mRNA_H-elongata_contig81657.15833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81657.15833.1
Unique NamemRNA_H-elongata_contig81657.15833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81657.15833.1 vs. uniprot
Match: D8LLH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.150e-25
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    7 IASRRAAGQRTHDLSERATAALDSPSTGVWLQLLGEVQRRTQASEDDVIARCEAIRRRESELFRLASAKASAFFQGLARSVGHSDDQWAIP 279
            + SRRAAGQRT++L E A A L+SP T +W+Q+LGEVQRRT+    DV+ RCE++RRRE+E FR  S + + F Q LA +VG SD+QWA+P
Sbjct:  270 VNSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVSDVVLRCESVRRREAERFRHVSGQTNTFLQDLAAAVGCSDNQWAVP 360
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BLAST of mRNA_H-elongata_contig81657.15833.1 vs. uniprot
Match: A0A6H5JU58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.310e-24
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    7 IASRRAAGQRTHDLSERATAALDSPSTGVWLQLLGEVQRRTQASEDDVIARCEAIRRRESELFRLASAKASAFFQGLARSVGHSDDQWAIP 279
            + SRRAAGQRT++L E A A L+SP T +W+Q+LGEVQRRT+    DV+ RCE++RRRE+E FR  S + + F   LA +VG SD+QWA+P
Sbjct:  354 VTSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVSDVVLRCESVRRREAERFRHVSGQTNTFLHDLAAAVGCSDNQWAVP 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81657.15833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH8_ECTSI5.150e-2557.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU58_9PHAE1.310e-2456.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81657contigH-elongata_contig81657:2..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog2880.D8LLH8
Preferred nameLRRC72
KEGG koko:K18626
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1859@1,KOG1859@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.5706487-CDS-H-elongata_contig81657:1..1151622931224.5706487-CDS-H-elongata_contig81657:1..115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81657 2..115 +
1691679749.1511106-CDS-H-elongata_contig81657:1..1151691679749.1511106-CDS-H-elongata_contig81657:1..115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81657 2..115 +
1622931224.5882287-CDS-H-elongata_contig81657:306..5581622931224.5882287-CDS-H-elongata_contig81657:306..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81657 307..558 +
1691679749.1625812-CDS-H-elongata_contig81657:306..5581691679749.1625812-CDS-H-elongata_contig81657:306..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81657 307..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81657.15833.1prot_H-elongata_contig81657.15833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81657 2..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81657.15833.1

>prot_H-elongata_contig81657.15833.1 ID=prot_H-elongata_contig81657.15833.1|Name=mRNA_H-elongata_contig81657.15833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
ENIASRRAAGQRTHDLSERATAALDSPSTGVWLQLLGEVQRRTQASEDDV
IARCEAIRRRESELFRLASAKASAFFQGLARSVGHSDDQWAIPHRIERPP
AVREARIGEAAARSDTNRDKKS
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mRNA from alignment at H-elongata_contig81657:2..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81657.15833.1 ID=mRNA_H-elongata_contig81657.15833.1|Name=mRNA_H-elongata_contig81657.15833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=559bp|location=Sequence derived from alignment at H-elongata_contig81657:2..560+ (Himanthalia elongata Himel1 dioecious)
GAAAACATTGCCAGCCGACGAGCGGCAGGCCAGCGCACACACGACCTGTC
GGAAAGGGCGACTGCAGCGCTTGATTCTCCGAGCACAGGCGTGTGGTTGC
AACTGCTTGGCGAGGTGAGCATGGAAGCGGATCAAGTGGAGGACTTAAAA
GCAAGAGCCGTAAGTATCCTTCGATGGTCGGGCGGTTGGTCTGTTTTTAA
CCGCGAAGGGATGGCGCCGAAAGAATAAACATCGCCTCGCAAAACAAATT
ACGTGCCCCCTTTGATGCGCCGGGAACCGACGTGCGCGTTCGCTGGTTCG
ATCAGGTTCAGCGCCGAACCCAAGCAAGCGAGGACGATGTTATCGCGCGC
TGCGAGGCCATCCGTCGGCGCGAATCGGAACTGTTTCGTCTAGCCTCTGC
AAAAGCAAGCGCTTTTTTTCAGGGCCTCGCGAGGAGCGTGGGCCACAGTG
ACGATCAATGGGCGATCCCGCATCGAATCGAACGACCGCCCGCGGTCCGT
GAAGCTAGAATTGGGGAGGCTGCTGCGCGATCGGACACTAACCGAGACAA
AAAGTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig81657:2..560+

>mRNA_H-elongata_contig81657.15833.1 ID=mRNA_H-elongata_contig81657.15833.1|Name=mRNA_H-elongata_contig81657.15833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig81657:2..560+ (Himanthalia elongata Himel1 dioecious)
GAAAACATTGCCAGCCGACGAGCGGCAGGCCAGCGCACACACGACCTGTC
GGAAAGGGCGACTGCAGCGCTTGATTCTCCGAGCACAGGCGTGTGGTTGC
AACTGCTTGGCGAGGAAAACATTGCCAGCCGACGAGCGGCAGGCCAGCGC
ACACACGACCTGTCGGAAAGGGCGACTGCAGCGCTTGATTCTCCGAGCAC
AGGCGTGTGGTTGCAACTGCTTGGCGAGGTTCAGCGCCGAACCCAAGCAA
GCGAGGACGATGTTATCGCGCGCTGCGAGGCCATCCGTCGGCGCGAATCG
GAACTGTTTCGTCTAGCCTCTGCAAAAGCAAGCGCTTTTTTTCAGGGCCT
CGCGAGGAGCGTGGGCCACAGTGACGATCAATGGGCGATCCCGCATCGAA
TCGAACGACCGCCCGCGGTCCGTGAAGCTAGAATTGGGGAGGCTGCTGCG
CGATCGGACACTAACCGAGACAAAAAGTCGGTTCAGCGCCGAACCCAAGC
AAGCGAGGACGATGTTATCGCGCGCTGCGAGGCCATCCGTCGGCGCGAAT
CGGAACTGTTTCGTCTAGCCTCTGCAAAAGCAAGCGCTTTTTTTCAGGGC
CTCGCGAGGAGCGTGGGCCACAGTGACGATCAATGGGCGATCCCGCATCG
AATCGAACGACCGCCCGCGGTCCGTGAAGCTAGAATTGGGGAGGCTGCTG
CGCGATCGGACACTAACCGAGACAAAAAGTCG
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