mRNA_H-elongata_contig8165.15832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8165.15832.1
Unique NamemRNA_H-elongata_contig8165.15832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: D7FGS8_ECTSI (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGS8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   52 MRVVCVPTLRDNFAYLLIDESGVTAVVDPAQPEKVRK 162
            M+V+ VP L DNFAYLL D +GVTA VDPA+ +KV K
Sbjct:    1 MKVIVVPVLDDNFAYLLSDAAGVTAAVDPAEADKVLK 37
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: A0A6V1NKM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NKM9_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 5.770e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   52 MRVVCVPTLRDNFAYLLIDE-SGVTAVVDPAQPEKV 156
            M+VV VPTL DN+AYLLIDE +   A VDPA+PEKV
Sbjct:    1 MKVVPVPTLSDNYAYLLIDELTNTAAAVDPAEPEKV 36
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: A0A8J9R8P0_9CHLO (Hydroxyacylglutathione hydrolase, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R8P0_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 1.100e-5
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   52 MRVVCVPTLRDNFAYLLIDESGVTAVVDPAQPEK 153
            MR++ VP L DN++YLL+D +G+TA VDP +P K
Sbjct:    1 MRIIPVPMLSDNYSYLLVDNNGITAAVDPVEPAK 34
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: A0A139A1B0_GONPJ (Hydroxyacylglutathione hydrolase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A1B0_GONPJ)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   52 MRVVCVPTLRDNFAYLLIDE-SGVTAVVDPAQPEKV 156
            M+VV VP L DN+AYLLIDE +G +A VDP QPEK+
Sbjct:    1 MKVVPVPCLEDNYAYLLIDEKTGTSAFVDPVQPEKL 36
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: M2Y3W5_GALSU (Hydroxyacylglutathione hydrolase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y3W5_GALSU)

HSP 1 Score: 49.7 bits (117), Expect = 1.570e-5
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   37 SFQPTMRVVCVPTLRDNFAYLLIDES-GVTAVVDPAQPEKV 156
            +  P  RVV +P L DN+AYLLID +  V A +DPA+PEKV
Sbjct:    5 ALSPIARVVTIPVLSDNYAYLLIDTTKNVAAAIDPAEPEKV 45
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: A0A1V9Z2C1_9STRA (Hydroxyacylglutathione hydrolase, mitochondrial-like isoform X2 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2C1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.300e-5
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   19 HQVSVFSFQPTMRVVCVPTLRDNFAYLLIDESGVTAV-VDPAQPEKV 156
              ++ ++   ++RVV VP L DN+AYLLID++  TA  +DP +P+KV
Sbjct: 1662 ENIADYAIMTSVRVVIVPVLNDNYAYLLIDQATATAAAIDPVEPQKV 1708
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BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Match: A0A7S2GMK4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMK4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.750e-5
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   22 QVSVFSFQPTMRVVCVPTLRDNFAYLLIDES-GVTAVVDPAQPEKV 156
            Q+   S     RV+ +P L DN+AYL+ID S G  A VDPA+PEKV
Sbjct:    3 QIPCESTSHDTRVIPIPVLEDNYAYLIIDTSTGACACVDPAEPEKV 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8165.15832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FGS8_ECTSI1.160e-664.86Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A6V1NKM9_HETAK5.770e-669.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J9R8P0_9CHLO1.100e-555.88Hydroxyacylglutathione hydrolase, mitochondrial n=... [more]
A0A139A1B0_GONPJ1.530e-566.67Hydroxyacylglutathione hydrolase n=1 Tax=Gonapodya... [more]
M2Y3W5_GALSU1.570e-556.10Hydroxyacylglutathione hydrolase n=1 Tax=Galdieria... [more]
A0A1V9Z2C1_9STRA3.300e-544.68Hydroxyacylglutathione hydrolase, mitochondrial-li... [more]
A0A7S2GMK4_9STRA7.750e-552.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8165contigH-elongata_contig8165:9351..9515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.5229132-CDS-H-elongata_contig8165:9350..95151622931224.5229132-CDS-H-elongata_contig8165:9350..9515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8165 9351..9515 +
1691679749.1406233-CDS-H-elongata_contig8165:9350..95151691679749.1406233-CDS-H-elongata_contig8165:9350..9515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8165 9351..9515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8165.15832.1prot_H-elongata_contig8165.15832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8165 9351..9515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8165.15832.1

>prot_H-elongata_contig8165.15832.1 ID=prot_H-elongata_contig8165.15832.1|Name=mRNA_H-elongata_contig8165.15832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
SVKRCCHQVSVFSFQPTMRVVCVPTLRDNFAYLLIDESGVTAVVDPAQPE
KVRK*
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mRNA from alignment at H-elongata_contig8165:9351..9515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8165.15832.1 ID=mRNA_H-elongata_contig8165.15832.1|Name=mRNA_H-elongata_contig8165.15832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig8165:9351..9515+ (Himanthalia elongata Himel1 dioecious)
TCGGTGAAGCGCTGCTGTCACCAAGTCAGTGTATTTTCCTTTCAACCGAC
AATGCGCGTGGTCTGTGTGCCAACCCTTCGGGATAACTTTGCGTACTTGC
TGATCGATGAATCTGGTGTCACGGCGGTGGTGGACCCAGCGCAGCCGGAA
AAGGTACGGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig8165:9351..9515+

>mRNA_H-elongata_contig8165.15832.1 ID=mRNA_H-elongata_contig8165.15832.1|Name=mRNA_H-elongata_contig8165.15832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig8165:9351..9515+ (Himanthalia elongata Himel1 dioecious)
TCGGTGAAGCGCTGCTGTCACCAAGTCAGTGTATTTTCCTTTCAACCGAC
AATGCGCGTGGTCTGTGTGCCAACCCTTCGGGATAACTTTGCGTACTTGC
TGATCGATGAATCTGGTGTCACGGCGGTGGTGGACCCAGCGCAGCCGGAA
AAGGTACGGAAATAATCGGTGAAGCGCTGCTGTCACCAAGTCAGTGTATT
TTCCTTTCAACCGACAATGCGCGTGGTCTGTGTGCCAACCCTTCGGGATA
ACTTTGCGTACTTGCTGATCGATGAATCTGGTGTCACGGCGGTGGTGGAC
CCAGCGCAGCCGGAAAAGGTACGGAAATAA
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