mRNA_H-elongata_contig82136.15876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82136.15876.1
Unique NamemRNA_H-elongata_contig82136.15876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: D7FM70_ECTSI (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM70_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 5.350e-66
Identity = 147/168 (87.50%), Postives = 154/168 (91.67%), Query Frame = 1 
Query:   13 GHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSPRPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            GH DEVNAIKWDP G  LASCSDDYTAKIW+MGQ SCVH+LEEHDKEIYTIKWSPRPEKKLL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG      DYLVSGSFAGHLYIWSVKDG+L++SYQGEGDIFEVAWNFREDRIAACFSTS V V+D+RM
Sbjct:  453 GHCDEVNAIKWDPSGTFLASCSDDYTAKIWKMGQTSCVHNLEEHDKEIYTIKWSPRPEKKLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG------DYLVSGSFAGHLYIWSVKDGTLVKSYQGEGDIFEVAWNFREDRIAACFSTSTVCVMDWRM 614
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A7S2FEW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEW2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.550e-47
Identity = 87/177 (49.15%), Postives = 99/177 (55.93%), Query Frame = 1 
Query:   13 GHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTS---LVAVIDFRM 516
            GH DEVNAIKWDP GN+LASCSDD TAK+W +GQ  C+H L EH KEIYTI+WSP       P KKL+                                      SG      DY+ SGS  G LY+WSVKDGS++RSY+G  DIFEVAWN   +RIAAC   S    V VIDFRM
Sbjct:   96 GHKDEVNAIKWDPSGNILASCSDDTTAKLWALGQPKCLHDLREHGKEIYTIRWSPTGTGSPNPNKKLVLASASFDSMVKLWDVETGACTHSLNRHDKKVYTVAFSPSG------DYIASGSLGGQLYVWSVKDGSIVRSYRGGSDIFEVAWNASGNRIAACGGASEGHAVTVIDFRM 266
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A7S4D807_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D807_HETAK)

HSP 1 Score: 157 bits (396), Expect = 3.160e-44
Identity = 83/168 (49.40%), Postives = 97/168 (57.74%), Query Frame = 1 
Query:   13 GHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSPRPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            GH DEVNAIKWD  G LLASCSDD TAKIW   + S V +L EH KEIYTI+WSP                                             S      G+YL SGS AGHL IWSVKDG+LI++YQG GDIFEVAWN  E++IAAC+ST++V ++DFRM
Sbjct:  131 GHTDEVNAIKWDAMGTLLASCSDDGTAKIWNPDKDSFVQNLCEHTKEIYTIQWSPTGPGTDNPNKPVHLASASFDATVKLWDVEYGKSIYTLSRNDESVYSVAFSPSGEYLASGSLAGHLCIWSVKDGALIKTYQGSGDIFEVAWNHSENKIAACYSTNVVTILDFRM 298
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A7S2CU47_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CU47_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.240e-41
Identity = 81/179 (45.25%), Postives = 101/179 (56.42%), Query Frame = 1 
Query:   13 GHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACF-----STSLVAVIDFRM 516
            GH DEVNAIKWDP GN+LASCSDD +AK+W +G+ + +H L EH KEIYTI+WSP       P KKL+                                       G      DY+ SGS  G LY+WS++DGS++RS++G  DIFEVAWN R DRIAAC      S++ V +IDFRM
Sbjct:  381 GHKDEVNAIKWDPSGNILASCSDDTSAKLWTLGEPNHLHDLREHSKEIYTIRWSPTGLGSQNPNKKLVLASASFDSMVKLWDVERGCCTHSLNRHDKKVYTVAFSPCG------DYIASGSLGGQLYVWSIRDGSIVRSFRGGSDIFEVAWNSRGDRIAACGGYESGSSNAVTIIDFRM 553
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A445G7Q1_GLYSO (WD40 repeat-containing protein HOS15 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445G7Q1_GLYSO)

HSP 1 Score: 146 bits (368), Expect = 3.920e-40
Identity = 76/175 (43.43%), Postives = 95/175 (54.29%), Query Frame = 1 
Query:   10 AGHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            AGH  EVN +KWDP G+LLASCSDD TAKIW M Q + +H L EH KEIYTI+WSP       P  KL+                                      +G      DYLVSGS    ++IWS++DG ++++Y G G IFEV WN   D+IAACF+ + V V+DFRM
Sbjct:  121 AGHQGEVNCVKWDPSGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLMYSLDGHRHPVYSVAFSPNG------DYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 289
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: L8HHW9_ACACA (Transducin (Beta) family 1X-linked, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHW9_ACACA)

HSP 1 Score: 149 bits (377), Expect = 6.110e-40
Identity = 80/171 (46.78%), Postives = 93/171 (54.39%), Query Frame = 1 
Query:   22 DEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            DEVNAIKWDP G LLASCSDD+TAKIW + Q  CVH  EEH KEIYTIKWSP       P + L+                                       G     G+YL SG     L+IWSV+DGSL+R+Y+G G IFEV WN   D++AACFS + V VID RM
Sbjct:  311 DEVNAIKWDPSGTLLASCSDDFTAKIWSLKQERCVHDFEEHQKEIYTIKWSPTGVGSPNPNRALVLASASFDAMIKLWDADR----------------------GVCFPSGEYLASGXXXRCLHIWSVRDGSLVRTYRGNGGIFEVCWNKDGDKVAACFSNNTVCVIDVRM 459
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: I1K293_SOYBN (LisH domain-containing protein n=20 Tax=Phaseoleae TaxID=163735 RepID=I1K293_SOYBN)

HSP 1 Score: 144 bits (364), Expect = 3.080e-37
Identity = 75/174 (43.10%), Postives = 94/174 (54.02%), Query Frame = 1 
Query:   13 GHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            GH  EVN +KWDP G+LLASCSDD TAKIW M Q + +H L EH KEIYTI+WSP       P  KL+                                      +G      DYLVSGS    ++IWS++DG ++++Y G G IFEV WN   D+IAACF+ + V V+DFRM
Sbjct:  457 GHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLIYSLDGHRHPVYSVAFSPNG------DYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 624
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A7S4K590_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4K590_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 3.860e-37
Identity = 70/161 (43.48%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:   34 AIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSPRPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            AIK DP G LLASCSDDYTAK+W M   + +H L +H KEIYTIKWSP  +                                          S      G YL SGSF   L+IWSVKDGSL+++Y+G G IFEV WN    ++AACFS + V V+D RM
Sbjct:    1 AIKRDPSGQLLASCSDDYTAKLWSMSSTNALHDLRQHTKEIYTIKWSPTGQGSANPAANLVLASASFDSTVRIWDPVTGQCRHVLSKHSDPVYSVAFSSNGQYLASGSFDRCLHIWSVKDGSLVKTYRGHGGIFEVCWNAEGTKVAACFSNNTVTVMDVRM 161
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A6A5CAK7_NAEFO (Guanine nucleotide-binding protein subunit beta-like protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5CAK7_NAEFO)

HSP 1 Score: 142 bits (359), Expect = 1.630e-36
Identity = 80/179 (44.69%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:   10 AGHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQAS-----CVHSLEEHDKEIYTIKWSPRPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSL-----VAVIDFRM 516
            AGH DEVNAI+W P G+LLASCSDD+TAKIW  G +S     CV  L+EH KEIYTIKWSP                                             S     +G YL SGSF   L+IWSV DG L+++Y+G G IFEV WN   D++AACFS SL     V V+DF M
Sbjct:  454 AGHEDEVNAIRWSPNGSLLASCSDDFTAKIWSFGSSSSSSQKCVFDLKEHTKEIYTIKWSPTGPGTDYPNRNMVLASASFDATIKLWDPTVGKCLHSLTKHTDPVYSVAFSPDGKYLASGSFDRFLHIWSVHDGKLVKTYRGTGSIFEVCWNSTGDKVAACFSNSLTEEFNVCVLDFHM 632
[Close]
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Match: A0A7J0E419_9ERIC (WD-40 repeat family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0E419_9ERIC)

HSP 1 Score: 137 bits (345), Expect = 4.370e-36
Identity = 74/175 (42.29%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:   10 AGHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDKEIYTIKWSP------RPEKKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWNFREDRIAACFSTSLVAVIDFRM 516
            +GH  EVN +KWDP G+LLASCSDD TAKIW M Q   VH L EH KEIYTI+WSP       P K+LL                                      +G      +YLVSGS    ++IWS+KD  ++++Y G G IFEV WN   ++IAA F+ + V V+DFRM
Sbjct:  185 SGHKGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVHDLREHAKEIYTIRWSPTGPGTNNPNKQLLLVSASFDATVKLWDVEQGRLTCSLNGHRDPVYSVAFSPNG------EYLVSGSLDKSMHIWSLKDRKIVKTYTGSGGIFEVCWNKEGNKIAASFADNTVCVLDFRM 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82136.15876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM70_ECTSI5.350e-6687.50LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2FEW2_9STRA7.550e-4749.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4D807_HETAK3.160e-4449.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CU47_9STRA2.240e-4145.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A445G7Q1_GLYSO3.920e-4043.43WD40 repeat-containing protein HOS15 n=1 Tax=Glyci... [more]
L8HHW9_ACACA6.110e-4046.78Transducin (Beta) family 1X-linked, putative n=1 T... [more]
I1K293_SOYBN3.080e-3743.10LisH domain-containing protein n=20 Tax=Phaseoleae... [more]
A0A7S4K590_9EUKA3.860e-3743.48Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6A5CAK7_NAEFO1.630e-3644.69Guanine nucleotide-binding protein subunit beta-li... [more]
A0A7J0E419_9ERIC4.370e-3642.29WD-40 repeat family protein n=1 Tax=Actinidia rufa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82136contigH-elongata_contig82136:504..2538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue5.3e-55
Seed eggNOG ortholog2880.D7FM70
Preferred nameTBL1XR1
KEGG koko:K04508
KEGG Pathwayko04013,ko04310,map04013,map04310
GOsGO:0000118,GO:0000122,GO:0000151,GO:0001067,GO:0001654,GO:0001745,GO:0001932,GO:0001933,GO:0002009,GO:0002021,GO:0002165,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006629,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007219,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007600,GO:0007605,GO:0008013,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008587,GO:0008593,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0014070,GO:0015630,GO:0016042,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0017053,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019904,GO:0019941,GO:0022008,GO:0022416,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030177,GO:0030182,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035264,GO:0035295,GO:0035601,GO:0036211,GO:0038127,GO:0040007,GO:0040008,GO:0042058,GO:0042221,GO:0042325,GO:0042326,GO:0042393,GO:0042461,GO:0042592,GO:0042675,GO:0042676,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0043523,GO:0043524,GO:0043627,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045165,GO:0045444,GO:0045570,GO:0045572,GO:0045747,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046530,GO:0046620,GO:0046622,GO:0047485,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050872,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051603,GO:0051716,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0060612,GO:0060613,GO:0060828,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0070302,GO:0070303,GO:0070491,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090207,GO:0090263,GO:0090311,GO:0090312,GO:0090596,GO:0097159,GO:0098732,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0104004,GO:0140110,GO:1901184,GO:1901214,GO:1901215,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001252
EggNOG free text desc.transcription corepressor activity
EggNOG OGsCOG2319@1,KOG0273@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size519
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82136.15876.1prot_H-elongata_contig82136.15876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82136 504..2538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.8046227-CDS-H-elongata_contig82136:503..6051622931228.8046227-CDS-H-elongata_contig82136:503..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 504..605 -
1691679750.786109-CDS-H-elongata_contig82136:503..6051691679750.786109-CDS-H-elongata_contig82136:503..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 504..605 -
1622931228.8193321-CDS-H-elongata_contig82136:1233..13161622931228.8193321-CDS-H-elongata_contig82136:1233..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 1234..1316 -
1691679750.802588-CDS-H-elongata_contig82136:1233..13161691679750.802588-CDS-H-elongata_contig82136:1233..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 1234..1316 -
1622931228.836135-CDS-H-elongata_contig82136:1640..17681622931228.836135-CDS-H-elongata_contig82136:1640..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 1641..1768 -
1691679750.812546-CDS-H-elongata_contig82136:1640..17681691679750.812546-CDS-H-elongata_contig82136:1640..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 1641..1768 -
1622931228.8550797-CDS-H-elongata_contig82136:2074..21841622931228.8550797-CDS-H-elongata_contig82136:2074..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 2075..2184 -
1691679750.821704-CDS-H-elongata_contig82136:2074..21841691679750.821704-CDS-H-elongata_contig82136:2074..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 2075..2184 -
1622931228.8727267-CDS-H-elongata_contig82136:2442..25381622931228.8727267-CDS-H-elongata_contig82136:2442..2538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 2443..2538 -
1691679750.831166-CDS-H-elongata_contig82136:2442..25381691679750.831166-CDS-H-elongata_contig82136:2442..2538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82136 2443..2538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82136.15876.1

>prot_H-elongata_contig82136.15876.1 ID=prot_H-elongata_contig82136.15876.1|Name=mRNA_H-elongata_contig82136.15876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MIRAGHLDEVNAIKWDPCGNLLASCSDDYTAKIWRMGQASCVHSLEEHDK
EIYTIKWSPRPEKKLLLASASFDATVKLWDVQAGKVVSTLQRHEDPVYSV
AFSPSXXXXGEGDYLVSGSFAGHLYIWSVKDGSLIRSYQGEGDIFEVAWN
FREDRIAACFSTSLVAVIDFRM*
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mRNA from alignment at H-elongata_contig82136:504..2538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82136.15876.1 ID=mRNA_H-elongata_contig82136.15876.1|Name=mRNA_H-elongata_contig82136.15876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2035bp|location=Sequence derived from alignment at H-elongata_contig82136:504..2538- (Himanthalia elongata Himel1 dioecious)
ATGATTCGCGCAGGACACTTAGATGAGGTGAACGCCATCAAGTGGGATCC
GTGCGGCAACTTGCTAGCCAGCTGTTCCGACGACTACACCGCCAAGGTTG
GTACTACATCGTCGACCGTTATCGTTATCGTTATCGCCATCGTCATCGTT
ATCTACAAGTAGGATATTAAAATAAGTCAAATAATAATGAAACGGTGGCG
AATTTGGCTGATTACAGGAGTTAGGTCGGTTCGGTACAGCGCTGCGACCA
GAGATCAGAGACGTGATACTGCCGTAGCAATCGAAGTGATTCCCGTGTGT
TGTCCACCCACCTCTGGCTTAACTGATATCGGGCATCGACATGGACACAA
ACAGATCTGGAGGATGGGTCAGGCGTCGTGTGTGCACAGTCTGGAGGAGC
ATGACAAGGAAATTTACACGATAAAGTGGAGCCCCAGGCCTGAAAAAAAA
CTCTTGCTCGCCAGGTACTCCACTATACAGCAGTCTCTAGTCTGTTGCCC
TGGCCCTGATATTTTCGTTCAAGTATGACCCTAAACCTAACACCTTATTT
AGTACTGTATGCAGTACTCAAATTTAGTACTGTACTGTACTGTACCGCTA
TCTCTAAATCTTTGTATCTTCACTGAGAACAGATATATGTGTTGTAGTAT
ATCGGTATGGTATCGGTATGACGTTATGATATCACCGTGGGTCCCCAAGT
AGAGCTATAATGCTATGACGTTATTTTGCTGTTGCCTTTGGCGTATATTG
GTTTCGTTGTCATTGCACAGTGCGTCGTTCGACGCAACGGTAAAGCTTTG
GGATGTCCAAGCGGGGAAGGTGGTTTCGACCCTCCAGAGACACGAGGACC
CCGTCTACAGCGTGGCTTTCAGTCCGTCAGGNNNNNNNNNNGGGGAGGGT
GTTTGGGCCCCTCGAGAAACAGGGGCCCCCCTTCAACGGGGGGGTTTTGG
GCCGGTGGGGGGGGAGAAGGGGGGGGAGGGGGTGGGAAAGGGGACGGTAG
CCGACGGTAGCCAAACAGTCCTCGAAATAACAAATATAATCTGTCCTAAT
TGTTACTGTTATGGTTGCTTCCTCGTGGACAAATCCGCGGCGAGTCACCG
TGTGCGTCAAGTAGTATGATGCGTGCTGTTATTAGTGACATTGATATTGT
TTTGTTTTGTTGAGGTGTTGTGTTGTGTTGTGTTGCACGATCCTCTGTGA
CGTCTCTTATATCATCAAAAAGGCGATTACTTAGTGAGCGGATCTTTCGC
TGGGCATCTCTACATCTGGAGCGTGAAGGACGGCTCTCTCATCAGGAGCT
ACCAGGTGAGGGTGTCAGACTGTCGGGTCAATCATTGTCCTAACCCTAAC
CCTTGTACCATTGAAGCCCGCGGTTTCGCTGCTGTTAATTTCCAATCCAC
GGTGAACAGTATTGTATTCCTCAGTAATGAAGTCTTGATGTCGAAAAATA
GACGTGCTGGCGGGGACGTTTCCGCCATCCCCATGCTTAAAAATGATGAG
TCCACCCCTTCTGGTCTGGTCCGCAGCGTTCGCTTTTGTGTTACCCTTTC
CGATGGCGATCACCCTTCACTCTCTTTGCTGGCACTATCTTGTAGCTTGT
ACCGTTTCTACGTTATCATGTACGGTATAACTTAAGAGGATTTGATTGTT
TGATCATTTCATTATCTTATTGTTTGATATTAAGGGTTAGGGTTAGGGTT
AGGGTTAGGGTAGAAAGAAAGCAAACTTCAGCTCCGGTGAACATCCATCC
TTACTCCCTAGTCTTGATCTCTCTGTGCATCTCCAATGCCGCCTAATACT
TATTCTAATACTAATAACGAATCAATAATGAACAATAAGCAACCCTACTA
ACCCTTGACACTAATGCTATTGCTAATGCTATTGCTAATGCTATTGCTAA
TGTTATTGCTAATGCTAATGGCTGTATGAACAGGGAGAGGGCGATATCTT
CGAAGTGGCTTGGAACTTCAGAGAGGACCGCATCGCTGCTTGTTTTTCTA
CGAGTCTTGTGGCCGTTATTGACTTCCGAATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig82136:504..2538-

>mRNA_H-elongata_contig82136.15876.1 ID=mRNA_H-elongata_contig82136.15876.1|Name=mRNA_H-elongata_contig82136.15876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig82136:504..2538- (Himanthalia elongata Himel1 dioecious)
ATGATTCGCGCAGGACACTTAGATGAGGTGAACGCCATCAAGTGGGATCC
GTGCGGCAACTTGCTAGCCAGCTGTTCCGACGACTACACCGCCAAGATGA
TTCGCGCAGGACACTTAGATGAGGTGAACGCCATCAAGTGGGATCCGTGC
GGCAACTTGCTAGCCAGCTGTTCCGACGACTACACCGCCAAGATCTGGAG
GATGGGTCAGGCGTCGTGTGTGCACAGTCTGGAGGAGCATGACAAGGAAA
TTTACACGATAAAGTGGAGCCCCAGGCCTGAAAAAAAACTCTTGCTCGCC
AGATCTGGAGGATGGGTCAGGCGTCGTGTGTGCACAGTCTGGAGGAGCAT
GACAAGGAAATTTACACGATAAAGTGGAGCCCCAGGCCTGAAAAAAAACT
CTTGCTCGCCAGTGCGTCGTTCGACGCAACGGTAAAGCTTTGGGATGTCC
AAGCGGGGAAGGTGGTTTCGACCCTCCAGAGACACGAGGACCCCGTCTAC
AGCGTGGCTTTCAGTCCGTCAGGNNNNNNNNNNGGGGAGGTGCGTCGTTC
GACGCAACGGTAAAGCTTTGGGATGTCCAAGCGGGGAAGGTGGTTTCGAC
CCTCCAGAGACACGAGGACCCCGTCTACAGCGTGGCTTTCAGTCCGTCAG
GNNNNNNNNNNGGGGAGGGCGATTACTTAGTGAGCGGATCTTTCGCTGGG
CATCTCTACATCTGGAGCGTGAAGGACGGCTCTCTCATCAGGAGCTACCA
GGCGATTACTTAGTGAGCGGATCTTTCGCTGGGCATCTCTACATCTGGAG
CGTGAAGGACGGCTCTCTCATCAGGAGCTACCAGGGAGAGGGCGATATCT
TCGAAGTGGCTTGGAACTTCAGAGAGGACCGCATCGCTGCTTGTTTTTCT
ACGAGTCTTGTGGCCGTTATTGACTTCCGAATGTAGGGAGAGGGCGATAT
CTTCGAAGTGGCTTGGAACTTCAGAGAGGACCGCATCGCTGCTTGTTTTT
CTACGAGTCTTGTGGCCGTTATTGACTTCCGAATGTAG
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