mRNA_H-elongata_contig81809.15849.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A6H5K5N1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N1_9PHAE) HSP 1 Score: 363 bits (932), Expect = 2.200e-113 Identity = 170/229 (74.24%), Postives = 204/229 (89.08%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADFGGK 687
LP WYTDSEV RV+WLNK+L K+W +AS AT+ +F TTIQPILDS RPP I+ALGF+KVSLGTIPPKVVGIR LE KD+KAV+DIDLRWAGNAEF++EAGVKPVPLL+TLNKICFSGR+RVELAPLVP+FPCFGA+ LTFMEKPFID +F LGKL VMSIGPGD++VG +V + I+N++ GLMVFP K+V+P+LD+QD++ L+NPTP+GVV+LT+VG D L AAD GGK
Sbjct: 902 LPRWYTDSEVERVEWLNKMLDKMWVSASTATQDLFATTIQPILDSYRPPGISALGFKKVSLGTIPPKVVGIRALEMKDDKAVIDIDLRWAGNAEFMLEAGVKPVPLLITLNKICFSGRMRVELAPLVPVFPCFGAVGLTFMEKPFIDLSFKLGKLNVMSIGPGDMNVGALVSEHIKNIVAGLMVFPVKLVVPILDNQDIVGLSNPTPTGVVQLTIVGCDKLLAADIGGK 1130
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A836CNP9_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNP9_9STRA) HSP 1 Score: 228 bits (581), Expect = 2.620e-65 Identity = 100/217 (46.08%), Postives = 158/217 (72.81%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLM--VFPTKMVIPLLDDQDLLALANPTPSGVVELTV 645
LP W++DSE RV+WLNK+L+ +WP ASGAT+ M + + P+L +P I+ LGFR +SLGTI P+VVGIRT ++ ++ V+D++++W GN + VIE G P+P+ +TL+ I FSG++R EL+PLVP+ PCFG + + FME+P++DF F +G +++MS+GP +L++ V + V+ ++ ++P KMVIP+++ +DL LA P P+GV++L V
Sbjct: 431 LPKWFSDSETERVEWLNKLLQHMWPHASGATDAMVREMVDPMLAEYKPAAIDKLGFRVISLGTIAPRVVGIRTFDSNESCVVLDMEMKWNGNPKIVIEVGRSPLPITITLSNIRFSGKVRAELSPLVPLVPCFGNLSVCFMERPYVDFTFKVGAVDLMSLGPAELNIASAVSAVTKMVLQDIVPVLYPQKMVIPIIEPKDLAGLAAPAPTGVLQLEV 647
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: I2CP21_NANGC (Plant synaptotagmin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP21_NANGC) HSP 1 Score: 208 bits (530), Expect = 2.380e-60 Identity = 96/227 (42.29%), Postives = 154/227 (67.84%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIR-NVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADF 678
LPAW+ DS+V R W+ +L+K+W SG TE + T +QP+LD+ RP IN L K LGT+ P V G+R +ET ++ +D+ + +AGN + V+ G K +PL++ L+++ F G++R+EL PL+P P FGAI TFME+P++DF+F + L+VM++G ++V +V + I+ NV+ G +++P ++VIP+++D DL L NP P G++ ++V+ A NLR AD
Sbjct: 79 LPAWFYDSDVERSAWMTAVLQKMWAAVSGMTEKIVMTYVQPVLDTYRPSIINHLEIVKCRLGTLAPTVTGVRFVETPEDVVRLDVHISYAGNPDIVLAVGYKGLPLILELSEVQFRGKIRIELNPLMPDIPGFGAITATFMEEPYLDFSFKVASLDVMAVGAPAMNVADIVTNIIKENVLKGFLLYPAQLVIPMIEDVDLERLRNPAPIGILSVSVLSARNLRIADI 305
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A835YTN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN3_9STRA) HSP 1 Score: 213 bits (541), Expect = 4.000e-60 Identity = 110/307 (35.83%), Postives = 170/307 (55.37%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLR----------------------------------------WAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNV--------------------------------------INGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADFGGK 687
LP W+ ++V RV+W+NK+L+++WP A+GA + KT ++P+L+ +PP + L F+KV LGT P+V+G+RT+ T N A +++++R WAG+ +FV+E G +PL VTL+KI FSG+LR EL+PL+P PCFGA+ +TFME+PFIDF F +G L+VMSIG GD+SV + ++++ I +M++P K+VIP++D D+ L NP+P GV++L ++GA+ L+ AD GK
Sbjct: 213 LPFWFYGTDVERVEWMNKLLQQMWPHATGAAIVIVKTIVEPMLEEYKPPGVTTLKFQKVFLGTFAPRVIGVRTINTSSNTATLEMEVRPERCCMHQRSRALLRSITRPRSSNFNMHATAWGAFKYMVKWAGDPKFVVEVGRAMMPLTVTLSKIRFSGKLRAELSPLMPKIPCFGALAVTFMERPFIDFTFKVGSLDVMSIGSGDMSVAAAMSAIMKSLTHPLTHLFLPQXXXXXXXXXXXXXXXXXXXXXXXXXXTIQSMMLYPKKLVIPMVDGVDVGPLENPSPKGVLQLHIIGANKLKKADIVGK 519
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A4D9D1J8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1J8_9STRA) HSP 1 Score: 208 bits (529), Expect = 4.170e-58 Identity = 96/227 (42.29%), Postives = 153/227 (67.40%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIR-NVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADF 678
LPAW+ DS+V R W+ +L+K+W SG TE + T +QP+LD+ RP IN L K LGT+ P V G+R +ET + +D+ + +AGN + V+ G K +PL++ L+++ F G++R+EL PL+P P FGAI TFME+P++DF+F + L+VM++G ++V +V + I+ NV+ G +++P ++VIP+++D DL L NP P G++ ++V+ A NLR AD
Sbjct: 292 LPAWFYDSDVERSAWMTAVLQKMWAAVSGMTEKIVMTYVQPVLDTYRPSIINHLEIVKCRLGTLAPTVTGVRFVETPEEVVRLDVHISYAGNPDIVLAVGYKGLPLILELSEVQFRGKIRIELNPLMPDIPGFGAITATFMEEPYLDFSFKVASLDVMAVGAPAMNVADIVTNIIKENVLKGFLLYPAQLVIPMIEDVDLERLRNPAPIGILSVSVLSARNLRIADI 518
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A482SDK6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDK6_9ARCH) HSP 1 Score: 159 bits (402), Expect = 1.390e-41 Identity = 79/225 (35.11%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVP-LLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAA 672
+P+W +DSE RV+W N L+ +WP + A E + +QPILD +P + L + SLG+I PK++GIR + ++ +D++LR+ G++ ++ G +P L+V L +I S +RVEL L+P PCF A+ +T M+KPF+DF+ L L+VM++G G+ ++ +V TI N + ++FP ++++ + D D A P + + V A +LR+A
Sbjct: 104 MPSWLSDSEFQRVEWFNSTLQTLWPQITLAVEKLVAEEVQPILDRSKPAMLTTLKLSRCSLGSIAPKIMGIRFIHAGESSVRLDVELRFTGDSVVSLKVGTIALPALVVELAEINVSAIVRVELLDLIPRMPCFTALSITCMKKPFVDFSLKLAGLDVMNLGAGEYNIMSLVRSTINNALASTLIFPKRIIVKMDKDSDA-NYAETQPVATLVVKVEKAQDLRSA 327
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A812VGV3_SYMMI (SYT3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VGV3_SYMMI) HSP 1 Score: 141 bits (356), Expect = 3.350e-39 Identity = 63/130 (48.46%), Postives = 94/130 (72.31%), Query Frame = 1
Query: 289 IEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADF 678
+E G K PL + L+ + FS +RVEL PL+P FPCFGAI + FM+KPF+DF+F +G L+VM++GP D +V +V + IR++++G+MV+P K+V+P++ D D+ L P P G++ LT+VGA LR AD
Sbjct: 3 LEVGRKSFPLTLELSDVRFSSIVRVELTPLMPQFPCFGAITICFMKKPFMDFSFKVGSLDVMNLGPADYNVASVVNNIIRSIVDGVMVYPKKLVVPMVSDVDMKKLTTPAPVGLLVLTIVGAKKLRVADM 132
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0A1Y1HWN3_KLENI (Calcium-dependent lipid-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWN3_KLENI) HSP 1 Score: 146 bits (368), Expect = 3.350e-37 Identity = 74/231 (32.03%), Postives = 131/231 (56.71%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIE-AGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLD-DQDLLALANPTPSGVVELTVVGADNLRAADFGGK 687
+P W E+ RV WLNK L++IWP + A + K ++PIL +PP ++ F K++LGTI P++ G++ +ET + + ++++D++W GN ++ + +PL V + + F G R+ PLV FPCFGA+ + KP +DF + IG + +V + +R + +++P+++V+P+L+ D L L P+G +++ +V A NL+ DF GK
Sbjct: 61 IPQWVQFPEMERVHWLNKELREIWPYVNKAASAIIKEQVEPILKQYKPPVFLSIKFNKLTLGTIAPQIAGVKVVETDEEEIILEVDVKWGGNPSIILGMTTIVGLPLQVQVKDVQFFGLFRLRFRPLVGQFPCFGALTIALRNKPSMDFRLKI-------IGGELPGIHGIVDNLLRTAVVDSLLWPSRIVVPILEGDYKDLELR---PTGTLDVKLVEARNLKNTDFIGK 281
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: UPI0010389965 (synaptotagmin-3-like isoform X2 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI0010389965) HSP 1 Score: 143 bits (360), Expect = 2.620e-36 Identity = 85/229 (37.12%), Postives = 125/229 (54.59%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDS-CRPPKINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADFGG 684
+P W + RVDWLNK L WP A + ++ QPI +I A+ F K+SLGT+PP V GI+ LET + VM+ ++WAGN E V+ V + + V L + RV L PLVP FPCF IV++ MEKP +DF ++ ++MSI PG + + V +TI+ + L ++P + IP+LD+ ++A P G++ + VV A L D G
Sbjct: 59 IPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFSEYIGKYQIKAIEFDKLSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAAPRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSI-PG---LYRFVQETIKKQVANLYLWPQTLEIPILDES---SVAIKKPVGILHVNVVRAQKLLKMDLLG 280
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Match: A0JJW9_PHYPA (NTMC2Type1.1 protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0JJW9_PHYPA) HSP 1 Score: 143 bits (360), Expect = 3.750e-36 Identity = 79/230 (34.35%), Postives = 128/230 (55.65%), Query Frame = 1
Query: 1 LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPP-KINALGFRKVSLGTIPPKVVGIRTLETKDNKAVMDIDLRWAGNAEFVIEAGVKPVPLLVTLNKICFSGRLRVELAPLVPMFPCFGAIVLTFMEKPFIDFNFSLGKLEVMSIGPGDLSVGKMVCDTIRNVINGLMVFPTKMVIPLLDDQDLLALANPTPSGVVELTVVGADNLRAADFGGK 687
+P W + + RVDWLN+ LK +WP A M + QP +D P K++A+ F ++LG++PP VG++ ETK+ + +++ ++AGN ++ + V L + S RV L PL+P+FPCF I+++ M KP +DF L ++M+I PG + + V D I + + + ++P KM IP+ DD A+ P G++E+T+V A NL D GK
Sbjct: 59 IPLWVKNPDYERVDWLNRFLKDMWPYLDKAICKMIREQAQPHIDLYGPKFKLDAIEFESLTLGSLPPTFVGMKVYETKEKEMILEPSFKFAGNPNIIVAVRAFGMKATVQLVDVQVSATARVTLKPLIPVFPCFSKIIVSLMSKPQVDFGLKLLGGDIMAI-PG---LYRYVQDNISSQVAKMYMWPKKMDIPVNDDPS----ASKKPVGIIEVTIVKATNLVRKDTFGK 280 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81809.15849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81809.15849.1 >prot_H-elongata_contig81809.15849.1 ID=prot_H-elongata_contig81809.15849.1|Name=mRNA_H-elongata_contig81809.15849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp LPAWYTDSEVNRVDWLNKILKKIWPTASGATEGMFKTTIQPILDSCRPPKback to top mRNA from alignment at H-elongata_contig81809:11..2391- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81809.15849.1 ID=mRNA_H-elongata_contig81809.15849.1|Name=mRNA_H-elongata_contig81809.15849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-elongata_contig81809:11..2391- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81809:11..2391- >mRNA_H-elongata_contig81809.15849.1 ID=mRNA_H-elongata_contig81809.15849.1|Name=mRNA_H-elongata_contig81809.15849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig81809:11..2391- (Himanthalia elongata Himel1 dioecious)back to top |