mRNA_H-elongata_contig81704.15836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81704.15836.1
Unique NamemRNA_H-elongata_contig81704.15836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: A0A1W6IYH0_SACJA (Carbonic anhydrase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A1W6IYH0_SACJA)

HSP 1 Score: 147 bits (372), Expect = 8.450e-42
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 SVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            S++YIF+NNR W E T++ DPD FKR A SQ PKY YIGCSDSRVPAQNMMGL  GELFVVRNVANLCVNTDHSLLAAL YAVNVLEV++++
Sbjct:   82 SMDYIFQNNRDWVEGTISEDPDTFKRLATSQQPKYLYIGCSDSRVPAQNMMGLTTGELFVVRNVANLCVNTDHSLLAALTYAVNVLEVTDII 173          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: D8LR72_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR72_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.320e-41
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 SVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            S +YIF NNR W E+ L +DPD FKR A SQ P+Y YIGCSDSRVPAQNMMGL+ GELFVVRNVANLCVNTDHSLLAALAYAVNVLEV++++
Sbjct:   87 STDYIFANNRAWVEERLAQDPDTFKRLANSQKPRYMYIGCSDSRVPAQNMMGLNTGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVTDII 178          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: A0A835ZBM8_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.950e-33
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    4 SVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            +++YIF++N++W +D L  DP+ F R   +Q+PKY YIGCSDSRVPAQNM+GL  GELFV RNVANLCVNTD+SLL+ L YAV VLEV++++
Sbjct:   19 NLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDII 110          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: H6WB75_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB75_VAULI)

HSP 1 Score: 122 bits (306), Expect = 5.290e-32
Identity = 54/93 (58.06%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    1 SSVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            S + ++FENN+KW  +++ +DP+ F R   +Q PKY YIGCSDSRVPAQNM+GL  GELFV+RNVANLC+N+D SLL+ L +++ VLEV++V+
Sbjct:   52 SPLEHLFENNKKWVRESVEKDPEVFTRLKDAQQPKYLYIGCSDSRVPAQNMLGLQAGELFVIRNVANLCINSDFSLLSVLLFSIEVLEVTDVI 144          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: A0A4D9D3S5_9STRA (Carbonic anhydrase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3S5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.040e-31
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    1 SSVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEV 276
            + +++IFENN++W E+ L  DPD FK+    Q P+Y YIGCSDSRVPAQ +MGL  GE+FV RN+ANL VNTD SLLA L YAV+VLEV ++
Sbjct:   66 AELSHIFENNKRWVENALKDDPDFFKKLKHGQKPEYLYIGCSDSRVPAQEIMGLKAGEVFVARNIANLVVNTDMSLLAVLEYAVHVLEVKDI 157          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 110 bits (275), Expect = 6.390e-28
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    4 SVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            S   +FENNRKW  +    DPD FK  AK QSPKY +IGC+DSR+PAQ ++GL  GELFV RNVANL VN D +LLA L Y+V VL+V +++
Sbjct:   38 SFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDII 129          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: UPI001FD629BB (carbonic anhydrase n=1 Tax=Hymenobacter sp. 5116S-27 TaxID=2932249 RepID=UPI001FD629BB)

HSP 1 Score: 109 bits (272), Expect = 1.280e-27
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 SSVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            SS+  I +NNRKW E+    DPD F + AK Q P+Y +IGCSDSRVPA  + G   GE+FV RN+ANL VNTD +LLA L YAV VLEV ++M
Sbjct:   11 SSMEQILQNNRKWVEEKKATDPDFFNKLAKGQQPRYLFIGCSDSRVPASAITGTGPGEMFVHRNIANLVVNTDMNLLAVLQYAVEVLEVKDIM 103          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: UPI00198FA359 (carbonic anhydrase n=1 Tax=Marivirga lumbricoides TaxID=1046115 RepID=UPI00198FA359)

HSP 1 Score: 106 bits (265), Expect = 7.780e-27
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   16 IFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            +FENNRKW  D L  DPD FK+ A  Q PKY +IGCSDSRVPA  + G D GE+FV RN+AN+ V+TD +L++ L YAV VL+V  ++
Sbjct:    8 LFENNRKWVSDKLNLDPDYFKKMANGQDPKYLFIGCSDSRVPANEITGTDPGEMFVHRNIANMVVHTDMNLMSVLQYAVQVLKVQHII 95          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: UPI0019171F79 (carbonic anhydrase n=1 Tax=Marivirga sp. S37H4 TaxID=2802615 RepID=UPI0019171F79)

HSP 1 Score: 105 bits (263), Expect = 1.590e-26
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   16 IFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            +FENNRKW  D L  DPD FK+ A+ Q PKY +IGCSDSRVPA  + G + GE+FV RN+AN+ V+TD +L++ L YAV VL+V  V+
Sbjct:    8 LFENNRKWVSDKLNLDPDYFKKMAEGQKPKYLFIGCSDSRVPANEITGTEPGEMFVHRNIANMVVHTDMNLMSVLQYAVQVLKVEHVI 95          
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Match: E4TMY1_MARTH (Carbonic anhydrase n=2 Tax=Marivirga TaxID=869806 RepID=E4TMY1_MARTH)

HSP 1 Score: 105 bits (262), Expect = 2.200e-26
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    4 SVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQNMMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM 279
            S + +FENN+KW E+ L  DP+ F+  AK Q PKY YIGCSDSR+P   M G   GELF+ RNVAN+ V+TD++L++ L YAV VL+V  V+
Sbjct:    5 SYSKLFENNKKWVEEKLNLDPEYFENHAKGQKPKYLYIGCSDSRLPVNEMTGTSAGELFIHRNVANMVVHTDNNLMSVLQYAVQVLKVEHVV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81704.15836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W6IYH0_SACJA8.450e-4277.17Carbonic anhydrase n=2 Tax=Saccharina japonica Tax... [more]
D8LR72_ECTSI2.320e-4177.17Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835ZBM8_9STRA1.950e-3363.04Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
H6WB75_VAULI5.290e-3258.06Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A4D9D3S5_9STRA5.040e-3160.87Carbonic anhydrase n=1 Tax=Nannochloropsis salina ... [more]
A0A6S9IM72_HETAK6.390e-2858.70Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
UPI001FD629BB1.280e-2758.06carbonic anhydrase n=1 Tax=Hymenobacter sp. 5116S-... [more]
UPI00198FA3597.780e-2756.82carbonic anhydrase n=1 Tax=Marivirga lumbricoides ... [more]
UPI0019171F791.590e-2656.82carbonic anhydrase n=1 Tax=Marivirga sp. S37H4 Tax... [more]
E4TMY1_MARTH2.200e-2654.35Carbonic anhydrase n=2 Tax=Marivirga TaxID=869806 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81704contigH-elongata_contig81704:1711..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D8LR72
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG0288@1,KOG1578@2759
EC4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.831848-CDS-H-elongata_contig81704:1710..18661622931224.831848-CDS-H-elongata_contig81704:1710..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81704 1711..1866 +
1691679749.240715-CDS-H-elongata_contig81704:1710..18661691679749.240715-CDS-H-elongata_contig81704:1710..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81704 1711..1866 +
1622931224.8585117-CDS-H-elongata_contig81704:2609..27321622931224.8585117-CDS-H-elongata_contig81704:2609..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81704 2610..2732 +
1691679749.2523189-CDS-H-elongata_contig81704:2609..27321691679749.2523189-CDS-H-elongata_contig81704:2609..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81704 2610..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81704.15836.1prot_H-elongata_contig81704.15836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81704 1711..2732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81704.15836.1

>prot_H-elongata_contig81704.15836.1 ID=prot_H-elongata_contig81704.15836.1|Name=mRNA_H-elongata_contig81704.15836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
SSVNYIFENNRKWKEDTLTRDPDAFKRFAKSQSPKYFYIGCSDSRVPAQN
MMGLDIGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVSEVM
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mRNA from alignment at H-elongata_contig81704:1711..2732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81704.15836.1 ID=mRNA_H-elongata_contig81704.15836.1|Name=mRNA_H-elongata_contig81704.15836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-elongata_contig81704:1711..2732+ (Himanthalia elongata Himel1 dioecious)
AGTTCGGTGAACTACATCTTCGAGAACAACCGGAAGTGGAAGGAAGATAC TCTGACGCGTGACCCTGACGCTTTCAAGCGGTTTGCCAAGTCTCAGTCGC CAAAGTACTTTTACATCGGGTGCTCGGACAGCAGGGTGCCAGCTCAGAAT ATGATGGTGAGCAACACGAGAATGGATAACGATGTGATATTCCAACGCAT GGTTGAGGTGCAGTGTAAGATTATACGGGATCAAGATCCTTTCACTGTGC ATCCCCGATCGTTCCACTTTTGCGCGTAAATCCGCTGAGAAACTGAAGGT CCTCGCGCTTTTTTGTGGCACTAAATGAATAATATACTGTACTGTATCGC GCATATATACTGTACCAATAATGGGTGTGGGAAAAGATAGAGGTGCCAAA CAAATAGTCTATGGGATAGCCCCTACAATAGGCAGCACCCGTTACTCAAG CTACCTTGAGGACTACTGGCTTAATGCCGACGAATTCTCGGGGGTAAACA CCATCGGTACGCAATTGCGGGACTTGATGAAGTCGGGATTGACGCGATTG ATGTTGACTCTAGAAATGGGTATCGCCGTCATGGAAAACGGGGGTAACAA GAGGATGCAGGAAGTAAACACCAGGCTCAGCCTGGGTGGTGAAAACGAGC GGGCTAACACAGGACGGGACGGCCGAACTCGTATCGCGAGACCAAATTAT CAGACGCAAACGGGAACAGGAAAAAAAACATTTTCGCTGTTCAGCTAATC ACGAGCAAGATTGGCAACCATATTTGGTTGATACATGCTCAGAGCCATGC GATGGGGTCAGCGTAGTGCTATGATGCTGTTGACAAGCAGATGATCCAGA GTTGTCGCACTTCTTTATATATTTCTGGCTCGGGGTCGGTTTCGTCCAGG GCCTGGACATAGGGGAACTCTTCGTGGTACGCAACGTCGCGAATCTATGC GTGAACACCGACCACAGCCTCTTGGCGGCGTTGGCGTACGCAGTCAACGT GCTGGAGGTAAGTGAAGTTATG
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Coding sequence (CDS) from alignment at H-elongata_contig81704:1711..2732+

>mRNA_H-elongata_contig81704.15836.1 ID=mRNA_H-elongata_contig81704.15836.1|Name=mRNA_H-elongata_contig81704.15836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig81704:1711..2732+ (Himanthalia elongata Himel1 dioecious)
AGTTCGGTGAACTACATCTTCGAGAACAACCGGAAGTGGAAGGAAGATAC
TCTGACGCGTGACCCTGACGCTTTCAAGCGGTTTGCCAAGTCTCAGTCGC
CAAAGTACTTTTACATCGGGTGCTCGGACAGCAGGGTGCCAGCTCAGAAT
ATGATGAGTTCGGTGAACTACATCTTCGAGAACAACCGGAAGTGGAAGGA
AGATACTCTGACGCGTGACCCTGACGCTTTCAAGCGGTTTGCCAAGTCTC
AGTCGCCAAAGTACTTTTACATCGGGTGCTCGGACAGCAGGGTGCCAGCT
CAGAATATGATGGGCCTGGACATAGGGGAACTCTTCGTGGTACGCAACGT
CGCGAATCTATGCGTGAACACCGACCACAGCCTCTTGGCGGCGTTGGCGT
ACGCAGTCAACGTGCTGGAGGTAAGTGAAGTTATGGGCCTGGACATAGGG
GAACTCTTCGTGGTACGCAACGTCGCGAATCTATGCGTGAACACCGACCA
CAGCCTCTTGGCGGCGTTGGCGTACGCAGTCAACGTGCTGGAGGTAAGTG
AAGTTATG
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