mRNA_H-elongata_contig81961.15862.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI) HSP 1 Score: 174 bits (441), Expect = 5.300e-53 Identity = 97/118 (82.20%), Postives = 99/118 (83.90%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
VNKSME MDVERISKTMD+FEQQFEDMDVRAGYMENAM DSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGP+SNKVPAKPAA A A EDELANRLAALRK
Sbjct: 91 VNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.700e-38 Identity = 81/121 (66.94%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPA---KPAAETATATEGEDELANRLAALRK 357
+NKSMEGVVKGM +AL SMDVERIS TMD FE+QFEDMDV AGYMEN+M +TAMSTP +QVD LIQMVADE GLE+G +LDDAG + VPA +PA E D LA RLA LRK
Sbjct: 91 MNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEV-------DALAQRLADLRK 204
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.940e-37 Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVP-AKPAAETATATEGEDELANRLAALRK 357
V+KSM+GVVKGM ALK+MDVERISKTMD FE+QFEDMDV AGYMEN+M +TAMSTP +QVD LIQMVADE GLE+ QLDDAG + VP A PAA D+L+ RLA LRK
Sbjct: 91 VDKSMQGVVKGMRKALKTMDVERISKTMDQFEKQFEDMDVVAGYMENSMGATTAMSTPADQVDQLIQMVADEHGLEVASQLDDAGKVGAAVPQAGPAA--------ADDLSQRLADLRK 201
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A7S2H0C6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0C6_9STRA) HSP 1 Score: 132 bits (331), Expect = 4.020e-36 Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALR 354
++ +M GVV+GMG+ALKSMDVE+IS TM +FEQQFEDMDVRAGYME+AM+ STA +TPQE VDGLI+MVADE L LG LDDAG + N+ P A E + +G+D LA RLAALR
Sbjct: 113 ISTAMSGVVQGMGSALKSMDVEKISATMTDFEQQFEDMDVRAGYMEDAMNSSTASATPQEDVDGLIKMVADENNLALGSALDDAGAVGNEAPQAKADEKES--QGDD-LAARLAALR 226
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A7S3JWC9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWC9_9STRA) HSP 1 Score: 127 bits (320), Expect = 9.630e-35 Identity = 72/118 (61.02%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
++K+M VVKGM +ALKSMDVE+ISKTMD FE+QFEDMDVRAGYMEN+M+ STA +TP++QVD LI VADE L+L LDDAG +S KVP + +EG+++LA+RL ALR+
Sbjct: 91 MSKAMGNVVKGMSSALKSMDVEKISKTMDAFEKQFEDMDVRAGYMENSMNASTASATPEDQVDSLISEVADEHQLDLSFALDDAGAVSTKVP-----QEQKQSEGKEDLASRLDALRR 203
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A7S2WTG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTG4_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.980e-34 Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVP-AKPAAETATATEGEDELANRLAALR 354
+NK+M GVV+GMG+ALKSMDVE+IS TM NFEQQFEDMDVRAGYME AM+ ST+ +TPQE VD LI++VADE LELG +DA VP AKPA T +D+LA RLAALR
Sbjct: 91 INKAMVGVVQGMGSALKSMDVEKISATMTNFEQQFEDMDVRAGYMEGAMNSSTSSATPQEDVDSLIKIVADENQLELGAAFEDAA-----VPTAKPAEAEQTEAAPQDDLAARLAALR 203
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A8K1CUU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUU3_PYTOL) HSP 1 Score: 125 bits (313), Expect = 1.220e-33 Identity = 69/118 (58.47%), Postives = 90/118 (76.27%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
+ ++M GVVKGM T + SM+VE+IS+TMD FEQQFED+DVRA YME AMS+ T+M+TP +QVD LIQMVADE GL++ QLD AG + ++P AAE + +D+L+ RLAALRK
Sbjct: 94 LKQNMSGVVKGMDTVMASMNVEKISRTMDQFEQQFEDLDVRAAYMEGAMSNGTSMTTPVDQVDDLIQMVADENGLKVAGQLDSAGMVGTELPTAAAAEK----KSQDDLSMRLAALRK 207
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: K3WSW3_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSW3_GLOUD) HSP 1 Score: 124 bits (310), Expect = 3.840e-33 Identity = 65/118 (55.08%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 4 VNKSMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
+ K+M GVVKGM T + SM+VE+IS+TMD FE+ FEDMDVRA YME AM++ T++STP +QVD LIQMVADE GL++ QLD AG + ++P+ ++ + +D+L+ RLAALRK
Sbjct: 94 LKKNMNGVVKGMDTVMASMNVEKISQTMDQFEKHFEDMDVRAAYMEGAMNNGTSLSTPADQVDDLIQMVADENGLKIAGQLDSAGLVGTELPSAATSDAVKEKKSQDDLSMRLAALRK 211
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: A0A484DVR9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVR9_BRELC) HSP 1 Score: 120 bits (301), Expect = 8.280e-32 Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 13 SMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
+M GVV GM ++SM+VE IS+TMD FE+ FEDMDVR+ YME AMS +T++STP +QVD LIQMVADE GL++ QLD AG +S KVP AE A + +D+L+ RLAALRK
Sbjct: 98 NMSGVVYGMDMVMESMNVENISQTMDQFEKHFEDMDVRSAYMEGAMSSNTSLSTPADQVDDLIQMVADENGLKIAGQLDSAGLVSTKVPI---AEAAREKKSQDDLSMRLAALRK 209
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Match: H3G8P7_PHYRM (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3G8P7_PHYRM) HSP 1 Score: 120 bits (300), Expect = 1.170e-31 Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 13 SMEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPISNKVPAKPAAETATATEGEDELANRLAALRK 357
+M GVVKGM T ++SM+VE+IS+TMD FE+ FEDMDVR+ YME AMS T++STP +QVD LIQMVADE GL++ QLD AG + ++P E A + +D+L+ RLAALRK
Sbjct: 98 NMSGVVKGMDTVMESMNVEKISQTMDQFEKHFEDMDVRSAYMEGAMSSGTSLSTPADQVDDLIQMVADENGLKVAGQLDSAGLVGTELPTT---EAAREKKSQDDLSMRLAALRK 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81961.15862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81961.15862.1 >prot_H-elongata_contig81961.15862.1 ID=prot_H-elongata_contig81961.15862.1|Name=mRNA_H-elongata_contig81961.15862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MEGVVKGMGTALKSMDVERISKTMDNFEQQFEDMDVRAGYMENAMSDSTAback to top mRNA from alignment at H-elongata_contig81961:399..758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81961.15862.1 ID=mRNA_H-elongata_contig81961.15862.1|Name=mRNA_H-elongata_contig81961.15862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig81961:399..758+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81961:399..758+ >mRNA_H-elongata_contig81961.15862.1 ID=mRNA_H-elongata_contig81961.15862.1|Name=mRNA_H-elongata_contig81961.15862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig81961:399..758+ (Himanthalia elongata Himel1 dioecious)back to top |