mRNA_H-elongata_contig81736.15839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81736.15839.1
Unique NamemRNA_H-elongata_contig81736.15839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81736.15839.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 8.280e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 MSGGHLLERD-KQFFAWDLVTVVQLVHPELFTIEELECDIVSEGVSQGRIVRCA 159
            ++G HLLE + + FFAWDL+TV QLVHPELFT  ++ECD+V  G SQGR VR A
Sbjct:  254 LAGAHLLETETRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVRTA 307
[Close]
BLAST of mRNA_H-elongata_contig81736.15839.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.430e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 MSGGHLLE-RDKQFFAWDLVTVVQLVHPELFTIEELECDIVSEGVSQGRIVRCA 159
            ++G HLLE + + FFAWDL+TV QLVHPELFT  ++ECD+V  G SQGR VR A
Sbjct:  266 LAGAHLLETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVIGGASQGRTVRTA 319
[Close]
BLAST of mRNA_H-elongata_contig81736.15839.1 vs. uniprot
Match: A0A2H5Y478_9CHLR (Pyrimidine-specific ribonucleoside hydrolase RihA n=1 Tax=Candidatus Thermoflexus japonica TaxID=2035417 RepID=A0A2H5Y478_9CHLR)

HSP 1 Score: 49.3 bits (116), Expect = 3.190e-5
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   34 QFFAWDLVTVVQLVHPELFTIEELECDIVSEGVSQGRIVRCAGERNKSSWI 186
            ++  WD+VT V L  PELFT EE E  + +EG  QGRI+R  G R    W+
Sbjct:  242 RYCMWDVVTTVWLARPELFTFEETEIAVHTEGPGQGRIIRQPGGRRV--WV 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81736.15839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM07_ECTSI8.280e-1462.96Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A6H5JPH9_9PHAE8.430e-1462.96IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
A0A2H5Y478_9CHLR3.190e-547.06Pyrimidine-specific ribonucleoside hydrolase RihA ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81736contigH-elongata_contig81736:2493..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D8LM07
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
EggNOG free text desc.purine nucleosidase activity
EggNOG OGsCOG1957@1,KOG2938@2759
EC3.2.2.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInosine/uridine-preferring nucleoside hydrolase domain
Ec32 orthologEc-14_002390.1
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.0343554-CDS-H-elongata_contig81736:2492..26811622931225.0343554-CDS-H-elongata_contig81736:2492..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81736 2493..2681 -
1691679749.3127923-CDS-H-elongata_contig81736:2492..26811691679749.3127923-CDS-H-elongata_contig81736:2492..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81736 2493..2681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81736.15839.1prot_H-elongata_contig81736.15839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81736 2493..2681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81736.15839.1

>prot_H-elongata_contig81736.15839.1 ID=prot_H-elongata_contig81736.15839.1|Name=mRNA_H-elongata_contig81736.15839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSGGHLLERDKQFFAWDLVTVVQLVHPELFTIEELECDIVSEGVSQGRIV
RCAGERNKSSWI*
back to top

mRNA from alignment at H-elongata_contig81736:2493..2681-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81736.15839.1 ID=mRNA_H-elongata_contig81736.15839.1|Name=mRNA_H-elongata_contig81736.15839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig81736:2493..2681- (Himanthalia elongata Himel1 dioecious)
ATGTCCGGAGGACACTTGCTGGAAAGGGACAAGCAGTTTTTTGCGTGGGA
TCTCGTGACCGTGGTGCAGCTAGTGCACCCCGAGCTGTTCACCATCGAGG
AGCTGGAGTGCGATATCGTCTCCGAGGGAGTCAGCCAGGGACGCATCGTA
CGTTGTGCAGGCGAGAGAAATAAATCATCTTGGATTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81736:2493..2681-

>mRNA_H-elongata_contig81736.15839.1 ID=mRNA_H-elongata_contig81736.15839.1|Name=mRNA_H-elongata_contig81736.15839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig81736:2493..2681- (Himanthalia elongata Himel1 dioecious)
ATGTCCGGAGGACACTTGCTGGAAAGGGACAAGCAGTTTTTTGCGTGGGA
TCTCGTGACCGTGGTGCAGCTAGTGCACCCCGAGCTGTTCACCATCGAGG
AGCTGGAGTGCGATATCGTCTCCGAGGGAGTCAGCCAGGGACGCATCGTA
CGTTGTGCAGGCGAGAGAAATAAATCATCTTGGATTTGAATGTCCGGAGG
ACACTTGCTGGAAAGGGACAAGCAGTTTTTTGCGTGGGATCTCGTGACCG
TGGTGCAGCTAGTGCACCCCGAGCTGTTCACCATCGAGGAGCTGGAGTGC
GATATCGTCTCCGAGGGAGTCAGCCAGGGACGCATCGTACGTTGTGCAGG
CGAGAGAAATAAATCATCTTGGATTTGA
back to top