mRNA_H-elongata_contig82063.15869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82063.15869.1
Unique NamemRNA_H-elongata_contig82063.15869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: D7FUY1_ECTSI (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 5.650e-60
Identity = 88/116 (75.86%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 VTGGVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACR--YEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            +TGG VPY+ AWL QQR+L+ERM WQRE+  S  S+DVLL+LEHP VYTLGRGS+LD+LRFDP+DP+     E+RRTERGGEVTWHGPGQ+VGYPVLDLN+HKKDLHWYLRQLEEV
Sbjct:   80 ITGGSVPYDRAWLWQQRLLHERMAWQREEYPSQDSYDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEV 195          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A835YUM8_9STRA (Lipoyl(octanoyl) transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM8_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.450e-51
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 1
Query:   16 VPYEEAWLCQQRILYERMTWQREKKKSSASH--DVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            VPY EAW  QQ +L +RM WQR++   S  +  D L+LLEHPSVYTLGRGST +NL+FDP+ P C +E+ R ERGGEVTWHGPGQIVGYP+LDLN+H KDLHWYLR LEE+
Sbjct:   22 VPYAEAWAWQQSLLRQRMAWQRQRGGDSPHYGCDALILLEHPSVYTLGRGSTTENLKFDPAAPGCPHELYRIERGGEVTWHGPGQIVGYPILDLNFHTKDLHWYLRSLEEM 132          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A6H5JUQ5_9PHAE (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.810e-48
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1
Query:   67 MTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACR--YEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            M WQRE+  S  SHDVLL+LEHP VYTLGRGS+LD+LRFDP+DP+     E+RRTERGGEVTWHGPGQ+VGYPVLDLN+H KDLHWY+RQLEEV
Sbjct:    1 MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLDGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHNKDLHWYMRQLEEV 94          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A8K1FD10_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD10_PYTOL)

HSP 1 Score: 148 bits (373), Expect = 2.120e-42
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   10 GVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            G V YE AW  Q+ ++ +R+T  RE    +  HDV+LLLEHP+VYTLGRG+TLDN++FDP   + +  + R +RGGEVT+HGPGQ+V YP+LDLNYHKKDLHWYLRQ+EEV
Sbjct:   18 GTVEYETAWNWQKELIQQRITASREG--CAIDHDVVLLLEHPTVYTLGRGATLDNVKFDPERESLK--LIRVDRGGEVTYHGPGQLVVYPILDLNYHKKDLHWYLRQVEEV 124          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A2D4BMI4_PYTIN (Lipoyl(octanoyl) transferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMI4_PYTIN)

HSP 1 Score: 144 bits (362), Expect = 5.420e-41
Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1
Query:   22 YEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            YE AW  Q++++  R+   RE +  S  HDV+L+LEHPSVYTLGRG+T+DN++FDP+   C+  + R +RGGEVT+HGPGQ+V YP+LDLN+HK+DLHWYLRQ+EEV
Sbjct:    3 YETAWDWQKQLIQSRIVAAREGR--SIDHDVVLVLEHPSVYTLGRGATMDNVKFDPATDDCK--LIRVDRGGEVTYHGPGQVVVYPILDLNFHKRDLHWYLRQVEEV 105          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A846EB69_9CYAN (Lipoyl(octanoyl) transferase (Fragment) n=1 Tax=Desertifilum sp. SIO1I2 TaxID=2607799 RepID=A0A846EB69_9CYAN)

HSP 1 Score: 135 bits (340), Expect = 2.000e-38
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 VTGGVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDP-SDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            +  G+VPY +AW  Q++       W  E++ +    D+LLLLEHP VYTLGRG+TLD L+F+P S+P   YE+ R ERGGEVT+H PGQ+VGYP+L+L+Y+++DLHWYLRQLEE 
Sbjct:   21 INQGIVPYLQAWEWQKQ-------WVSERRDNPQLTDLLLLLEHPPVYTLGRGATLDFLKFNPTSEP---YEVHRIERGGEVTYHCPGQLVGYPILNLHYYQQDLHWYLRQLEET 125          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: K3WBB6_GLOUD (Lipoyl(octanoyl) transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBB6_GLOUD)

HSP 1 Score: 137 bits (346), Expect = 5.820e-38
Identity = 63/111 (56.76%), Postives = 89/111 (80.18%), Query Frame = 1
Query:   10 GVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            G V YE AW  Q++++ +R+   RE+K    ++DV+L+LEHPSVYTLGRG+T+ N+RFDP     ++++ R +RGGEVT+HGPGQ+V YP+LDL+++KKDLHWYLRQ+EEV
Sbjct:   40 GSVEYETAWDWQKQLIQQRIVAAREEKP--IANDVVLVLEHPSVYTLGRGATMANVRFDPQVDT-QHKLIRVDRGGEVTYHGPGQVVVYPILDLHHYKKDLHWYLRQVEEV 147          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A1L9QY15_9CYAN (Octanoyltransferase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QY15_9CYAN)

HSP 1 Score: 136 bits (342), Expect = 6.020e-38
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   10 GVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            G++PYE  W  QQ ++ ER       +++    DVL+LLEHP VYTLGRG+TLD L+FDP  P    E+ R ERGGEVT+H PGQ+VGYP+L+L Y+++DLHWYLRQLE V
Sbjct:   17 GLLPYERTWQWQQELVAER-------RENPELEDVLMLLEHPPVYTLGRGATLDFLKFDPDRPPA--ELHRVERGGEVTYHCPGQLVGYPILNLTYYQRDLHWYLRQLETV 118          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: A0A1E5QRI3_9CYAN (Octanoyltransferase n=1 Tax=Desertifilum sp. IPPAS B-1220 TaxID=1781255 RepID=A0A1E5QRI3_9CYAN)

HSP 1 Score: 136 bits (343), Expect = 7.660e-38
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 VTGGVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDP-SDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            +  G+VPY +AW  Q++       W  E++ +    D+LLLLEHP VYTLGRGSTLD L+F+P S+P   YE+ R ERGGEVT+H PGQ+VGYP+L+L+Y+++DLHWYLRQLEE 
Sbjct:   21 INQGIVPYLQAWEWQKQ-------WVSERRDNPQLTDLLLLLEHPPVYTLGRGSTLDFLKFNPTSEP---YEVHRIERGGEVTYHCPGQLVGYPILNLHYYQQDLHWYLRQLEET 125          
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Match: UPI0019B1EE97 (Lipoyl(Octanoyl) transferase LipB n=3 Tax=Cyanobacteria TaxID=1117 RepID=UPI0019B1EE97)

HSP 1 Score: 135 bits (340), Expect = 1.080e-37
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    4 TGGVVPYEEAWLCQQRILYERMTWQRE----KKKSSASHDVLLLLEHPSVYTLGRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYHKKDLHWYLRQLEEV 342
            T G++PY+ AW            WQR     +K++   +DVL+LLEHP VYTLG+GS L  LRFDP+     YE+ R ERGGEVT+H PGQ+VGYP+L+LNY++KDLHWYLRQLEEV
Sbjct:    8 TQGLMPYKLAW-----------EWQRSLADARKQNPDLNDVLILLEHPPVYTLGQGSDLGFLRFDPNQ--SEYELHRIERGGEVTYHCPGQVVGYPILNLNYYQKDLHWYLRQLEEV 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82063.15869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY1_ECTSI5.650e-6075.86Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus si... [more]
A0A835YUM8_9STRA1.450e-5167.57Lipoyl(octanoyl) transferase n=1 Tax=Tribonema min... [more]
A0A6H5JUQ5_9PHAE6.810e-4876.60Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp... [more]
A0A8K1FD10_PYTOL2.120e-4261.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BMI4_PYTIN5.420e-4159.81Lipoyl(octanoyl) transferase n=1 Tax=Pythium insid... [more]
A0A846EB69_9CYAN2.000e-3855.65Lipoyl(octanoyl) transferase (Fragment) n=1 Tax=De... [more]
K3WBB6_GLOUD5.820e-3856.76Lipoyl(octanoyl) transferase n=1 Tax=Globisporangi... [more]
A0A1L9QY15_9CYAN6.020e-3856.76Octanoyltransferase n=2 Tax=Cyanobacteria TaxID=11... [more]
A0A1E5QRI3_9CYAN7.660e-3856.52Octanoyltransferase n=1 Tax=Desertifilum sp. IPPAS... [more]
UPI0019B1EE971.080e-3756.41Lipoyl(Octanoyl) transferase LipB n=3 Tax=Cyanobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82063contigH-elongata_contig82063:2421..2765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue9.3e-48
Seed eggNOG ortholog2880.D7FUY1
KEGG rclassRC00039,RC00992,RC02867
KEGG koko:K03801
KEGG ReactionR07766,R07769
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.octanoyl transferase activity (acting on glycine-cleavage complex H protein)
EggNOG OGsCOG0321@1,KOG0325@2759
EC2.3.1.181
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.2232947-CDS-H-elongata_contig82063:2420..27651622931228.2232947-CDS-H-elongata_contig82063:2420..2765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82063 2421..2765 +
1691679750.5613844-CDS-H-elongata_contig82063:2420..27651691679750.5613844-CDS-H-elongata_contig82063:2420..2765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82063 2421..2765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82063.15869.1prot_H-elongata_contig82063.15869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82063 2421..2765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82063.15869.1

>prot_H-elongata_contig82063.15869.1 ID=prot_H-elongata_contig82063.15869.1|Name=mRNA_H-elongata_contig82063.15869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
VTGGVVPYEEAWLCQQRILYERMTWQREKKKSSASHDVLLLLEHPSVYTL
GRGSTLDNLRFDPSDPACRYEIRRTERGGEVTWHGPGQIVGYPVLDLNYH
KKDLHWYLRQLEEV*
back to top

mRNA from alignment at H-elongata_contig82063:2421..2765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82063.15869.1 ID=mRNA_H-elongata_contig82063.15869.1|Name=mRNA_H-elongata_contig82063.15869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig82063:2421..2765+ (Himanthalia elongata Himel1 dioecious)
GTCACGGGCGGGGTTGTACCCTATGAGGAGGCATGGCTCTGCCAACAACG TATACTCTACGAACGAATGACCTGGCAGCGTGAGAAAAAAAAATCTTCGG CGAGCCACGATGTGCTCCTCCTGCTGGAGCACCCTTCGGTGTATACTCTA GGAAGAGGATCGACCTTAGACAATCTTAGATTCGACCCCAGTGATCCTGC CTGTCGGTACGAGATACGGAGGACGGAGCGAGGGGGGGAGGTGACCTGGC ATGGGCCAGGACAGATCGTCGGCTACCCGGTGCTGGACTTGAACTACCAC AAGAAGGATTTGCATTGGTACCTGCGACAGCTCGAGGAGGTATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig82063:2421..2765+

>mRNA_H-elongata_contig82063.15869.1 ID=mRNA_H-elongata_contig82063.15869.1|Name=mRNA_H-elongata_contig82063.15869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig82063:2421..2765+ (Himanthalia elongata Himel1 dioecious)
GTCACGGGCGGGGTTGTACCCTATGAGGAGGCATGGCTCTGCCAACAACG
TATACTCTACGAACGAATGACCTGGCAGCGTGAGAAAAAAAAATCTTCGG
CGAGCCACGATGTGCTCCTCCTGCTGGAGCACCCTTCGGTGTATACTCTA
GGAAGAGGATCGACCTTAGACAATCTTAGATTCGACCCCAGTGATCCTGC
CTGTCGGTACGAGATACGGAGGACGGAGCGAGGGGGGGAGGTGACCTGGC
ATGGGCCAGGACAGATCGTCGGCTACCCGGTGCTGGACTTGAACTACCAC
AAGAAGGATTTGCATTGGTACCTGCGACAGCTCGAGGAGGTATGAGTCAC
GGGCGGGGTTGTACCCTATGAGGAGGCATGGCTCTGCCAACAACGTATAC
TCTACGAACGAATGACCTGGCAGCGTGAGAAAAAAAAATCTTCGGCGAGC
CACGATGTGCTCCTCCTGCTGGAGCACCCTTCGGTGTATACTCTAGGAAG
AGGATCGACCTTAGACAATCTTAGATTCGACCCCAGTGATCCTGCCTGTC
GGTACGAGATACGGAGGACGGAGCGAGGGGGGGAGGTGACCTGGCATGGG
CCAGGACAGATCGTCGGCTACCCGGTGCTGGACTTGAACTACCACAAGAA
GGATTTGCATTGGTACCTGCGACAGCTCGAGGAGGTATGA
back to top