mRNA_H-elongata_contig8187.15855.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8187.15855.1
Unique NamemRNA_H-elongata_contig8187.15855.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: D7FIL9_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.100e-51
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:    1 KVVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRR------TEADRVNH 291
            KVVGLV+ELVVDNDPEYQWMDNFRQARTSNESRQSLL+KLDATVRRQLGKKVLDLGCNAVLAYQQ+FDVEGDSGIVARAYGTACVIQRR      T+A  ++H
Sbjct:  171 KVVGLVDELVVDNDPEYQWMDNFRQARTSNESRQSLLYKLDATVRRQLGKKVLDLGCNAVLAYQQDFDVEGDSGIVARAYGTACVIQRREQHSDITKASELSH 273
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: A0A7S2W4C5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W4C5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.340e-32
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    4 VVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVI 258
            V+G VEELVVD+DPEY+W DNFR AR SNESRQ LL++L   VRRQ+GKK+L+LG N+V+ YQQNFDVEGDSG+VARA GTAC+I
Sbjct:  175 VLGFVEELVVDSDPEYEWNDNFRTARKSNESRQGLLYRLSNQVRRQIGKKILELGGNSVVGYQQNFDVEGDSGLVARASGTACII 259
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.700e-29
Identity = 63/87 (72.41%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 VVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQR 264
            V G VEEL+V+NDPE+QW DNFRQAR+SNESRQSLLFKLDA           D G NAVL Y Q+FD+EGDSGIVARAYGTACVIQR
Sbjct:  189 VFGFVEELLVENDPEFQWRDNFRQARSSNESRQSLLFKLDAA----------DAGGNAVLGYLQDFDIEGDSGIVARAYGTACVIQR 265
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: A0A1Z5KM14_FISSO (C2 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM14_FISSO)

HSP 1 Score: 118 bits (296), Expect = 5.870e-29
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    4 VVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRR 267
            V G VEELVV +DPE++W DNFR+AR S+E+RQ+LL+ LDA+VRR++ K V ++G NAV+ Y QNFDVEGDSGIVAR YGTA ++QRR
Sbjct:  228 VFGFVEELVVADDPEFEWSDNFRRARESHETRQTLLYLLDASVRRRMCKTVQEMGANAVIGYFQNFDVEGDSGIVARTYGTAVLLQRR 315
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: B8BXV2_THAPS (C2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV2_THAPS)

HSP 1 Score: 118 bits (295), Expect = 7.890e-29
Identity = 57/88 (64.77%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    4 VVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRR 267
            V G VEELVV +DPE++W DNF QARTS+E+RQ+L++ LDA VRR++ KKVL+LG NAVL Y QNFD+EGDSG+VAR +GT  +IQ++
Sbjct:  285 VFGFVEELVVADDPEFEWNDNFNQARTSHETRQTLMYLLDAKVRRRMCKKVLELGGNAVLGYHQNFDMEGDSGLVARTFGTCVLIQKK 372
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: F0ZFV3_DICPU (C2 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFV3_DICPU)

HSP 1 Score: 117 bits (292), Expect = 2.010e-28
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:   10 GLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEADRV 285
              VEEL+V+NDPEY W D FR +R SN  RQ LL+ L   +RRQ+GKKV+D+G NAVL Y+Q+FD+EGDSGIVAR YGTA  +++ TEAD V
Sbjct:  165 SFVEELIVENDPEYHWTDTFRASRLSNFERQFLLYTLSGKLRRQMGKKVVDMGGNAVLGYKQHFDLEGDSGIVARGYGTAVTLRKVTEADLV 256
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: F4Q7C9_CAVFA (C2 calcium-dependent membrane targeting domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q7C9_CAVFA)

HSP 1 Score: 116 bits (290), Expect = 3.750e-28
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   10 GLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEAD 279
            G VEEL+V++DPEY W D F+ +R SN  RQ LL+ L   +RRQ+GKKVLD+G NAVL Y+Q+FD+EGDSGIVAR YGTA  ++R T+AD
Sbjct:  175 GFVEELIVESDPEYHWTDTFKASRLSNFERQFLLYTLSGKLRRQMGKKVLDMGGNAVLEYKQHFDLEGDSGIVARGYGTAVTLRRVTDAD 264
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BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: UPI00064490FC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064490FC)

HSP 1 Score: 115 bits (287), Expect = 9.600e-28
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   16 VEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEADRVN 288
            VEEL+V++DPEY W D FR +R SN  RQ+LL+ L   +RRQ+GKK+LD+G NAVL Y+Q+FD+EGDSGIVAR YGTA  +++ TE D V+
Sbjct:  166 VEELIVESDPEYHWTDTFRASRLSNFERQTLLYTLSGKLRRQMGKKILDIGGNAVLGYKQHFDLEGDSGIVARGYGTAVTLRKITEMDLVS 256
[Close]
BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: Q55DS5_DICDI (C2 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55DS5_DICDI)

HSP 1 Score: 114 bits (286), Expect = 1.320e-27
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:   10 GLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEADRV 285
              VEEL+V+NDPEY W D FR +R SN  RQ LL+ L   +RRQ+GKKVLD+G NAVL Y+Q+FD+EGDSGIVAR YGTA  +++  E+D +
Sbjct:  165 SFVEELIVENDPEYHWTDTFRASRLSNFERQYLLYTLSGKLRRQMGKKVLDMGGNAVLGYKQHFDLEGDSGIVARGYGTAVTLRKVVESDLI 256
[Close]
BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Match: A0A8J4UQU9_9MYCE (C2 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UQU9_9MYCE)

HSP 1 Score: 113 bits (282), Expect = 4.550e-27
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:   10 GLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGKKVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEADRV 285
              VEEL+V+NDPEY W D FR +R SN  RQ LL+ L   +RRQ+GKKVL++G NAVL Y+Q+FD EGDSGIVAR YGTA  +++ TE D +
Sbjct:  165 SFVEELIVENDPEYHWTDTFRASRLSNFERQMLLYTLTGKLRRQMGKKVLEMGGNAVLGYKQHFDFEGDSGIVARGYGTAVTLRKVTENDLI 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8187.15855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIL9_ECTSI2.100e-5186.41C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S2W4C5_9STRA1.340e-3272.94Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A836CKY6_9STRA1.700e-2972.41C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A1Z5KM14_FISSO5.870e-2965.91C2 domain-containing protein n=2 Tax=Fistulifera s... [more]
B8BXV2_THAPS7.890e-2964.77C2 domain-containing protein (Fragment) n=1 Tax=Th... [more]
F0ZFV3_DICPU2.010e-2861.96C2 domain-containing protein n=1 Tax=Dictyostelium... [more]
F4Q7C9_CAVFA3.750e-2862.22C2 calcium-dependent membrane targeting domain-con... [more]
UPI00064490FC9.600e-2860.44hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
Q55DS5_DICDI1.320e-2759.78C2 domain-containing protein n=1 Tax=Dictyostelium... [more]
A0A8J4UQU9_9MYCE4.550e-2759.78C2 domain-containing protein n=1 Tax=Polysphondyli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8187contigH-elongata_contig8187:492..1176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.4e-42
Seed eggNOG ortholog2880.D7FIL9
Preferred nameC2CD5
KEGG koko:K20051
GOsGO:0000149,GO:0001505,GO:0001726,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0010827,GO:0010828,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030276,GO:0030659,GO:0031090,GO:0031252,GO:0031253,GO:0031256,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032587,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034762,GO:0034764,GO:0038028,GO:0042221,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0046324,GO:0046326,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048791,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055085,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065002,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090087,GO:0090174,GO:0090313,GO:0090314,GO:0090316,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:1900076,GO:1900078,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903305,GO:1903530,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2001273,GO:2001275
EggNOG free text desc.insulin receptor signaling pathway via phosphatidylinositol 3-kinase
EggNOG OGsKOG1031@1,KOG1031@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931226.7756925-CDS-H-elongata_contig8187:491..6441622931226.7756925-CDS-H-elongata_contig8187:491..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 492..644 +
1691679750.0049293-CDS-H-elongata_contig8187:491..6441691679750.0049293-CDS-H-elongata_contig8187:491..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 492..644 +
1622931226.790646-CDS-H-elongata_contig8187:1038..11761622931226.790646-CDS-H-elongata_contig8187:1038..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 1039..1176 +
1691679750.0201087-CDS-H-elongata_contig8187:1038..11761691679750.0201087-CDS-H-elongata_contig8187:1038..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8187 1039..1176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8187.15855.1prot_H-elongata_contig8187.15855.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8187 492..1176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8187.15855.1

>prot_H-elongata_contig8187.15855.1 ID=prot_H-elongata_contig8187.15855.1|Name=mRNA_H-elongata_contig8187.15855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
KVVGLVEELVVDNDPEYQWMDNFRQARTSNESRQSLLFKLDATVRRQLGK
KVLDLGCNAVLAYQQNFDVEGDSGIVARAYGTACVIQRRTEADRVNH
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mRNA from alignment at H-elongata_contig8187:492..1176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8187.15855.1 ID=mRNA_H-elongata_contig8187.15855.1|Name=mRNA_H-elongata_contig8187.15855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=685bp|location=Sequence derived from alignment at H-elongata_contig8187:492..1176+ (Himanthalia elongata Himel1 dioecious)
AAAGTGGTGGGACTGGTGGAGGAACTCGTCGTAGACAACGACCCGGAGTA
TCAGTGGATGGACAACTTTCGACAGGCGCGCACGAGCAACGAAAGCCGAC
AGAGCCTGCTCTTCAAGCTCGACGCAACCGTTCGTAGACAGCTGGGGAAG
AAGGTGTGCGCAGCCGACACCGATGTCATCGCTGCCGCTGCCGCTCTGCC
TCTGCGGTACCGCCGAGAGTTGACTCTCACCCTTTCGTTTCAAATAGTAT
TACATAGTAGTATTAGTCCAAAGGGGTTCTGCGTAACAACCGGCATATAT
GAGACACAACGGAAGCACGCACGCGCAAGTCGGCACACTTCTTCCCTGGA
AACACTCGAGGACTGGCACCCTCCCACTGAAATCACCCAGCGTGCCCCCA
TTTCCCACCGAAATTATCAGCTCTCTCAAGATATCCCCCCGCCCCACCCA
CCACACGCTTAACTCAACCAAGACCACCTGCCCCCGCCTCGCCTCTTTGT
CTCTTCTCTCTTCTCTCCCCTCTCCCTCTCTTGTTGCCTTCGCAAAGGTG
CTAGACCTCGGGTGCAACGCGGTCCTGGCTTATCAGCAGAACTTTGACGT
GGAGGGAGACAGCGGCATCGTGGCTAGGGCCTACGGAACGGCGTGCGTGA
TTCAGAGGAGAACAGAGGCCGACAGGGTCAATCAT
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Coding sequence (CDS) from alignment at H-elongata_contig8187:492..1176+

>mRNA_H-elongata_contig8187.15855.1 ID=mRNA_H-elongata_contig8187.15855.1|Name=mRNA_H-elongata_contig8187.15855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig8187:492..1176+ (Himanthalia elongata Himel1 dioecious)
AAAGTGGTGGGACTGGTGGAGGAACTCGTCGTAGACAACGACCCGGAGTA
TCAGTGGATGGACAACTTTCGACAGGCGCGCACGAGCAACGAAAGCCGAC
AGAGCCTGCTCTTCAAGCTCGACGCAACCGTTCGTAGACAGCTGGGGAAG
AAGAAAGTGGTGGGACTGGTGGAGGAACTCGTCGTAGACAACGACCCGGA
GTATCAGTGGATGGACAACTTTCGACAGGCGCGCACGAGCAACGAAAGCC
GACAGAGCCTGCTCTTCAAGCTCGACGCAACCGTTCGTAGACAGCTGGGG
AAGAAGGTGCTAGACCTCGGGTGCAACGCGGTCCTGGCTTATCAGCAGAA
CTTTGACGTGGAGGGAGACAGCGGCATCGTGGCTAGGGCCTACGGAACGG
CGTGCGTGATTCAGAGGAGAACAGAGGCCGACAGGGTCAATCATGTGCTA
GACCTCGGGTGCAACGCGGTCCTGGCTTATCAGCAGAACTTTGACGTGGA
GGGAGACAGCGGCATCGTGGCTAGGGCCTACGGAACGGCGTGCGTGATTC
AGAGGAGAACAGAGGCCGACAGGGTCAATCAT
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