mRNA_H-elongata_contig8187.15856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8187.15856.1
Unique NamemRNA_H-elongata_contig8187.15856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: D7FIM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM0_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 4.490e-85
Identity = 154/197 (78.17%), Postives = 168/197 (85.28%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPM-VLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRK 588
            R VRPCSYFHVPYHHRKAPFADMRLVPCG CGRKWVAETVL+T+E PE L +RGEG LVEARVCRVHRRQG+ EL AIRVSE+LPFMEYELQRQLMLKLKCLGVNAAF LR+DIQLGP LMVGSI+ATAVYVESLP PPQL+VARPP      GG   +    VL +A +VE+I A+NRQRLQALAPKRRR+  RRK
Sbjct:   89 RTVRPCSYFHVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAPENLISRGEGCLVEARVCRVHRRQGTSELEAIRVSEALPFMEYELQRQLMLKLKCLGVNAAFSLRSDIQLGPRLMVGSISATAVYVESLPTPPQLVVARPPRSLHQDGGXXXDARRRVLALASRVERIGAVNRQRLQALAPKRRRLRGRRK 285
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A7S3H4I0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4I0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 8.730e-50
Identity = 96/195 (49.23%), Postives = 137/195 (70.26%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRR 585
            +P RPC   HVPY+HR APF+ MRLVPC SC RKWV ET+LA+IEPP  LQ +G G+++EARVCR  RR G+GE+ A+++SE LPF+EY+LQRQ++LKLK LG+NAAFG    IQ+G  L++ + T TAV++ESLP+PP + + R          R ++D  + ++ +++E + A+N++ L       R V +RR
Sbjct:  148 KPRRPCVAVHVPYNHRTAPFSFMRLVPCASCRRKWVPETLLASIEPPSLLQVKGSGQMLEARVCR-SRRGGAGEVDAVKISEVLPFVEYDLQRQMILKLKILGMNAAFGYSCKIQVGVDLVIATATCTAVWLESLPSPPPVQIVR------TRESRTQQDLRLASLQRQLEDLMALNKETLDKQHSHNRLVLKRR 335
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A7S4N180_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N180_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.450e-47
Identity = 103/213 (48.36%), Postives = 144/213 (67.61%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRKRTPSTRPILETKVVDAA 639
            RP RPCSY HVPYHHR APFA+M+LVPC  CG+KWV E +LAT+EPPE L  RG G  ++ARVCR  R + +GE  A+ VSE+LPF+EYEL RQLMLKLK LG NAAF L++++ +G  L++ + TATA+Y +++PAP  L ++R          +  ED  ++ + +++E I++ NR  L A+A +R    +RR+     R I E ++  AA
Sbjct:  399 RPARPCSYCHVPYHHRLAPFANMKLVPCLLCGKKWVPEVILATVEPPERLPVRGSGVFIQARVCR-SRPKSTGETDALAVSEALPFLEYELARQLMLKLKVLGRNAAFSLKSEVDVGSQLIIATATATALYCDAMPAPRALEISR------TIAVQDEEDHQLVRLQRQIENISSKNRLWL-AMAAQREAAKKRRE---YARKIKEAQLRKAA 600
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.680e-47
Identity = 114/246 (46.34%), Postives = 135/246 (54.88%), Query Frame = 1 
Query:    7 VRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCL-----------------------------------------------GVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPP-STYSGGRGREDPMVLTMAKK----------------VEQIAAINRQRLQAL 552
            VRPCSY HVPY HR APF  MRL PC  C RKWVA+TVLATIE P  + TRGEG L+EARVCRV RR G  E  AIRVSESLPF+EYELQRQL LKLK L                                               G+NA F L T + +GPSL++G+IT TAVYVE+LP+PP L +A P       +GG    +  +L M KK                +EQ++A NRQRL ++
Sbjct:  633 VRPCSYCHVPYQHRLAPFGSMRLTPCCVCRRKWVAQTVLATIEAPPAMTTRGEGCLIEARVCRVIRRTGVAETDAIRVSESLPFIEYELQRQLSLKLKALAQPILFVSHNSPATAGSVGTTSVLRQRNPHHLLLALCGLYACHVQVMGMNAVFSLETQLAVGPSLLIGTITGTAVYVEALPSPPILRIAPPVAARGMTAGGEQDSEQRLLAMQKKPAMNALLLPAVAWSSQIEQLSATNRQRLMSI 878
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A7S4AET6_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AET6_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.270e-47
Identity = 94/185 (50.81%), Postives = 127/185 (68.65%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALA 555
            R  +PCSY HVPYHHR APF +M+LVPC  CG+KWV E VLAT EPP  L  RG G  ++ARVCR  + + + E  A+ VSE+LPF+EYEL RQLMLKLK LG NAAF L+ ++ +G SL++ ++TATAVY  ++P+P  L ++R          +  ED  ++ + +++EQI+A NRQRL   A
Sbjct:   59 RDAKPCSYCHVPYHHRVAPFTNMKLVPCMLCGKKWVPEVVLATCEPPARLPIRGPGVFIQARVCRTRQPERNSESDALAVSEALPFLEYELARQLMLKLKVLGRNAAFSLKNEVDVGRSLIISTVTATAVYCTAMPSPRILEISR------TIAVQDEEDEKLVKLQRQIEQISAKNRQRLSTAA 237
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A7S2RRS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RRS9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.550e-47
Identity = 81/144 (56.25%), Postives = 108/144 (75.00%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVA 432
            R  RPCSY HVPYHHR APF++M+LVPC  CG+KWV E +LATIEPP  L  RG G  ++ARVCR  R + +GE  A+ VSE+LPF+EYEL RQLMLKLK LG NAAF L++++ +G  L++ + TATA++ +++P P  L ++
Sbjct:   61 RSARPCSYCHVPYHHRLAPFSNMKLVPCLLCGKKWVPEVILATIEPPARLPVRGPGAFIQARVCR-SRPKSTGETDALAVSEALPFLEYELARQLMLKLKVLGRNAAFSLKSEVDVGSQLIIATATATALFCDAMPPPRVLQIS 203
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A448YU60_9STRA (C2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU60_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.740e-46
Identity = 98/197 (49.75%), Postives = 132/197 (67.01%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRKR 591
            R  +PCSY HVPYHHR APF +M+LVPC  CG+KWV E VLAT EPP  L  RG G  ++ARVCR    + + E  A+ VSE+LPF+EYEL RQLMLKLK LG NAAF L+ ++ +G SL++ ++TATAVY  ++P+P  L ++R          +  ED  ++ + +++E+I+A NRQRL   A   R + R RKR
Sbjct:  617 RDAKPCSYCHVPYHHRLAPFTNMKLVPCMLCGKKWVPEVVLATCEPPSRLPIRGPGVFIQARVCRSRPAERNSESDALAVSEALPFLEYELARQLMLKLKVLGRNAAFSLKNEVDVGKSLIISTVTATAVYCTAMPSPRILEISR------TIAVQDEEDQKLVNLQRQIEKISAKNRQRLSTAAQ--RHLERVRKR 805
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A1E7F3B6_9STRA (C2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3B6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.070e-45
Identity = 98/197 (49.75%), Postives = 133/197 (67.51%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRKR 591
            R  +PCS+ HVPYHHR APF +M+LVPC  CG+KWV E +LAT EPP  L  RG G  ++ARVCR    + + E  A+ VSE+LPF+EYEL RQLMLKLK LG NAAF L+ ++ +G SL++ ++TATAVY  ++P+P  L ++R          +  ED  ++ + K++E+I+A NRQRL  L   +R V R RKR
Sbjct:  597 RDAKPCSFCHVPYHHRLAPFTNMKLVPCMLCGKKWVPEVLLATCEPPARLPIRGPGVFIQARVCRSRPPEKNSESDALAVSEALPFLEYELARQLMLKLKVLGRNAAFSLKNEVDVGRSLIISTVTATAVYCTAMPSPRILEISR------TIAVQDEEDHQLVKLQKQIEKISAKNRQRL--LTAAQRHVERVRKR 785
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: A0A7S4VGH9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VGH9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.540e-45
Identity = 97/196 (49.49%), Postives = 134/196 (68.37%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRK 588
            RP RPCSY HVPYHHR APF +M+LVPC  CG+KWV E +LAT+EPP  L  RG+G  ++ARV R  R + + E  A+ VSESLPF+EYEL RQLM+KLK LG NAAF L++++ +G  L++G+ TATA+Y +++P P  L ++R          +  ED  ++ +  ++E+I+  NR RL AL+ +RR    RRK
Sbjct:  354 RPARPCSYCHVPYHHRLAPFTNMKLVPCLLCGKKWVPEVILATVEPPARLPVRGQGVFIQARVMR-SRPKATNETDALAVSESLPFLEYELARQLMVKLKILGRNAAFSLKSEVDVGSQLIIGTATATALYCDAMPPPRVLEISR------TIAVQDEEDHQLVKLQHQIEKISERNRHRL-ALSAQRRGERLRRK 541
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BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Match: K0T113_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T113_THAOC)

HSP 1 Score: 176 bits (447), Expect = 2.760e-44
Identity = 91/178 (51.12%), Postives = 122/178 (68.54%), Query Frame = 1 
Query:    1 RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETLQTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLKCLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPSTYSGGRGREDPMVLTMAKKVEQIAAINR 534
            R  +PCSY HVPYHHR+APF +M+LVPC  CG+KWV ET+LAT EPP  L  RG G  ++ARVCR  R + SGE  A+ VSE+LPF+E++L RQLMLKLK LG NAAFGL++++ +G  L++ + TATAVY E++P P  L + R             ED  ++ + + +E I+A NR
Sbjct:  368 RLAKPCSYCHVPYHHRQAPFQNMKLVPCQMCGKKWVPETILATCEPPSRLPIRGHGTFIQARVCRT-RPKASGENDALAVSEALPFLEFDLARQLMLKLKILGRNAAFGLKSEVDVGGQLIIATATATAVYCEAMPPPRVLEIDR------TIACLDEEDDQLVRLQRLIETISARNR 538
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8187.15856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM0_ECTSI4.490e-8578.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3H4I0_9STRA8.730e-5049.23Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S4N180_9STRA1.450e-4748.36Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A836CKY6_9STRA1.680e-4746.34C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S4AET6_9STRA4.270e-4750.81Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2RRS9_9STRA4.550e-4756.25Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A448YU60_9STRA1.740e-4649.75C2 domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A1E7F3B6_9STRA1.070e-4549.75C2 domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A7S4VGH9_9STRA4.540e-4549.49Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
K0T113_THAOC2.760e-4451.12Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8187contigH-elongata_contig8187:6424..10063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.0
Seed ortholog evalue1.5e-77
Seed eggNOG ortholog2880.D7FIM0
Preferred nameC2CD5
KEGG koko:K20051
GOsGO:0000149,GO:0001505,GO:0001726,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0010827,GO:0010828,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030276,GO:0030659,GO:0031090,GO:0031252,GO:0031253,GO:0031256,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032587,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034762,GO:0034764,GO:0038028,GO:0042221,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0046324,GO:0046326,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048791,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055085,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065002,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090087,GO:0090174,GO:0090313,GO:0090314,GO:0090316,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:1900076,GO:1900078,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903305,GO:1903530,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2001273,GO:2001275
EggNOG free text desc.insulin receptor signaling pathway via phosphatidylinositol 3-kinase
EggNOG OGsKOG1031@1,KOG1031@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1365
Cds size1365
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8187.15856.1prot_H-elongata_contig8187.15856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8187 6424..10063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931226.6648602-CDS-H-elongata_contig8187:6423..65671622931226.6648602-CDS-H-elongata_contig8187:6423..6567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 6424..6567 +
1691679749.952995-CDS-H-elongata_contig8187:6423..65671691679749.952995-CDS-H-elongata_contig8187:6423..6567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 6424..6567 +
1622931226.6814473-CDS-H-elongata_contig8187:7328..74451622931226.6814473-CDS-H-elongata_contig8187:7328..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 7329..7445 +
1691679749.9657154-CDS-H-elongata_contig8187:7328..74451691679749.9657154-CDS-H-elongata_contig8187:7328..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 7329..7445 +
1622931226.6954317-CDS-H-elongata_contig8187:7902..79801622931226.6954317-CDS-H-elongata_contig8187:7902..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 7903..7980 +
1691679749.9743247-CDS-H-elongata_contig8187:7902..79801691679749.9743247-CDS-H-elongata_contig8187:7902..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 7903..7980 +
1622931226.7130551-CDS-H-elongata_contig8187:8744..89511622931226.7130551-CDS-H-elongata_contig8187:8744..8951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 8745..8951 +
1691679749.984628-CDS-H-elongata_contig8187:8744..89511691679749.984628-CDS-H-elongata_contig8187:8744..8951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 8745..8951 +
1622931226.725722-CDS-H-elongata_contig8187:9244..100631622931226.725722-CDS-H-elongata_contig8187:9244..10063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 9245..10063 +
1691679749.994048-CDS-H-elongata_contig8187:9244..100631691679749.994048-CDS-H-elongata_contig8187:9244..10063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 9245..10063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8187.15856.1

>prot_H-elongata_contig8187.15856.1 ID=prot_H-elongata_contig8187.15856.1|Name=mRNA_H-elongata_contig8187.15856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=455bp
RPVRPCSYFHVPYHHRKAPFADMRLVPCGSCGRKWVAETVLATIEPPETL
QTRGEGRLVEARVCRVHRRQGSGELAAIRVSESLPFMEYELQRQLMLKLK
CLGVNAAFGLRTDIQLGPSLMVGSITATAVYVESLPAPPQLMVARPPPPS
TYSGGRGREDPMVLTMAKKVEQIAAINRQRLQALAPKRRRVSRRRKRTPS
TRPILETKVVDAAIIDDDHPSQSPLFSVRSVSATLKNPRDSCPGAAHGSG
SERRRRACDGGGDNGRGSTTQPPMTHETREAVYRTEETASRENGAAKEGV
PVGVSTGTGSVDDEEEKRPVEELTTKDDESRRAVSTTFAADNVAFSSPGA
HESQKEHPCPPSDASTVGAREVTGGGDGGGDTGGDAGHDDDHTHEGQDGH
RDDVHSPSEMGTLSDHEEDSDGASSSSSSSSSSSSSSSSSSSSSSSSHNP
ILGQS
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mRNA from alignment at H-elongata_contig8187:6424..10063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8187.15856.1 ID=mRNA_H-elongata_contig8187.15856.1|Name=mRNA_H-elongata_contig8187.15856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3640bp|location=Sequence derived from alignment at H-elongata_contig8187:6424..10063+ (Himanthalia elongata Himel1 dioecious)
CGGCCGGTTCGACCATGCTCCTACTTCCACGTTCCCTATCACCATCGCAA
GGCGCCGTTCGCCGATATGCGTCTGGTGCCGTGCGGCTCGTGCGGCCGCA
AGTGGGTCGCAGAGACGGTCCTTGCGACGATCGAACCCCCGGAGGTATGT
AGTAGGACGGCGTGTTCGATGCGGGAAAGGGAAGATAAGGGAAGGGTTCC
GGATCCTGCGCATAATCCTACCCTCGTGAATCGCCGCTCAGCTTTTTTTG
TAGGCCTCTTCCGTGTGTAAAAGTGTAGTAGAGCTATCAAATCAAACCAA
ACGATTTTGTGCTCACAAATACTCGAACCTGACGATACTTGATCCACTGA
ACTGCACCTCTCATGGCGCTAAGAATGCGTGGATGTTTGGAGGGTTAAAG
TGATTTCATATATTTAATATATATATATATATTCTTGTTCCTGAAAAACA
TATTAATTCAGTTCAAACCTTTCAAACATCCACACTTTCCTTACATCATA
CACGGTGAAGTTGGTTTGGCGTCTCCACATGATGCTATGGTAATGATGAG
TAATGTTAAATGTACAGTATAATGGTGGGATTTTCCCGCCAACATTATAC
CGTTGACCCGATGCAATTATCGTTGAAGAATCTCGTTGTAGTAAATGTAA
ACATTCGAACCCGACGATAGTTTGTCCCCTGGACTGCACATCTAACGGTG
CTATAAGAAGGCGTGGATGATCGGAGGGTTGGAATAAGTTCATATGTTTT
TGCAAAGATAAAACGAAGAGAAAAGGTTGACGATTTGTTTATCTCTCTTC
CATCATTTGTTTATTTGCGTGTTGTTTGGTGGGGGGGGGACCCCTCTTCA
AAATTTGTCCATATGGTTTGATTGTCGATTGATTGGTCGGGGCGGCGGCG
GGCAGACCTTGCAAACGAGGGGAGAAGGGCGCTTGGTCGAGGCTCGCGTT
TGCAGGGTCCATCGGCGACAGGGATCGGGCGAGCTGGCTGCCATCCGCGT
CTCGGAATCCTTGCCTTTCATGGTGAGAACAAAAACCGTCTCGATAAAAG
TACGTTGTACATGTATGCAGAAGCATATGCTTGTACTTCGGTACCACACT
TTTGTGGAGAGATGCCAGAAGATTCGCCGAGATGCCAGAAGTGACCCTCT
TATTCCTTTTCGCCATCGCTTTGACACGTACCACGGGAGTGAGTTCGCGG
GCGATATCCTGAGCGGCCGAAGAGCTCATTTTCCCCGCGGCGGTATTCAA
GAAAGGATGCGCGCGACTTGGATGGTACCGTCTGTGTGTACTGCTCCACT
CGACCTACCCGTTTACAACTCTTATATACCTATTATCTCTTTTTCTCTCT
CGTTCAATGCACACATATTTACCGCAGACCCCCAGTAGTGGCGGCTTGTT
TCTGCGACGTATACCACTGTTGATGATTTCACATCGGAGTTGGCGTTATA
TTTCTGCGACCTCTTGCTTCTATACGCAGGAGTACGAGCTCCAGCGACAA
TTGATGCTGAAGCTTAAGTGCCTCGGCGTAAACGCTGCCTTCGGCCTCCG
CACAGATGTGAGACAAATCTATTCAAAAACAAAAGCTTAGACTATTGCTT
CCCCCCGCCCCCCAAGCTCCGGTATATATGTATATATATAATTATTCATT
GTTTTTTATGTCGCACCTTTTGTCGATGGAGCCTTTCAACCTAGGCTATC
AATCCTCGCTCACCACAACGCTGTCGATCCTGCCTTAGGTCCTACAGTAA
GGAATCAGCCCATCTCTCTCCCTCTCCCCGGTTAGTTAATGCCTGCTACA
GTACGATTTTTTATCGATATCGATTCAAGTTGAGCACACTCCTACCTGTC
TTCAACCGCCATGGTAGAACTTTGCTTACAGTACTCTCTCCCTCCCTCAA
TGATTAGTGATTACTCATTAGTGATTAGTGATTACTCCGTGACGGAAACA
AGAAAAGAACCATTTAAAATTGAACTCCTCCCCCACGGAGTAGTGATTGA
GGTAATTATTGCTATCAATTCAATCGTGTATCCGCACAACGTGAAGTGCT
ACCCTGAAGTTATGCCGGCAGCGTTTCCTTCTGACGCCAAGTTGTTGGAA
AAGTAGGCGCAGGTCTTGAAGATTTGACCTCTGCACCCCGAGAGTCGGTA
GCGCGCGACCAGATACACACACACACACACACACACACACACACACTGAT
AGCTTGAGCCTTAATCTTCTGTCGCTTATATACACGTCGCGAGGGGGTTT
GTCTCGCTTATCCACCCCCCATCCCCTTCCTTTATCGCCGGGGCCTTGAA
TTTATCGCCCATCACGCGCAGATTCAACTCGGACCGTCCCTCATGGTGGG
ATCCATCACAGCGACGGCCGTGTACGTGGAATCGTTGCCCGCGCCGCCAC
AGCTGATGGTGGCTCGGCCCCCGCCTCCTTCCACCTACAGCGGAGGAAGG
GGGAGGGAAGACCCGATGGTTCTCACGATGGCCAAGAAAGTGGAGCAGAT
TGCCGCGATTAATCGGCAGCGGCTGCAGGTGAGAGATGGCATATGTGTGA
CTGCCGAAAACGTTGAGAGAAACGCTAGGGCGGGGAGTGCGCGGCTGGTA
TTGCGAGAGCGGCGAATGGTGCTCCCGCCGAAAATCGCTAATATTTTTCG
GTCATCAACACGGAGGACACGGAGGAAATAGCGCGATAGGACGGTACAAG
TATTTTGCCTCGTTGCATCCCCTGCTTCTGCCTCCACCACCGCCGCCGCC
GCAGAACTACACTATGCGTGCGTGTGTGCCCCTCCATAACCTTTTCTGGT
CCCGCGCGTCGGATCAATCAGGCGTTAGCGCCGAAGAGGCGACGAGTGAG
CCGTCGGAGAAAGCGTACCCCGTCCACGCGTCCGATTCTTGAGACGAAGG
TTGTGGATGCCGCTATCATCGACGATGATCACCCGTCTCAATCTCCACTA
TTTTCCGTCCGGTCGGTGTCCGCCACTCTGAAAAATCCCCGTGATTCCTG
CCCCGGTGCCGCCCACGGTAGTGGTAGTGAGAGACGGAGGCGCGCCTGCG
ACGGTGGCGGTGATAACGGCCGTGGGTCAACAACGCAACCACCCATGACG
CATGAGACGAGAGAGGCTGTGTATCGAACAGAGGAAACCGCGAGCCGAGA
GAACGGCGCCGCCAAGGAAGGGGTGCCGGTCGGCGTCTCGACGGGCACTG
GCAGCGTCGATGACGAGGAAGAGAAAAGGCCGGTCGAGGAGCTCACCACC
AAGGATGACGAGAGTAGGCGCGCGGTATCGACTACCTTTGCCGCTGATAA
TGTCGCTTTTTCTTCTCCCGGTGCCCACGAGAGTCAAAAGGAACATCCCT
GCCCGCCCTCGGATGCATCGACCGTTGGCGCACGCGAGGTGACTGGCGGA
GGTGATGGAGGTGGTGACACCGGGGGCGACGCGGGGCACGATGATGACCA
CACCCACGAGGGGCAAGACGGTCACCGTGACGATGTGCACTCGCCGTCGG
AGATGGGAACGCTATCAGATCATGAGGAGGATTCAGACGGCGCATCGTCT
TCTTCCTCGTCATCGTCATCGTCATCGTCATCATCCTCTTCCTCTTCCTC
GTCGTCGTCTTCCTCTCATAACCCGATACTAGGACAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig8187:6424..10063+

>mRNA_H-elongata_contig8187.15856.1 ID=mRNA_H-elongata_contig8187.15856.1|Name=mRNA_H-elongata_contig8187.15856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2730bp|location=Sequence derived from alignment at H-elongata_contig8187:6424..10063+ (Himanthalia elongata Himel1 dioecious)
CGGCCGGTTCGACCATGCTCCTACTTCCACGTTCCCTATCACCATCGCAA
GGCGCCGTTCGCCGATATGCGTCTGGTGCCGTGCGGCTCGTGCGGCCGCA
AGTGGGTCGCAGAGACGGTCCTTGCGACGATCGAACCCCCGGAGCGGCCG
GTTCGACCATGCTCCTACTTCCACGTTCCCTATCACCATCGCAAGGCGCC
GTTCGCCGATATGCGTCTGGTGCCGTGCGGCTCGTGCGGCCGCAAGTGGG
TCGCAGAGACGGTCCTTGCGACGATCGAACCCCCGGAGACCTTGCAAACG
AGGGGAGAAGGGCGCTTGGTCGAGGCTCGCGTTTGCAGGGTCCATCGGCG
ACAGGGATCGGGCGAGCTGGCTGCCATCCGCGTCTCGGAATCCTTGCCTT
TCATGACCTTGCAAACGAGGGGAGAAGGGCGCTTGGTCGAGGCTCGCGTT
TGCAGGGTCCATCGGCGACAGGGATCGGGCGAGCTGGCTGCCATCCGCGT
CTCGGAATCCTTGCCTTTCATGGAGTACGAGCTCCAGCGACAATTGATGC
TGAAGCTTAAGTGCCTCGGCGTAAACGCTGCCTTCGGCCTCCGCACAGAT
GAGTACGAGCTCCAGCGACAATTGATGCTGAAGCTTAAGTGCCTCGGCGT
AAACGCTGCCTTCGGCCTCCGCACAGATATTCAACTCGGACCGTCCCTCA
TGGTGGGATCCATCACAGCGACGGCCGTGTACGTGGAATCGTTGCCCGCG
CCGCCACAGCTGATGGTGGCTCGGCCCCCGCCTCCTTCCACCTACAGCGG
AGGAAGGGGGAGGGAAGACCCGATGGTTCTCACGATGGCCAAGAAAGTGG
AGCAGATTGCCGCGATTAATCGGCAGCGGCTGCAGATTCAACTCGGACCG
TCCCTCATGGTGGGATCCATCACAGCGACGGCCGTGTACGTGGAATCGTT
GCCCGCGCCGCCACAGCTGATGGTGGCTCGGCCCCCGCCTCCTTCCACCT
ACAGCGGAGGAAGGGGGAGGGAAGACCCGATGGTTCTCACGATGGCCAAG
AAAGTGGAGCAGATTGCCGCGATTAATCGGCAGCGGCTGCAGGCGTTAGC
GCCGAAGAGGCGACGAGTGAGCCGTCGGAGAAAGCGTACCCCGTCCACGC
GTCCGATTCTTGAGACGAAGGTTGTGGATGCCGCTATCATCGACGATGAT
CACCCGTCTCAATCTCCACTATTTTCCGTCCGGTCGGTGTCCGCCACTCT
GAAAAATCCCCGTGATTCCTGCCCCGGTGCCGCCCACGGTAGTGGTAGTG
AGAGACGGAGGCGCGCCTGCGACGGTGGCGGTGATAACGGCCGTGGGTCA
ACAACGCAACCACCCATGACGCATGAGACGAGAGAGGCTGTGTATCGAAC
AGAGGAAACCGCGAGCCGAGAGAACGGCGCCGCCAAGGAAGGGGTGCCGG
TCGGCGTCTCGACGGGCACTGGCAGCGTCGATGACGAGGAAGAGAAAAGG
CCGGTCGAGGAGCTCACCACCAAGGATGACGAGAGTAGGCGCGCGGTATC
GACTACCTTTGCCGCTGATAATGTCGCTTTTTCTTCTCCCGGTGCCCACG
AGAGTCAAAAGGAACATCCCTGCCCGCCCTCGGATGCATCGACCGTTGGC
GCACGCGAGGTGACTGGCGGAGGTGATGGAGGTGGTGACACCGGGGGCGA
CGCGGGGCACGATGATGACCACACCCACGAGGGGCAAGACGGTCACCGTG
ACGATGTGCACTCGCCGTCGGAGATGGGAACGCTATCAGATCATGAGGAG
GATTCAGACGGCGCATCGTCTTCTTCCTCGTCATCGTCATCGTCATCGTC
ATCATCCTCTTCCTCTTCCTCGTCGTCGTCTTCCTCTCATAACCCGATAC
TAGGACAGTCCGCGTTAGCGCCGAAGAGGCGACGAGTGAGCCGTCGGAGA
AAGCGTACCCCGTCCACGCGTCCGATTCTTGAGACGAAGGTTGTGGATGC
CGCTATCATCGACGATGATCACCCGTCTCAATCTCCACTATTTTCCGTCC
GGTCGGTGTCCGCCACTCTGAAAAATCCCCGTGATTCCTGCCCCGGTGCC
GCCCACGGTAGTGGTAGTGAGAGACGGAGGCGCGCCTGCGACGGTGGCGG
TGATAACGGCCGTGGGTCAACAACGCAACCACCCATGACGCATGAGACGA
GAGAGGCTGTGTATCGAACAGAGGAAACCGCGAGCCGAGAGAACGGCGCC
GCCAAGGAAGGGGTGCCGGTCGGCGTCTCGACGGGCACTGGCAGCGTCGA
TGACGAGGAAGAGAAAAGGCCGGTCGAGGAGCTCACCACCAAGGATGACG
AGAGTAGGCGCGCGGTATCGACTACCTTTGCCGCTGATAATGTCGCTTTT
TCTTCTCCCGGTGCCCACGAGAGTCAAAAGGAACATCCCTGCCCGCCCTC
GGATGCATCGACCGTTGGCGCACGCGAGGTGACTGGCGGAGGTGATGGAG
GTGGTGACACCGGGGGCGACGCGGGGCACGATGATGACCACACCCACGAG
GGGCAAGACGGTCACCGTGACGATGTGCACTCGCCGTCGGAGATGGGAAC
GCTATCAGATCATGAGGAGGATTCAGACGGCGCATCGTCTTCTTCCTCGT
CATCGTCATCGTCATCGTCATCATCCTCTTCCTCTTCCTCGTCGTCGTCT
TCCTCTCATAACCCGATACTAGGACAGTCC
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