mRNA_H-elongata_contig81607.15828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81607.15828.1
Unique NamemRNA_H-elongata_contig81607.15828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81607.15828.1 vs. uniprot
Match: D7G2N6_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.290e-27
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 AGFESADEVEVVAISRGRARNRPLAPNYVLAVDHGRREIVLSIRGTKAFGDAITVTHFRPEPFLDG 198
            AGF +  E+EVVA+S G++RNRP+AP YVLAVDHGRREIVLS+RGTKAFGDAIT+THFRPEPFLDG
Sbjct:   89 AGF-APGELEVVALSSGKSRNRPMAPTYVLAVDHGRREIVLSVRGTKAFGDAITITHFRPEPFLDG 153
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BLAST of mRNA_H-elongata_contig81607.15828.1 vs. uniprot
Match: A0A6H5KTE0_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.290e-27
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 AGFESADEVEVVAISRGRARNRPLAPNYVLAVDHGRREIVLSIRGTKAFGDAITVTHFRPEPFLDG 198
            AGF +  E+EVVA+S G++RNRP+AP YVLAVDHGRREIVLS+RGTKAFGDAIT+THFRPEPFLDG
Sbjct:  105 AGF-APGELEVVALSSGKSRNRPMAPTYVLAVDHGRREIVLSVRGTKAFGDAITITHFRPEPFLDG 169
[Close]
BLAST of mRNA_H-elongata_contig81607.15828.1 vs. uniprot
Match: A0A835Z4C2_9STRA (Lipase_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.940e-7
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   10 ESADEVEVVAISRGRARNRPLAPNYVLAVDHGRREIVLSIRGTKAFGDAITVTHFRPEPFLDG 198
            E  D+++V+     R+   PL P +VLAVDHG +++VLS+RGT    D  +  HF P  FL G
Sbjct:  145 EPPDQIQVLL----RSAATPLIPAHVLAVDHGHKQVVLSVRGTLGLRDLASCAHFGPTQFLSG 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81607.15828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2N6_ECTSI3.290e-2780.30Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KTE0_9PHAE3.290e-2780.30Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z4C2_9STRA1.940e-742.86Lipase_3 domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81607contigH-elongata_contig81607:1777..1977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.5e-23
Seed eggNOG ortholog2880.D7G2N6
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.0676892-CDS-H-elongata_contig81607:1776..19771622931224.0676892-CDS-H-elongata_contig81607:1776..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81607 1777..1977 +
1691679748.9789364-CDS-H-elongata_contig81607:1776..19771691679748.9789364-CDS-H-elongata_contig81607:1776..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81607 1777..1977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81607.15828.1prot_H-elongata_contig81607.15828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81607 1777..1977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81607.15828.1

>prot_H-elongata_contig81607.15828.1 ID=prot_H-elongata_contig81607.15828.1|Name=mRNA_H-elongata_contig81607.15828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
AGFESADEVEVVAISRGRARNRPLAPNYVLAVDHGRREIVLSIRGTKAFG
DAITVTHFRPEPFLDG*
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mRNA from alignment at H-elongata_contig81607:1777..1977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81607.15828.1 ID=mRNA_H-elongata_contig81607.15828.1|Name=mRNA_H-elongata_contig81607.15828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig81607:1777..1977+ (Himanthalia elongata Himel1 dioecious)
GCAGGTTTTGAATCGGCTGACGAAGTGGAAGTGGTGGCCATCTCTCGCGG
CAGGGCTAGAAACAGGCCTCTCGCACCCAACTACGTACTCGCTGTGGATC
ACGGCCGGAGGGAGATCGTCCTCTCAATCAGAGGGACGAAGGCTTTCGGT
GATGCCATTACCGTCACACACTTTCGACCAGAGCCATTCCTCGACGGGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig81607:1777..1977+

>mRNA_H-elongata_contig81607.15828.1 ID=mRNA_H-elongata_contig81607.15828.1|Name=mRNA_H-elongata_contig81607.15828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig81607:1777..1977+ (Himanthalia elongata Himel1 dioecious)
GCAGGTTTTGAATCGGCTGACGAAGTGGAAGTGGTGGCCATCTCTCGCGG
CAGGGCTAGAAACAGGCCTCTCGCACCCAACTACGTACTCGCTGTGGATC
ACGGCCGGAGGGAGATCGTCCTCTCAATCAGAGGGACGAAGGCTTTCGGT
GATGCCATTACCGTCACACACTTTCGACCAGAGCCATTCCTCGACGGGTG
AGCAGGTTTTGAATCGGCTGACGAAGTGGAAGTGGTGGCCATCTCTCGCG
GCAGGGCTAGAAACAGGCCTCTCGCACCCAACTACGTACTCGCTGTGGAT
CACGGCCGGAGGGAGATCGTCCTCTCAATCAGAGGGACGAAGGCTTTCGG
TGATGCCATTACCGTCACACACTTTCGACCAGAGCCATTCCTCGACGGGT
GA
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