mRNA_H-elongata_contig82068.15871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82068.15871.1
Unique NamemRNA_H-elongata_contig82068.15871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 9.850e-29
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2 
Query:   98 GWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:    5 GWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 68
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.710e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  181 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 253
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.940e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  198 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 270
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.260e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  223 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 295
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.580e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  394 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 466
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.680e-26
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IR+GWYGD EWSGQ+G W+A
Sbjct:  529 RVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKA 601
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.830e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  495 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 567
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.900e-26
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWYGD EW GQ+G W+A
Sbjct:  505 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA 577
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.610e-26
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV + + + GW LIWTPPY+PS QP+ELF QH KQY SL+F+LKRK++EVW +IRKGWY D  W GQ+G W+A
Sbjct:  109 RVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDEAWPGQEGGWKA 181
[Close]
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.330e-25
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2 
Query:   71 RVQVNV*ETGWELIWTPPYIPSSQPVELFGQHRKQYASLHFKLKRKLQEVWEKIRKGWYGDPEWSGQKGSWQA 289
            RV   + + GW LIWTPPY+PS QP+ELF QH KQY SL F+LKRK++EVW +IRKGWYGD  W GQ+G W+A
Sbjct:  378 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKA 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82068.15871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH53_9PHAE9.850e-2971.88Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ92_9PHAE3.710e-2765.75DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF39_9PHAE4.940e-2765.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE7.260e-2765.75DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE3.580e-2665.75DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LNM6_ECTSI3.680e-2665.75DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE4.830e-2665.75DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE4.900e-2665.75DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5JS64_9PHAE7.610e-2663.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX7_9PHAE3.330e-2564.38DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82068contigH-elongata_contig82068:1982..2422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.33468-UTR-H-elongata_contig82068:1981..22391622931228.33468-UTR-H-elongata_contig82068:1981..2239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82068 1982..2239 +
1691679750.59741-UTR-H-elongata_contig82068:1981..22391691679750.59741-UTR-H-elongata_contig82068:1981..2239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82068 1982..2239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.3524296-CDS-H-elongata_contig82068:2239..24221622931228.3524296-CDS-H-elongata_contig82068:2239..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 2240..2422 +
1691679750.6100836-CDS-H-elongata_contig82068:2239..24221691679750.6100836-CDS-H-elongata_contig82068:2239..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 2240..2422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82068.15871.1prot_H-elongata_contig82068.15871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82068 2240..2422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82068.15871.1

>prot_H-elongata_contig82068.15871.1 ID=prot_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MVRSKGELAGNCCSKLVTHAIGEMNMWIKNRDGVLSGAIGALEIPEGYDK
DDISPVGDIEG
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mRNA from alignment at H-elongata_contig82068:1982..2422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82068.15871.1 ID=mRNA_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig82068:1982..2422+ (Himanthalia elongata Himel1 dioecious)
CCGCCCACGGAGCGAGATCAAGAAGATCAAAACTGAAAGGGCGAGAGATG
CTGTAGCTCTTGATTGACTAAGGGTTCAGGTGAACGTCTAGGAGACGGGA
TGGGAGTTGATTTGGACGCCTCCTTACATACCCTCTTCCCAACCGGTCGA
GCTTTTTGGGCAGCATAGGAAGCAGTACGCAAGTCTCCACTTTAAGTTGA
AACGAAAGTTGCAGGAGGTATGGGAGAAAATTCGTAAAGGGTGGTACGGA
GATCCGGAATGGTCAGGTCAAAAGGGGAGCTGGCAGGCAACTGTTGTTCA
AAATTGGTTACCCATGCCATTGGAGAGATGAACATGTGGATTAAAAATCG
TGATGGAGTCCTAAGTGGTGCGATAGGCGCGCTTGAAATTCCAGAAGGAT
ATGACAAGGACGACATATCGCCCGTGGGTGACATCGAGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig82068:1982..2422+

>mRNA_H-elongata_contig82068.15871.1 ID=mRNA_H-elongata_contig82068.15871.1|Name=mRNA_H-elongata_contig82068.15871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig82068:1982..2422+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAGGTCAAAAGGGGAGCTGGCAGGCAACTGTTGTTCAAAATTGGT
TACCCATGCCATTGGAGAGATGAACATGTGGATTAAAAATCGTGATGGAG
TCCTAAGTGGTGCGATAGGCGCGCTTGAAATTCCAGAAGGATATGACAAG
GACGACATATCGCCCGTGGGTGACATCGAGGGCATGGTCAGGTCAAAAGG
GGAGCTGGCAGGCAACTGTTGTTCAAAATTGGTTACCCATGCCATTGGAG
AGATGAACATGTGGATTAAAAATCGTGATGGAGTCCTAAGTGGTGCGATA
GGCGCGCTTGAAATTCCAGAAGGATATGACAAGGACGACATATCGCCCGT
GGGTGACATCGAGGGC
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