mRNA_H-elongata_contig81803.15848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81803.15848.1
Unique NamemRNA_H-elongata_contig81803.15848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: D7G191_ECTSI (Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G191_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.230e-24
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   28 ALGSWRPSLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            +L  W+P  L V  FALLLR MVSLWPYSGQG+ PMYGDYEAQRHWMEIT ALPLHQWY
Sbjct:   10 SLTKWQPGPLVVVWFALLLRCMVSLWPYSGQGERPMYGDYEAQRHWMEITNALPLHQWY 68
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A2P6NIR8_9EUKA (Dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIR8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 3.790e-17
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   34 GSWRPSLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            G+W   LL +   ++L+RY +SLWPYSG G+ PM+GDYEAQRHWMEIT ++PL +WY
Sbjct:    6 GTW---LLLILSASMLIRYAISLWPYSGAGKPPMFGDYEAQRHWMEITNSIPLSEWY 59
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: B3S4W0_TRIAD (Alpha-1,3-glucosyltransferase n=2 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S4W0_TRIAD)

HSP 1 Score: 83.2 bits (204), Expect = 4.870e-17
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   10 SIPHNFALGSWRPSLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            S PH F L +     +  T  ALL+R+ +SL PYSG+G+ PMYGDYEAQRHWME+TT LP+ QWY
Sbjct:    6 SNPHGFILDN-----IIATLIALLIRWCISLNPYSGKGKPPMYGDYEAQRHWMELTTNLPVKQWY 65
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A8J4Q0Z9_9MYCE (Alpha-1,3-glucosyltransferase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0Z9_9MYCE)

HSP 1 Score: 82.8 bits (203), Expect = 6.680e-17
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   55 LFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            L + C ++L RY++S+ PYSG G+ PM+GDYEAQRHWMEITT  P+HQWY
Sbjct:   17 LTIVCVSILARYLISIHPYSGMGKPPMFGDYEAQRHWMEITTKTPIHQWY 66
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: UPI001F108F38 (probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F108F38)

HSP 1 Score: 81.6 bits (200), Expect = 1.720e-16
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   58 FVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWYT 207
            F    ALL+RY+VSLWPYSG G  PM+GDYEAQRHWMEIT  +P+  WYT
Sbjct:    7 FYILIALLIRYLVSLWPYSGHGIAPMFGDYEAQRHWMEITVNIPVKDWYT 56
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: L8HER6_ACACA (Alpha-1,3-glucosyltransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HER6_ACACA)

HSP 1 Score: 81.3 bits (199), Expect = 2.430e-16
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    7 DSIPHNFAL-GSWRP----SLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            D + H  AL G  +P    +LL   CF +L+RY+VSL P+SG+G+ PMYGDYEAQRHWME+T  LP+  WY
Sbjct:  102 DDVGHLEALYGFMQPRRGVTLLATLCFLVLVRYLVSLHPHSGEGKPPMYGDYEAQRHWMEVTINLPVTDWY 172
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A2R5LPK4_9ACAR (Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LPK4_9ACAR)

HSP 1 Score: 77.4 bits (189), Expect = 2.700e-16
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   73 ALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            ALLLR+  SL+PYSG G+ PM+GDYEAQRHWMEIT  LP+H+WY
Sbjct:   18 ALLLRWGTSLYPYSGAGKQPMFGDYEAQRHWMEITANLPVHEWY 61
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BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A2U1PDU9_ARTAN (Alpha-1,3-glucosyltransferase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PDU9_ARTAN)

HSP 1 Score: 79.3 bits (194), Expect = 3.880e-16
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   61 VTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            V+ FA+L+R +VSL PYSG G  P YGD+EAQRHWMEITT+LP+H+WY
Sbjct:   28 VSLFAILVRLVVSLHPYSGPGDPPKYGDFEAQRHWMEITTSLPVHEWY 75
[Close]
BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A4P9Y0K8_9FUNG (Alpha-1,3-glucosyltransferase n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0K8_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 1.570e-15
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   55 LFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            L V  F+LLLR+   LWPYSG G  PMYGDYEAQRHWME+T  LP+ QWY
Sbjct:   62 LVVALFSLLLRWTTGLWPYSGAGIPPMYGDYEAQRHWMELTWHLPMTQWY 111
[Close]
BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Match: A0A1S2Z7Z3_CICAR (Alpha-1,3-glucosyltransferase n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Z7Z3_CICAR)

HSP 1 Score: 78.6 bits (192), Expect = 2.120e-15
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   34 GSWRPSLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYEAQRHWMEITTALPLHQWY 204
            G+   +   +T FALL+R+MVSL+PYSG G  P +GD+EAQRHWMEIT  +P+ +WY
Sbjct:   27 GTTTTTFTTITLFALLIRFMVSLYPYSGSGNPPKFGDFEAQRHWMEITINVPIREWY 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81803.15848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G191_ECTSI1.230e-2477.97Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus T... [more]
A0A2P6NIR8_9EUKA3.790e-1759.65Dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1... [more]
B3S4W0_TRIAD4.870e-1758.46Alpha-1,3-glucosyltransferase n=2 Tax=Trichoplax a... [more]
A0A8J4Q0Z9_9MYCE6.680e-1764.00Alpha-1,3-glucosyltransferase n=1 Tax=Polysphondyl... [more]
UPI001F108F381.720e-1668.00probable dolichyl pyrophosphate Man9GlcNAc2 alpha-... [more]
L8HER6_ACACA2.430e-1654.93Alpha-1,3-glucosyltransferase n=1 Tax=Acanthamoeba... [more]
A0A2R5LPK4_9ACAR2.700e-1672.73Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=O... [more]
A0A2U1PDU9_ARTAN3.880e-1668.75Alpha-1,3-glucosyltransferase n=1 Tax=Artemisia an... [more]
A0A4P9Y0K8_9FUNG1.570e-1568.00Alpha-1,3-glucosyltransferase n=1 Tax=Piptocephali... [more]
A0A1S2Z7Z3_CICAR2.120e-1556.14Alpha-1,3-glucosyltransferase n=1 Tax=Cicer arieti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81803contigH-elongata_contig81803:2327..2536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog2880.D7G191
Preferred nameALG6
KEGG koko:K03848
KEGG ReactionR06262
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004583,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006091,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009060,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0036211,GO:0040003,GO:0042175,GO:0042281,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046527,GO:0048856,GO:0055114,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
EggNOG OGsKOG2575@1,KOG2575@2759
EC2.4.1.267
COG Functional cat.M
CAZyGT57
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.9958897-CDS-H-elongata_contig81803:2326..25361622931225.9958897-CDS-H-elongata_contig81803:2326..2536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81803 2327..2536 -
1691679749.6500793-CDS-H-elongata_contig81803:2326..25361691679749.6500793-CDS-H-elongata_contig81803:2326..2536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81803 2327..2536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81803.15848.1prot_H-elongata_contig81803.15848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81803 2327..2536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81803.15848.1

>prot_H-elongata_contig81803.15848.1 ID=prot_H-elongata_contig81803.15848.1|Name=mRNA_H-elongata_contig81803.15848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MCDSIPHNFALGSWRPSLLFVTCFALLLRYMVSLWPYSGQGQHPMYGDYE
AQRHWMEITTALPLHQWYT*
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mRNA from alignment at H-elongata_contig81803:2327..2536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81803.15848.1 ID=mRNA_H-elongata_contig81803.15848.1|Name=mRNA_H-elongata_contig81803.15848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig81803:2327..2536- (Himanthalia elongata Himel1 dioecious)
ATGTGTGATTCGATCCCTCACAACTTTGCGCTAGGTAGTTGGCGACCAAG
TCTCCTTTTCGTGACATGCTTCGCTCTTCTACTGCGTTATATGGTATCCT
TGTGGCCATACTCCGGACAGGGACAACATCCCATGTACGGAGACTATGAA
GCTCAGAGGCATTGGATGGAGATCACCACCGCGTTACCGCTACATCAATG
GTACACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81803:2327..2536-

>mRNA_H-elongata_contig81803.15848.1 ID=mRNA_H-elongata_contig81803.15848.1|Name=mRNA_H-elongata_contig81803.15848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig81803:2327..2536- (Himanthalia elongata Himel1 dioecious)
ATGTGTGATTCGATCCCTCACAACTTTGCGCTAGGTAGTTGGCGACCAAG
TCTCCTTTTCGTGACATGCTTCGCTCTTCTACTGCGTTATATGGTATCCT
TGTGGCCATACTCCGGACAGGGACAACATCCCATGTACGGAGACTATGAA
GCTCAGAGGCATTGGATGGAGATCACCACCGCGTTACCGCTACATCAATG
GTACACGTGAATGTGTGATTCGATCCCTCACAACTTTGCGCTAGGTAGTT
GGCGACCAAGTCTCCTTTTCGTGACATGCTTCGCTCTTCTACTGCGTTAT
ATGGTATCCTTGTGGCCATACTCCGGACAGGGACAACATCCCATGTACGG
AGACTATGAAGCTCAGAGGCATTGGATGGAGATCACCACCGCGTTACCGC
TACATCAATGGTACACGTGA
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