mRNA_H-elongata_contig81737.15841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81737.15841.1
Unique NamemRNA_H-elongata_contig81737.15841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: D7FU12_ECTSI (GST N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU12_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.670e-22
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            PFQLSLGF TTL+AGLGMLPR LKGSKY+PAKMP+KPLELWGYE+SPFTK
Sbjct:  208 PFQLSLGFGTTLSAGLGMLPRGLKGSKYTPAKMPKKPLELWGYEASPFTK 257
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BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A6A5MS47_LUPAL (Putative thioredoxin-like protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A5MS47_LUPAL)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            PF LSLGF TTLTAG GML R+ KGSKY+PAK+P KPL+LW YE SPF K
Sbjct:  218 PFTLSLGFLTTLTAGFGMLARSGKGSKYTPAKLPPKPLKLWAYEGSPFCK 267
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BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A445I5B8_GLYSO (GST N-terminal domain-containing protein (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445I5B8_GLYSO)

HSP 1 Score: 73.9 bits (180), Expect = 7.390e-14
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLGF TTLTAGLGML R  KG+ Y+PAK P KPL+LW YE SPF K
Sbjct:  200 PLSLSLGFLTTLTAGLGMLSRISKGTTYTPAKFPPKPLKLWAYEGSPFCK 249
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BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A445IJB1_GLYSO (GST N-terminal domain-containing protein n=8 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A445IJB1_GLYSO)

HSP 1 Score: 73.9 bits (180), Expect = 9.490e-14
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLGF TTLTAGLGML R  KG+ Y+PAK P KPL+LW YE SPF K
Sbjct:  242 PLSLSLGFLTTLTAGLGMLSRISKGTTYTPAKFPPKPLKLWAYEGSPFCK 291
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: UPI000D1CFB76 (uncharacterized protein LOC9631568 isoform X2 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CFB76)

HSP 1 Score: 72.0 bits (175), Expect = 2.350e-13
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            PF LSLGF TTLTAGL ML RA KGS+Y PA+ P KPL++W YE SPF K
Sbjct:  149 PFMLSLGFFTTLTAGLAMLGRAGKGSQYVPARKPDKPLKIWAYELSPFCK 198
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A3Q0FG17_VIGRR (uncharacterized protein LOC106772620 isoform X2 n=2 Tax=Vigna TaxID=3913 RepID=A0A3Q0FG17_VIGRR)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-13
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLGF TTLTAGLGML R  KG+ Y+PAK P KPL+LW YE SPF K
Sbjct:  206 PLSLSLGFLTTLTAGLGMLSRIGKGTTYTPAKFPPKPLKLWAYEVSPFCK 255
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A1S3V8F0_VIGRR (uncharacterized protein LOC106772620 isoform X1 n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3V8F0_VIGRR)

HSP 1 Score: 72.4 bits (176), Expect = 3.210e-13
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLGF TTLTAGLGML R  KG+ Y+PAK P KPL+LW YE SPF K
Sbjct:  227 PLSLSLGFLTTLTAGLGMLSRIGKGTTYTPAKFPPKPLKLWAYEVSPFCK 276
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A6P4CIV9_ARADU (uncharacterized protein LOC107476200 n=4 Tax=Arachis TaxID=3817 RepID=A0A6P4CIV9_ARADU)

HSP 1 Score: 72.0 bits (175), Expect = 3.370e-13
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLG  TTLTAGLG+L RA KGS Y+PAK+P KPL LW YE SPF K
Sbjct:  217 PITLSLGILTTLTAGLGLLARAGKGSTYTPAKLPPKPLVLWAYEGSPFCK 266
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: D8SJW2_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SJW2_SELML)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-13
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            PF LSLGF TTLTAGL ML RA KGS+Y PA+ P KPL++W YE SPF K
Sbjct:  206 PFMLSLGFFTTLTAGLAMLGRAGKGSQYVPARKPDKPLKIWAYELSPFCK 255
[Close]
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Match: A0A371EUK2_MUCPR (GST N-terminal domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371EUK2_MUCPR)

HSP 1 Score: 71.6 bits (174), Expect = 6.780e-13
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:    2 PFQLSLGFATTLTAGLGMLPRALKGSKYSPAKMPRKPLELWGYESSPFTK 151
            P  LSLGF TTLTAGL ML R  KGS YSPAK P KP++LW YE SPF K
Sbjct:  256 PLPLSLGFLTTLTAGLAMLNRIGKGSTYSPAKFPPKPIKLWAYEGSPFCK 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81737.15841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU12_ECTSI3.670e-2288.00GST N-terminal domain-containing protein n=2 Tax=E... [more]
A0A6A5MS47_LUPAL1.690e-1574.00Putative thioredoxin-like protein n=2 Tax=Lupinus ... [more]
A0A445I5B8_GLYSO7.390e-1470.00GST N-terminal domain-containing protein (Fragment... [more]
A0A445IJB1_GLYSO9.490e-1470.00GST N-terminal domain-containing protein n=8 Tax=G... [more]
UPI000D1CFB762.350e-1370.00uncharacterized protein LOC9631568 isoform X2 n=1 ... [more]
A0A3Q0FG17_VIGRR2.840e-1370.00uncharacterized protein LOC106772620 isoform X2 n=... [more]
A0A1S3V8F0_VIGRR3.210e-1370.00uncharacterized protein LOC106772620 isoform X1 n=... [more]
A0A6P4CIV9_ARADU3.370e-1370.00uncharacterized protein LOC107476200 n=4 Tax=Arach... [more]
D8SJW2_SELML3.900e-1370.00Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A371EUK2_MUCPR6.780e-1370.00GST N-terminal domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81737contigH-elongata_contig81737:1727..2537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size239
Cds size237
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81737.15841.1prot_H-elongata_contig81737.15841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81737 1727..2537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.078917-CDS-H-elongata_contig81737:1726..18171622931225.078917-CDS-H-elongata_contig81737:1726..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 1727..1817 +
1691679749.3324234-CDS-H-elongata_contig81737:1726..18171691679749.3324234-CDS-H-elongata_contig81737:1726..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 1727..1817 +
1622931225.0931802-CDS-H-elongata_contig81737:2147..22211622931225.0931802-CDS-H-elongata_contig81737:2147..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 2148..2221 +
1691679749.3553965-CDS-H-elongata_contig81737:2147..22211691679749.3553965-CDS-H-elongata_contig81737:2147..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 2148..2221 +
1622931225.1076977-CDS-H-elongata_contig81737:2465..25371622931225.1076977-CDS-H-elongata_contig81737:2465..2537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 2466..2537 +
1691679749.3675485-CDS-H-elongata_contig81737:2465..25371691679749.3675485-CDS-H-elongata_contig81737:2465..2537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 2466..2537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81737.15841.1

>prot_H-elongata_contig81737.15841.1 ID=prot_H-elongata_contig81737.15841.1|Name=mRNA_H-elongata_contig81737.15841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ALPAVARVRDHPHGRPRHAAASSEGIEILSGEDAEETLGAMGVRIFAVHQ
GELTAVVREKLCELEIPHKFVASARGSPK
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mRNA from alignment at H-elongata_contig81737:1727..2537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81737.15841.1 ID=mRNA_H-elongata_contig81737.15841.1|Name=mRNA_H-elongata_contig81737.15841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=811bp|location=Sequence derived from alignment at H-elongata_contig81737:1727..2537+ (Himanthalia elongata Himel1 dioecious)
GCCCTTCCAGCTGTCGCTCGGGTTCGCGACCACCCTCACGGCAGGCCTCG
GCATGCTGCCGCGAGCTCTGAAGGGATCGAAATACTCTCCGGTGCGGATG
GGTTTGGACATTAAGATTGGCTTTACTCCCCTATTTGTGCGTGCGTCTGG
CTCTAATTGATCTTGCGCAGCTTGCTTTGTCACCGGGTGTCCACCCTTAG
ACGTGAGATCGATTTACCGAATCGATCCGAGGGATGTGTGTGACTGACTA
CAGACGGATGGAAGATGGGGAGGGGTTGACGAATCGCCGAGCTTCCGCCA
CATCCAGTGCTCACTAGGATCCCCGACGAGTAACTCCACTCCACTCCACT
CCACTCCACTCCTCCTAAGTGTCTAGCGTGTGTGAACCTCCCTCGCCCCC
ACCGACATCGGAATGGAGCAGGCGAAGATGCCGAGGAAACCCTTGGAGCT
ATGGGGGTACGAATCTTCGCCGTTCACCAAGGCGAGCTGACTGCTGTTCG
CCTCGACAGACGGTACATGGCCCTAGAATTGCCATGGAGGGCCAACGGTC
CGTTGCCACTCGTACACGAGAGAGCTAGAAGTGTCATACGGAGCGAGATT
TCAGTGTATCCCCGAAGATAACGACGCGTCGAGGCGCGGTCTCAGGCCCC
TGTTAAGCAGAGAGACACGAACACGCTCTTGAAAACGCCGACTTACATCG
GATGCCACGTAATTTGTCACCGATATGAAACGGCGTCAGGTTGTACGCGA
AAAGTTGTGTGAGCTAGAGATCCCGCACAAGTTTGTCGCCTCCGCCAGGG
GCAGCCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig81737:1727..2537+

>mRNA_H-elongata_contig81737.15841.1 ID=mRNA_H-elongata_contig81737.15841.1|Name=mRNA_H-elongata_contig81737.15841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig81737:1727..2537+ (Himanthalia elongata Himel1 dioecious)
GCCCTTCCAGCTGTCGCTCGGGTTCGCGACCACCCTCACGGCAGGCCTCG
GCATGCTGCCGCGAGCTCTGAAGGGATCGAAATACTCTCCGGCCCTTCCA
GCTGTCGCTCGGGTTCGCGACCACCCTCACGGCAGGCCTCGGCATGCTGC
CGCGAGCTCTGAAGGGATCGAAATACTCTCCGGCGAAGATGCCGAGGAAA
CCCTTGGAGCTATGGGGGTACGAATCTTCGCCGTTCACCAAGGCGAGCTG
ACTGCTGCGAAGATGCCGAGGAAACCCTTGGAGCTATGGGGGTACGAATC
TTCGCCGTTCACCAAGGCGAGCTGACTGCTGTTGTACGCGAAAAGTTGTG
TGAGCTAGAGATCCCGCACAAGTTTGTCGCCTCCGCCAGGGGCAGCCCCA
AGGTTGTACGCGAAAAGTTGTGTGAGCTAGAGATCCCGCACAAGTTTGTC
GCCTCCGCCAGGGGCAGCCCCAAG
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