mRNA_H-elongata_contig81694.15834.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 3.870e-34 Identity = 84/207 (40.58%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FLKHKSDA A R+ + A SL + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 726 RVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYP-FLKPAYCRWQRPS-KLLPKGESCFYVG 929
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 3.900e-34 Identity = 84/207 (40.58%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FLKHKSDA A R+ + A SL + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 433 RVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYP-FLKPAYCRWQRPS-KLLPKGESCFYVG 636
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.690e-33 Identity = 78/206 (37.86%), Postives = 113/206 (54.85%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLK-IGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F DL G S+G + ++ DDFTR + FL++KSDA +A R + A+ + ++R+D+GG++ G F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 94 RVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FSKPAYCRWQRPS-KLLPKGESCFYVG 297
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.320e-33 Identity = 83/207 (40.10%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FLK KSDA +A R+ + A SL + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ +A L V K+DRLWAEAM +AC+ N S+ SPYE+W+G S P F Y R +P KL P+G +C +G
Sbjct: 632 RVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVG 835
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 134 bits (337), Expect = 8.460e-33 Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLK-IGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FL++KSDA +A R + A+ + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 247 RVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQRPT-KLLPKGESCFYVG 450
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.170e-32 Identity = 80/206 (38.83%), Postives = 114/206 (55.34%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLK-IGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FLK++SDA A R + A+ + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 314 RVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQRPT-KLLPKGESCFYVG 517
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.020e-32 Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLK-IGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FL++KSDA +A R + A+ + ++R+D+GGE+ G +F S ++L IK + TP Y+P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ PYE+WYG P F Y R +P KL P+G SC +G
Sbjct: 192 RVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPYP-FLKPAYCRWQRPT-KLLPKGESCFYVG 395
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.320e-32 Identity = 84/207 (40.58%), Postives = 113/207 (54.59%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGE-WHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FLK+KSDA A R+ + A SL + ++R+D+GGE + G F S ++L IK + TP Y+P+YNGV ER LGL+ +A L V K+DRLWAEAM AC+ N S SPYE+W+G S P F Y R +P KL PRG +C +G
Sbjct: 15 RVFVDLGGRKDVASVGGKHYPMVVKDDFTRRTWLCFLKNKSDAGRAFRSFLVGVRADGIPSL-VEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLSKTDRLWAEAMHLACEAINHTACSPNSDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPRGEACCYVG 218
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.960e-32 Identity = 81/207 (39.13%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 13 RLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R+F+DL G S+G + M+ DDFTR + FL+ KSDA +A R+ + + A SL I ++R+D+GGE+ G +F S ++L IK + TP ++P +NGV ER LGL+ + +A L V K+DRLWAEAM +AC+ N S+ SPYE+WYG P F Y + +P KL P+G SC +G
Sbjct: 477 RVFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSL-IEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYP-FLKPAYCKWQRPS-KLLPKGESCFYVG 680
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.060e-32 Identity = 81/210 (38.57%), Postives = 117/210 (55.71%), Query Frame = 1
Query: 4 RAERLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACDM*NRCTSSSLDSGTSPYELWYGRRSTFDSIPPFGTVGYLRRSKPGHKLAPRGASCIMLG 603
R R+F+DL G S+G + M+ DDFTR + FL++KSDA +A R+ + A SL + +R+D+GGE+ G +F S ++L IK + TP ++P+YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P F Y + +P KL P+G SC +G
Sbjct: 327 RIGRVFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSL-VETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYP-FLKPAYCKWQRPS-KLFPKGESCFYVG 533 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81694.15834.1 >prot_H-elongata_contig81694.15834.1 ID=prot_H-elongata_contig81694.15834.1|Name=mRNA_H-elongata_contig81694.15834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLKIGVIRTDSGGback to top mRNA from alignment at H-elongata_contig81694:707..1309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81694.15834.1 ID=mRNA_H-elongata_contig81694.15834.1|Name=mRNA_H-elongata_contig81694.15834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig81694:707..1309- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81694:707..1309- >mRNA_H-elongata_contig81694.15834.1 ID=mRNA_H-elongata_contig81694.15834.1|Name=mRNA_H-elongata_contig81694.15834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig81694:707..1309- (Himanthalia elongata Himel1 dioecious)back to top |