mRNA_H-elongata_contig82068.15871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig82068.15871.1
Unique Name	mRNA_H-elongata_contig82068.15871.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 9.850e-29
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2

Query:   98 GWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:    5 GWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 68

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.710e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  181 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 253

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.940e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  198 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 270

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.260e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  223 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 295

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.580e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  394 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 466

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.680e-26
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IR+GWYGD EWSGQ+G W+A
Sbjct:  529 RVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKA 601

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.830e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  495 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 567

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.900e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  505 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 577

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.610e-26
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV + + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWY D  W GQ+G W+A
Sbjct:  109 RVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDEAWPGQEGGWKA 181

[Close]

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.330e-25
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2

Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL F+LKRK++EVW +IRKGWYGD  W GQ+G W+A
Sbjct:  378 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKA 450

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot

BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JH53_9PHAE	9.850e-29	71.88	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZ92_9PHAE	3.710e-27	65.75	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KF39_9PHAE	4.940e-27	65.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHE7_9PHAE	7.260e-27	65.75	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A6H5K024_9PHAE	3.580e-26	65.75	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
D8LNM6_ECTSI	3.680e-26	65.75	DDE_3 domain-containing protein n=3 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	4.830e-26	65.75	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5JR41_9PHAE	4.900e-26	65.75	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]
A0A6H5JS64_9PHAE	7.610e-26	63.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDX7_9PHAE	3.330e-25	64.38	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig82068	contig	H-elongata_contig82068:1982..2422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	441
Cds size	183
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931228.33468-UTR-H-elongata_contig82068:1981..2239	1622931228.33468-UTR-H-elongata_contig82068:1981..2239	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig82068 1982..2239 +
1691679750.59741-UTR-H-elongata_contig82068:1981..2239	1691679750.59741-UTR-H-elongata_contig82068:1981..2239	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig82068 1982..2239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931228.3524296-CDS-H-elongata_contig82068:2239..2422	1622931228.3524296-CDS-H-elongata_contig82068:2239..2422	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig82068 2240..2422 +
1691679750.6100836-CDS-H-elongata_contig82068:2239..2422	1691679750.6100836-CDS-H-elongata_contig82068:2239..2422	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig82068 2240..2422 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig82068.15871.1	prot_H-elongata_contig82068.15871.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig82068 2240..2422 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig82068:1982..2422+
coding sequence from alignment at H-elongata_contig82068:1982..2422+

protein sequence of mRNA_H-elongata_contig82068.15871.1

>prot_H-elongata_contig82068.15871.1 ID=prot_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MVRSKGELAGNCCSKLVTHAIGEMNMWIKNRDGVLSGAIGALEIPEGYDK
DDISPVGDIEG

mRNA from alignment at H-elongata_contig82068:1982..2422+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig82068.15871.1 ID=mRNA_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig82068:1982..2422+ (Himanthalia elongata Himel1 dioecious)
CCGCCCACGGAGCGAGATCAAGAAGATCAAAACTGAAAGGGCGAGAGATG
CTGTAGCTCTTGATTGACTAAGGGTTCAGGTGAACGTCTAGGAGACGGGA
TGGGAGTTGATTTGGACGCCTCCTTACATACCCTCTTCCCAACCGGTCGA
GCTTTTTGGGCAGCATAGGAAGCAGTACGCAAGTCTCCACTTTAAGTTGA
AACGAAAGTTGCAGGAGGTATGGGAGAAAATTCGTAAAGGGTGGTACGGA
GATCCGGAATGGTCAGGTCAAAAGGGGAGCTGGCAGGCAACTGTTGTTCA
AAATTGGTTACCCATGCCATTGGAGAGATGAACATGTGGATTAAAAATCG
TGATGGAGTCCTAAGTGGTGCGATAGGCGCGCTTGAAATTCCAGAAGGAT
ATGACAAGGACGACATATCGCCCGTGGGTGACATCGAGGGC

Coding sequence (CDS) from alignment at H-elongata_contig82068:1982..2422+

>mRNA_H-elongata_contig82068.15871.1 ID=mRNA_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig82068:1982..2422+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAGGTCAAAAGGGGAGCTGGCAGGCAACTGTTGTTCAAAATTGGT
TACCCATGCCATTGGAGAGATGAACATGTGGATTAAAAATCGTGATGGAG
TCCTAAGTGGTGCGATAGGCGCGCTTGAAATTCCAGAAGGATATGACAAG
GACGACATATCGCCCGTGGGTGACATCGAGGGCATGGTCAGGTCAAAAGG
GGAGCTGGCAGGCAACTGTTGTTCAAAATTGGTTACCCATGCCATTGGAG
AGATGAACATGTGGATTAAAAATCGTGATGGAGTCCTAAGTGGTGCGATA
GGCGCGCTTGAAATTCCAGAAGGATATGACAAGGACGACATATCGCCCGT
GGGTGACATCGAGGGC