mRNA_H-elongata_contig81784.15845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81784.15845.1
Unique NamemRNA_H-elongata_contig81784.15845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: D7G3N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N5_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 2.490e-116
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTDNGFRIYNVDPFRETFRRVFSNGG+GIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRND GLVALCADASNMVLACPG+SRGHVNVELYDLRRSTLIPAHESELAQ+
Sbjct:   24 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGISRGHVNVELYDLRRSTLIPAHESELAQL 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A6H5LNG1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNG1_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 1.170e-110
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTDNGFRIYNVDPFRETFRRVFSNGG+GIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRND GLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQ+
Sbjct:   24 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQL 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A835Z323_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z323_9STRA)

HSP 1 Score: 306 bits (784), Expect = 9.720e-101
Identity = 145/166 (87.35%), Postives = 159/166 (95.78%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTDNGFRIYNVDPFRETFRRVFS  GVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQ+RCIGELSFRSEVKAV+LRRDRVVV LA +IYVYRFSDL LLD+INTI+N++GL+ALC D+SNMVLACPG+SRGHVNVELYD R+STL+PAHES+LAQ+
Sbjct:   24 GCFACGTDNGFRIYNVDPFRETFRRVFS-AGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQNRCIGELSFRSEVKAVKLRRDRVVVALAHKIYVYRFSDLKLLDQINTIKNESGLLALCPDSSNMVLACPGISRGHVNVELYDTRKSTLVPAHESDLAQL 188
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A4D9CZG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZG2_9STRA)

HSP 1 Score: 286 bits (733), Expect = 2.420e-93
Identity = 133/166 (80.12%), Postives = 151/166 (90.96%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTDNGFRIYNVDPFRETFRR+F NGG+GIVEMLFR NL+ALVGGGRNPR+PPNKVMIWDDHQ+RC+GELSFRSEVKAV+LRRDRVVVVL  +IYVYRF DLHL D+++T+ N  GLVALC D +N VLACPG+++G V VELYD R+STLIPAHESELAQ+
Sbjct:   24 GCFACGTDNGFRIYNVDPFRETFRRIFPNGGIGIVEMLFRTNLVALVGGGRNPRFPPNKVMIWDDHQNRCVGELSFRSEVKAVKLRRDRVVVVLTTKIYVYRFVDLHLQDQMSTLPNPRGLVALCPDNNNTVLACPGINKGSVRVELYDSRKSTLIPAHESELAQM 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: W7U6T1_9STRA (Wd repeat domain phosphoinositide-interacting protein 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T1_9STRA)

HSP 1 Score: 283 bits (723), Expect = 5.200e-92
Identity = 132/166 (79.52%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTDNGFRIYNVDPFRETFRR+F NGG+GIVEMLFR NL+ALVGGGRNPR+PPNKVMIWDDHQ+RC+GELSFRSEVKAV+LRRDRVVVVL  +IYVYRF DLHL D+++T+ N  GLVAL  D +N VLACPG+++G V VELYD R+STLIPAHESELAQ+
Sbjct:   24 GCFACGTDNGFRIYNVDPFRETFRRIFPNGGIGIVEMLFRTNLVALVGGGRNPRFPPNKVMIWDDHQNRCVGELSFRSEVKAVKLRRDRVVVVLTTKIYVYRFVDLHLQDQMSTLPNPRGLVALSPDNNNTVLACPGINKGSVRVELYDSRKSTLIPAHESELAQM 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: F0Y5R4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5R4_AURAN)

HSP 1 Score: 276 bits (707), Expect = 3.870e-91
Identity = 131/162 (80.86%), Postives = 148/162 (91.36%), Query Frame = 1 
Query:   13 CGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            CGT++GFRIYNVDPF+ETFRRVFS GGVG+VEMLFRCNLLALVGGGR+PRYPPNKVMIWDDHQ+RCIGELSFRS+VKAV+LRRDRVVVVLA ++YVYRFSDL LLD+INT  N  GLVALC   SN VLACPGV+RGHV VELYD R+ST+I AHES+LA++
Sbjct:    1 CGTESGFRIYNVDPFKETFRRVFSGGGVGVVEMLFRCNLLALVGGGRSPRYPPNKVMIWDDHQNRCIGELSFRSDVKAVKLRRDRVVVVLATKVYVYRFSDLKLLDQINTQPNPRGLVALCPHPSNNVLACPGVNRGHVRVELYDARKSTIITAHESDLARL 162
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: W2LG63_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LG63_PHYPR)

HSP 1 Score: 273 bits (698), Expect = 2.250e-89
Identity = 128/166 (77.11%), Postives = 146/166 (87.95%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTD+GF+I+N DPF+ETF R FSNGG+GIVEMLFRCN+LA+VGGGRNPRYPPNKVMIWDDHQSR IGELSFRSEVKAV+LRRDRVVVVL  +IYVY FSDL L+D I TI N  GL ALC + SN VLACPGV+RG V +ELYDLR++TLI AHE+EL+Q+
Sbjct:   24 GCFACGTDSGFKIFNCDPFKETFHRDFSNGGIGIVEMLFRCNILAIVGGGRNPRYPPNKVMIWDDHQSRNIGELSFRSEVKAVKLRRDRVVVVLQNKIYVYNFSDLKLVDHIETIANPKGLCALCPNPSNTVLACPGVTRGTVRIELYDLRKTTLITAHEAELSQI 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A7S1C6E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6E2_9STRA)

HSP 1 Score: 271 bits (693), Expect = 3.860e-89
Identity = 122/163 (74.85%), Postives = 144/163 (88.34%), Query Frame = 1 
Query:    4 CFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELA 492
            CFACGTD GFRIYN DPF+ETFRR FS+GG+GIVEMLFRCN+LALVGGGRNPRYPP+KVMIWDDHQ+RCIGELSFRSEV+AV+LRRDRVVVVL  +IYVY F+DL L+D I T+ N  GL A+C  ++N VLACPG+ +GHV VELYD+R++TLIPAH+ +LA
Sbjct:   22 CFACGTDTGFRIYNCDPFKETFRRDFSSGGIGIVEMLFRCNILALVGGGRNPRYPPDKVMIWDDHQNRCIGELSFRSEVRAVKLRRDRVVVVLLNKIYVYNFADLELIDHIETVNNPLGLCAVCPSSTNTVLACPGLQKGHVRVELYDIRKTTLIPAHDGDLA 184
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A067CH88_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CH88_SAPPC)

HSP 1 Score: 273 bits (699), Expect = 5.440e-89
Identity = 129/166 (77.71%), Postives = 146/166 (87.95%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGTD GFRIYN DPF+ETFRR FS+GG+GIVEMLFRCN+LA+VGGGRNPRYPPNKVMIWDDHQSR IGELSFRSEVKAV+LRRDRVVVVL  +IYVY F+DL LLD I TI N  GLVALC  ++N VLACPGVSRG V +ELYD R++TLI AHE++L+Q+
Sbjct:   24 GCFACGTDTGFRIYNCDPFKETFRRDFSSGGIGIVEMLFRCNILAIVGGGRNPRYPPNKVMIWDDHQSRNIGELSFRSEVKAVKLRRDRVVVVLQNKIYVYNFADLKLLDHIETIANPKGLVALCPSSTNTVLACPGVSRGTVRIELYDQRKTTLITAHEADLSQM 189
[Close]
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Match: A0A7S3JWF9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWF9_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.330e-88
Identity = 126/166 (75.90%), Postives = 148/166 (89.16%), Query Frame = 1 
Query:    1 GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQV 498
            GCFACGT++GFRIYNVDPF+ETFRR F  GG+GIVEMLFRCNLLALVGGG +PRYPPNKVMIWDDHQ+RCIGELSFRSEVKAV+LRRDRVVV LA ++YVYRFSDL LLD+I+T  N  GL ALCAD ++ VLACPGV++GHV +ELYD R+ST++ AHES+L ++
Sbjct:   30 GCFACGTESGFRIYNVDPFKETFRRAFRGGGIGIVEMLFRCNLLALVGGGSSPRYPPNKVMIWDDHQNRCIGELSFRSEVKAVKLRRDRVVVALATKVYVYRFSDLKLLDQISTQVNSRGLAALCADPAHNVLACPGVNKGHVRIELYDSRKSTIVAAHESDLCRL 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81784.15845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3N5_ECTSI2.490e-11697.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNG1_9PHAE1.170e-11098.19Reverse transcriptase domain-containing protein n=... [more]
A0A835Z323_9STRA9.720e-10187.35WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A4D9CZG2_9STRA2.420e-9380.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U6T1_9STRA5.200e-9279.52Wd repeat domain phosphoinositide-interacting prot... [more]
F0Y5R4_AURAN3.870e-9180.86Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
W2LG63_PHYPR2.250e-8977.11Uncharacterized protein n=12 Tax=Phytophthora para... [more]
A0A7S1C6E2_9STRA3.860e-8974.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067CH88_SAPPC5.440e-8977.71Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A7S3JWF9_9STRA1.330e-8875.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81784contigH-elongata_contig81784:697..2777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue4.9e-90
Seed eggNOG ortholog2880.D7G3N5
Preferred nameWDR45B
KEGG koko:K08876
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009651,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010035,GO:0010150,GO:0010506,GO:0010508,GO:0016020,GO:0016043,GO:0016236,GO:0019222,GO:0019538,GO:0019898,GO:0022411,GO:0022607,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0032266,GO:0032501,GO:0032502,GO:0033036,GO:0034045,GO:0034497,GO:0034613,GO:0034645,GO:0035091,GO:0036211,GO:0042157,GO:0042158,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0061726,GO:0061919,GO:0065007,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0080025,GO:0090693,GO:0098542,GO:0098805,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901981,GO:1902936,GO:1903008,GO:1905037
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate binding
EggNOG OGsKOG2111@1,KOG2111@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-00_006630.1
Exons2
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.5577435-CDS-H-elongata_contig81784:696..10171622931225.5577435-CDS-H-elongata_contig81784:696..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81784 697..1017 -
1691679749.5236933-CDS-H-elongata_contig81784:696..10171691679749.5236933-CDS-H-elongata_contig81784:696..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81784 697..1017 -
1622931225.6062245-CDS-H-elongata_contig81784:2600..27771622931225.6062245-CDS-H-elongata_contig81784:2600..2777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81784 2601..2777 -
1691679749.5347102-CDS-H-elongata_contig81784:2600..27771691679749.5347102-CDS-H-elongata_contig81784:2600..2777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81784 2601..2777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81784.15845.1prot_H-elongata_contig81784.15845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81784 697..2777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81784.15845.1

>prot_H-elongata_contig81784.15845.1 ID=prot_H-elongata_contig81784.15845.1|Name=mRNA_H-elongata_contig81784.15845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
GCFACGTDNGFRIYNVDPFRETFRRVFSNGGVGIVEMLFRCNLLALVGGG
RNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYV
YRFSDLHLLDRINTIRNDAGLVALCADASNMVLACPGVSRGHVNVELYDL
RRSTLIPAHESELAQV
back to top

mRNA from alignment at H-elongata_contig81784:697..2777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81784.15845.1 ID=mRNA_H-elongata_contig81784.15845.1|Name=mRNA_H-elongata_contig81784.15845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2081bp|location=Sequence derived from alignment at H-elongata_contig81784:697..2777- (Himanthalia elongata Himel1 dioecious)
GGGTGCTTTGCCTGCGGTACCGATAACGGTTTCCGTATCTACAACGTGGA
CCCCTTCCGAGAGACGTTCCGAAGGGTTTTTAGCAATGGAGGCGTCGGCA
TCGTCGAGATGCTCTTCCGCTGTAACCTCCTAGCTCTCGTGGGCGGCGGC
CGGAATCCTCGCTACCCCCCTAACAAGGTGCGCGAAGGACGAGACAGCAG
CCAGCATACCGGACGCTTTTCCAAGTCATTTCGGAGTTGCTTGACAAGCG
CCTCGTTTCGTTTTGTGCTTTTCTTAAGGAGTGAAGGATTTTGATTGGTC
GATATTTTCCTGGGGTTCTTCTTTGGAAGTAAAGTTGTCGATTGACAAGA
GTTGGACCCCTTGACAGACGCGTCAAGGATACGTCTCGATACTAAAACTA
ATATATCTTCAAAAAGGACATTTTGACGCACTGTCAAGAACCTGTCAACC
GACAACTTTGTTTGGAAGTGGAGGGGCGGGGGGCGGGGGGGCGCTTCGAA
AAATTTGATGGACACTACGATCGACACGTGGACCTAAGGAATCAACCTCC
ATTTTCCCCCCCCGCTTCGTTAACGCCTTCTAGGGATTTTTTTTTCGCAC
GCGGTTACACCACTGCAGTATTACTAGACGAGACTGCTCGGGCGACGACT
TTACCCTCTAGACTAAATTAAATGTATGTGTCCTCCCATTCGGAGTACTC
TGTTGGCTGTACTGACACCTCGGAGTGCTATGTCCAGAGATGGAGCAGCG
GCGGGTACAAGCAGGAGAGAGCAGGAGAGAGAGAGAGCTGCGGCGATACT
GTATGTAGGCAATGCGAGTAGAATAGGCCAAATCAACGTCTTCAGGGATA
GCTCGTGATCGGGGAAGGGGAGAGGTATTTTCAAACCGGTGCGGTGCCCC
CTTAAGTGTCATGCCGTTTTGCGCGGTCTGATGATACAAATTGATAAAAA
CGATCAAGAAGGGAATACCATACACCCTCGGTTTCTGAAAACACTACGAT
ATAAATAATAGTCGAGGGAGGGGGGGGGTGAAGGGAAGAGCTCGGGTGTT
ACCGCACCCCCAGTGCTTATCGTGCGTGTGCGATCTACACCACTTTTGGG
GGGGCCAACGCATCCCACCCCCTCCCCCACGCACCCCCCCCCCCTATTAG
TCAACGCGTACGGTGCGTGAGCCATGGGTTATTGTTATTACTAATGCCAT
TAAAAAGTTGCTTGGAGGAAATCGATGAGAGGCCCAAAGTTCTTACGTAC
ACACACACATCTAGCGAACCAGTCTGTCCCGGTTATTTATTTTTCTTTTA
ACAAAACATGAACTCATTCCAACCTTCCGAACATCCACGCCTTCTTAGCA
TCCTGAAGTGCAGTCCAGGGGACCAACTATCGTCAGGTTTGAATGTGTAC
ATTATTTTTTTTTAATGAATTTGTGCATTATCATTTAGTCCCCCTTTCTG
CTGATAGTGCTATTCAACGTTCAACGAGCTGGGTTCTTAGTAATAGGGGA
TGATGCTCTTGCACGTTATCGCCTTCGATGCCGTACCGATGCCGTAGGAC
TGTGCTACCAATAAAAATTAATTTCTCTCCATAACAAATCACGATATCCA
TACGTGCCAAATAATCGAACTTATTACAACAAATTATTGAGCCTACACCA
CAAATCGTTGCTTGCACCTACATCTCCTGCTTATCACGCCGTCTCTTACC
AAACATATCCCCTCCATTGCCTGCACGCCACCTTACATGCTGAAACCCCG
CCTGTCCCAGGTGATGATCTGGGACGATCACCAGAGTCGGTGCATCGGCG
AGCTCAGCTTCCGCAGCGAGGTCAAGGCCGTCCGCCTTCGGCGAGATCGC
GTTGTCGTAGTATTGGCGCAGCGTATCTACGTCTACCGATTCTCCGACCT
TCATCTGCTGGACCGAATCAACACCATCCGGAACGACGCCGGCCTCGTGG
CCCTCTGCGCCGACGCCTCTAATATGGTGCTGGCGTGTCCGGGAGTCAGT
CGCGGCCACGTGAACGTGGAGCTGTACGACCTGAGGAGGTCCACTTTGAT
CCCCGCGCACGAGTCGGAGCTCGCCCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81784:697..2777-

>mRNA_H-elongata_contig81784.15845.1 ID=mRNA_H-elongata_contig81784.15845.1|Name=mRNA_H-elongata_contig81784.15845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig81784:697..2777- (Himanthalia elongata Himel1 dioecious)
GGGTGCTTTGCCTGCGGTACCGATAACGGTTTCCGTATCTACAACGTGGA
CCCCTTCCGAGAGACGTTCCGAAGGGTTTTTAGCAATGGAGGCGTCGGCA
TCGTCGAGATGCTCTTCCGCTGTAACCTCCTAGCTCTCGTGGGCGGCGGC
CGGAATCCTCGCTACCCCCCTAACAAGGGGTGCTTTGCCTGCGGTACCGA
TAACGGTTTCCGTATCTACAACGTGGACCCCTTCCGAGAGACGTTCCGAA
GGGTTTTTAGCAATGGAGGCGTCGGCATCGTCGAGATGCTCTTCCGCTGT
AACCTCCTAGCTCTCGTGGGCGGCGGCCGGAATCCTCGCTACCCCCCTAA
CAAGGTGATGATCTGGGACGATCACCAGAGTCGGTGCATCGGCGAGCTCA
GCTTCCGCAGCGAGGTCAAGGCCGTCCGCCTTCGGCGAGATCGCGTTGTC
GTAGTATTGGCGCAGCGTATCTACGTCTACCGATTCTCCGACCTTCATCT
GCTGGACCGAATCAACACCATCCGGAACGACGCCGGCCTCGTGGCCCTCT
GCGCCGACGCCTCTAATATGGTGCTGGCGTGTCCGGGAGTCAGTCGCGGC
CACGTGAACGTGGAGCTGTACGACCTGAGGAGGTCCACTTTGATCCCCGC
GCACGAGTCGGAGCTCGCCCAGGTGGTGATGATCTGGGACGATCACCAGA
GTCGGTGCATCGGCGAGCTCAGCTTCCGCAGCGAGGTCAAGGCCGTCCGC
CTTCGGCGAGATCGCGTTGTCGTAGTATTGGCGCAGCGTATCTACGTCTA
CCGATTCTCCGACCTTCATCTGCTGGACCGAATCAACACCATCCGGAACG
ACGCCGGCCTCGTGGCCCTCTGCGCCGACGCCTCTAATATGGTGCTGGCG
TGTCCGGGAGTCAGTCGCGGCCACGTGAACGTGGAGCTGTACGACCTGAG
GAGGTCCACTTTGATCCCCGCGCACGAGTCGGAGCTCGCCCAGGTG
back to top