTTG ATTGAACGGCTTGTAAAGTTGTTTCATATGTCGCTTGCGTTGTGTGTGTG TGTATTTATTAAATTTTATATAACCGCGCAATCCGGCCCCCCTGTTATGT TAGCTCTTCTAGGCTATTCTCGCATCGATCCTCCCAATGGGGGATTCAGT GTGTGTGTGTGTGTGTGTGTCTATGCGGCGCCGGTTGACTATATCTCCCC CCGATATCCCCCCTCTTTTTTTGTGACTTCTGCAGGGAATGCTTGCCCGG TTCGTGATCGACGAGGCGCACTGCGTGTCCTCTTGGGGTCACGACTTTCG GCCGGACTATTCCAAGCTCGGTCTCATCAAAAAAACATTTCCAGACGTCC CCGTCATCGCCCTCACAGCCACTGCGACGCCGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig82208:1054..2191-

>mRNA_H-elongata_contig82208.15879.1 ID=mRNA_H-elongata_contig82208.15879.1|Name=mRNA_H-elongata_contig82208.15879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig82208:1054..2191- (Himanthalia elongata Himel1 dioecious)
GTTTTCAAGGCACCCTGCGGTGGCATACCGGCAGCGCACATAACGAGCGC
CACCCCGAGCGTCCTCGTGAAGCAGATCTACAAGGACCTTGCGAGGGCCG
ACAAAGGGCGGGAGCCGACGATCAAGCTCCTCTACGTGACGCCAGAGAGG
CTAGGGAACTCGGACTCGATGCTGGACTTCATGCGCCGCCTTCACGATCA
GGTTTTCAAGGCACCCTGCGGTGGCATACCGGCAGCGCACATAACGAGCG
CCACCCCGAGCGTCCTCGTGAAGCAGATCTACAAGGACCTTGCGAGGGCC
GACAAAGGGCGGGAGCCGACGATCAAGCTCCTCTACGTGACGCCAGAGAG
GCTAGGGAACTCGGACTCGATGCTGGACTTCATGCGCCGCCTTCACGATC
AGGGAATGCTTGCCCGGTTCGTGATCGACGAGGCGCACTGCGTGTCCTCT
TGGGGTCACGACTTTCGGCCGGACTATTCCAAGCTCGGTCTCATCAAAAA
AACATTTCCAGACGTCCCCGTCATCGCCCTCACAGCCACTGCGACGCCGG
AGGTGGGAATGCTTGCCCGGTTCGTGATCGACGAGGCGCACTGCGTGTCC
TCTTGGGGTCACGACTTTCGGCCGGACTATTCCAAGCTCGGTCTCATCAA
AAAAACATTTCCAGACGTCCCCGTCATCGCCCTCACAGCCACTGCGACGC
CGGAGGTG
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