mRNA_H-elongata_contig81559.15824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81559.15824.1
Unique NamemRNA_H-elongata_contig81559.15824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.000e-28
Identity = 87/195 (44.62%), Postives = 109/195 (55.90%), Query Frame = 1 
Query:    1 QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARGGANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDGPATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAA--GLGTAATSSRADRQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVN 579
            QAL HKTLRPP+P EPALDNL+KFY++L  PP S    A                      + S  S + S       GVV    A     G        PA+G  R  GR+    ++RSAA++E+ DK+MA RRR A   L   A +  AD  G+  NP++RI+Q+Y G+GPYSLLYRLHEE RRA+VMIRRVN
Sbjct:  152 QALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGR--GRHG--LLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGR-FNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVN 341
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BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 9.380e-28
Identity = 81/195 (41.54%), Postives = 108/195 (55.38%), Query Frame = 1 
Query:    1 QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARGGANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDGPATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAA--GLGTAATSSRADRQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVN 579
            QAL HKTLRPP+P EPALDNL+KFY++L  P  S    A                      + S    + +       GV+   +A     G     +  P +G  R+  RY  + ++RSAA++E+ DK+MA RRR A   L   A +  AD   +  NP++RI+Q+Y G+GPYSLLYRLHEE RRA+VMIRRVN
Sbjct:  152 QALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRV--RY--SPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVN 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE5.000e-2844.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI9.380e-2841.54Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81559contigH-elongata_contig81559:1907..2714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionProtein with LSm motif. Putative LSm11
Ec32 orthologEc-23_002180.1
Hectar predicted targeting categoryother localisation
Exons3
Model size585
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81559.15824.1prot_H-elongata_contig81559.15824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81559 1907..2714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.6919188-CDS-H-elongata_contig81559:1906..21721622931223.6919188-CDS-H-elongata_contig81559:1906..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 1907..2172 +
1691679748.8857658-CDS-H-elongata_contig81559:1906..21721691679748.8857658-CDS-H-elongata_contig81559:1906..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 1907..2172 +
1622931223.7108107-CDS-H-elongata_contig81559:2256..24111622931223.7108107-CDS-H-elongata_contig81559:2256..2411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 2257..2411 +
1691679748.8960762-CDS-H-elongata_contig81559:2256..24111691679748.8960762-CDS-H-elongata_contig81559:2256..2411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 2257..2411 +
1622931223.7239714-CDS-H-elongata_contig81559:2550..27141622931223.7239714-CDS-H-elongata_contig81559:2550..2714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 2551..2714 +
1691679748.9075077-CDS-H-elongata_contig81559:2550..27141691679748.9075077-CDS-H-elongata_contig81559:2550..2714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81559 2551..2714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81559.15824.1

>prot_H-elongata_contig81559.15824.1 ID=prot_H-elongata_contig81559.15824.1|Name=mRNA_H-elongata_contig81559.15824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARG
GANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDG
PATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAAGLGTAATSSRAD
RQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVNR*
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mRNA from alignment at H-elongata_contig81559:1907..2714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81559.15824.1 ID=mRNA_H-elongata_contig81559.15824.1|Name=mRNA_H-elongata_contig81559.15824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at H-elongata_contig81559:1907..2714+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTGCGGCACAAGACCTTACGCCCCCCGTATCCCAACGAGCCCGC
CCTGGACAACTTGTCCAAGTTCTACAAGTTGCTGCGTAACCCCCCACCCT
CGGTGAAGGCAGTAGCTGGTCAAGCATCACCCGCGGCGGTCGCACGTGGC
GGGGCAAATAGCGCCTTCGTGCGGCAGACACCGACGGGTAGCGCGACTTC
TCGCTACAGCTCGATTCTCGACGAGTCTGCGGTCGGTGTCGTTAGCAATA
CCGACGCCATGAGCGAGTCTAATCAATCGAGTACCACAAGCTACGAGGGG
GGAGGTGGAAGCGCGGTCGGCGACCGTGTCGATGGTGGCCGGGACCGCAG
TCGCGGTGGTCCTTCTATAAGGATGGATGACGGTCCTGCCACGGGCGTAG
AACGTTTGACTGGTAGATATTATGGCACGTCGATTCTGAGATCCGCGGCA
GAGGTAGAGAAGATGGACAAAGAAATGGCTGACCGACGGCGAGCTGCTGG
GCTGGGTTCCGCAAAGTCGAGCGTTATTGGTGCAGGTGAGTTGCTGAGCG
AAGCATGTCTCTGGGCGTACGCGATGTAAAATAAGGGTGACGTGTCGATC
ATCCAAGTGTACCCTCGCTTGTCTCGAGACTCCAACGACCATAGGTACCG
CCGCAACGTCTTCCCGCGCAGATCGACAAGGACAGGGTGTAAATCCGTTG
GAGAGGATCATGCAGAAGTACGTCGGAACCGGCCCTTACAGTCTGCTCTA
CCGCCTGCACGAAGAAAAAAGGAGGGCCAATGTCATGATCCGGCGGGTGA
ATAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig81559:1907..2714+

>mRNA_H-elongata_contig81559.15824.1 ID=mRNA_H-elongata_contig81559.15824.1|Name=mRNA_H-elongata_contig81559.15824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig81559:1907..2714+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTGCGGCACAAGACCTTACGCCCCCCGTATCCCAACGAGCCCGC
CCTGGACAACTTGTCCAAGTTCTACAAGTTGCTGCGTAACCCCCCACCCT
CGGTGAAGGCAGTAGCTGGTCAAGCATCACCCGCGGCGGTCGCACGTGGC
GGGGCAAATAGCGCCTTCGTGCGGCAGACACCGACGGGTAGCGCGACTTC
TCGCTACAGCTCGATTCTCGACGAGTCTGCGGTCGGTGTCGTTAGCAATA
CCGACGCCATGAGCGACAGGCTCTGCGGCACAAGACCTTACGCCCCCCGT
ATCCCAACGAGCCCGCCCTGGACAACTTGTCCAAGTTCTACAAGTTGCTG
CGTAACCCCCCACCCTCGGTGAAGGCAGTAGCTGGTCAAGCATCACCCGC
GGCGGTCGCACGTGGCGGGGCAAATAGCGCCTTCGTGCGGCAGACACCGA
CGGGTAGCGCGACTTCTCGCTACAGCTCGATTCTCGACGAGTCTGCGGTC
GGTGTCGTTAGCAATACCGACGCCATGAGCGATCGCGGTGGTCCTTCTAT
AAGGATGGATGACGGTCCTGCCACGGGCGTAGAACGTTTGACTGGTAGAT
ATTATGGCACGTCGATTCTGAGATCCGCGGCAGAGGTAGAGAAGATGGAC
AAAGAAATGGCTGACCGACGGCGAGCTGCTGGGCTGGTCGCGGTGGTCCT
TCTATAAGGATGGATGACGGTCCTGCCACGGGCGTAGAACGTTTGACTGG
TAGATATTATGGCACGTCGATTCTGAGATCCGCGGCAGAGGTAGAGAAGA
TGGACAAAGAAATGGCTGACCGACGGCGAGCTGCTGGGCTGGGTACCGCC
GCAACGTCTTCCCGCGCAGATCGACAAGGACAGGGTGTAAATCCGTTGGA
GAGGATCATGCAGAAGTACGTCGGAACCGGCCCTTACAGTCTGCTCTACC
GCCTGCACGAAGAAAAAAGGAGGGCCAATGTCATGATCCGGCGGGTGAAT
AGGTAAGTACCGCCGCAACGTCTTCCCGCGCAGATCGACAAGGACAGGGT
GTAAATCCGTTGGAGAGGATCATGCAGAAGTACGTCGGAACCGGCCCTTA
CAGTCTGCTCTACCGCCTGCACGAAGAAAAAAGGAGGGCCAATGTCATGA
TCCGGCGGGTGAATAGGTAA
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