mRNA_H-elongata_contig81788.15846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81788.15846.1
Unique NamemRNA_H-elongata_contig81788.15846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81788.15846.1 vs. uniprot
Match: D7FU85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU85_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.240e-22
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QVFLGVSTICALCDIPVLQKNRSKPGHGLFDSEKPQEVELAQEEARRNKLNIDDR 165
            +VF+GV+TICA+C IPVL+ NR KPGHGLFDSEKPQ VELAQEEARR KLN+ DR
Sbjct:   20 KVFVGVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNVGDR 74
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BLAST of mRNA_H-elongata_contig81788.15846.1 vs. uniprot
Match: A0A835ZBU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.630e-11
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 QVFLGVSTICALCDIPVLQKNRSKPGHGLFDSEKPQEVELAQEEARRNKLNI 156
            Q  +G + +CA+C IP++ + ++KPGHGLFDSEKPQE+E AQ+  R+  L +
Sbjct:   16 QALVGTAIVCAICAIPMINR-KTKPGHGLFDSEKPQEIEQAQDAQRKATLGV 66
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BLAST of mRNA_H-elongata_contig81788.15846.1 vs. uniprot
Match: A0A2D4BQA2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQA2_PYTIN)

HSP 1 Score: 45.1 bits (105), Expect = 9.310e-5
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 QVFLGVSTICALCDIPVLQKNRSKPGHGLFDSEKPQEVELAQEEARRNKLNI 156
            +V  G      +C IPV +K  +K GH LF SEKPQEV  A+ E RR +LNI
Sbjct:   16 KVAFGTLVALGICAIPVSRK--TKAGHDLFSSEKPQEVYDAEIERRREQLNI 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81788.15846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU85_ECTSI1.240e-2278.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBU4_9STRA7.630e-1150.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BQA2_PYTIN9.310e-550.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81788contigH-elongata_contig81788:1382..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.6638303-CDS-H-elongata_contig81788:1381..15581622931225.6638303-CDS-H-elongata_contig81788:1381..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81788 1382..1558 +
1691679749.542883-CDS-H-elongata_contig81788:1381..15581691679749.542883-CDS-H-elongata_contig81788:1381..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81788 1382..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81788.15846.1prot_H-elongata_contig81788.15846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81788 1382..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81788.15846.1

>prot_H-elongata_contig81788.15846.1 ID=prot_H-elongata_contig81788.15846.1|Name=mRNA_H-elongata_contig81788.15846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QVFLGVSTICALCDIPVLQKNRSKPGHGLFDSEKPQEVELAQEEARRNKL
NIDDRASN*
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mRNA from alignment at H-elongata_contig81788:1382..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81788.15846.1 ID=mRNA_H-elongata_contig81788.15846.1|Name=mRNA_H-elongata_contig81788.15846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig81788:1382..1558+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTTTCTCGGAGTGAGCACTATATGTGCCCTCTGCGACATCCCCGT
CTTGCAGAAGAATCGGTCTAAGCCCGGACACGGCCTCTTCGACAGCGAAA
AGCCCCAAGAAGTAGAACTGGCACAGGAGGAAGCTCGAAGAAATAAGCTC
AACATCGACGACCGGGCCTCCAACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81788:1382..1558+

>mRNA_H-elongata_contig81788.15846.1 ID=mRNA_H-elongata_contig81788.15846.1|Name=mRNA_H-elongata_contig81788.15846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig81788:1382..1558+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTTTCTCGGAGTGAGCACTATATGTGCCCTCTGCGACATCCCCGT
CTTGCAGAAGAATCGGTCTAAGCCCGGACACGGCCTCTTCGACAGCGAAA
AGCCCCAAGAAGTAGAACTGGCACAGGAGGAAGCTCGAAGAAATAAGCTC
AACATCGACGACCGGGCCTCCAACTGACAGGTTTTTCTCGGAGTGAGCAC
TATATGTGCCCTCTGCGACATCCCCGTCTTGCAGAAGAATCGGTCTAAGC
CCGGACACGGCCTCTTCGACAGCGAAAAGCCCCAAGAAGTAGAACTGGCA
CAGGAGGAAGCTCGAAGAAATAAGCTCAACATCGACGACCGGGCCTCCAA
CTGA
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