mRNA_H-elongata_contig81556.15823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81556.15823.1
Unique NamemRNA_H-elongata_contig81556.15823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: D8LQB7_ECTSI (Similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosa) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB7_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.440e-28
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PPSGVSA  D G+RLCSFDGDADRLVYHFFD+ GKWVL+DGDKIAALCAAFIH EL+ L LDK
Sbjct:  390 PPSGVSAANDTGKRLCSFDGDADRLVYHFFDDTGKWVLLDGDKIAALCAAFIHEELAKLGLDK 452
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BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A6H5JSA8_9PHAE (Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.630e-28
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PPSGVSA  D G+RLCSFDGDADRLVYHFFD+ GKWVL+DGDKIAALCAAFIH EL+ L LDK
Sbjct:  317 PPSGVSAANDTGKRLCSFDGDADRLVYHFFDDTGKWVLLDGDKIAALCAAFIHEELAKLGLDK 379
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BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A2D4C884_PYTIN (Phosphoacetylglucosamine mutase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C884_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 5.550e-20
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP G+S EADRG+R CS DGDADRLV+HFFDEEG W L+DGDKIA L A F   ++  L+L+K
Sbjct:  938 PPVGLSREADRGKRFCSLDGDADRLVFHFFDEEGAWHLLDGDKIACLFAEFFADKMRVLELEK 1000
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BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: M4BQX5_HYAAE (Phosphoacetylglucosamine mutase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQX5_HYAAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.220e-18
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PPS +S E DRG+R CS DGD DRLV+H+FDEEG W L+DG+KIA L A F+  +L+ L+LD+
Sbjct:  271 PPSNMSRENDRGKRYCSMDGDGDRLVFHYFDEEGTWHLLDGNKIACLFAEFLSEKLNALELDQ 333
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BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A8K1C7X8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7X8_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-18
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP G+S ++DRG+R CS DGDADR+V+H+FDEEG W L+DGDKIA L A F   +L  L+LD+
Sbjct:  272 PPVGLSRDSDRGKRFCSVDGDADRVVFHYFDEEGVWHLLDGDKIACLFADFFADKLRALELDR 334
[Close]
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: K3WXX5_GLOUD (Phosphoacetylglucosamine mutase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXX5_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-18
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP+G+S ++DRG+R CS DGDADR+V+H+FD+EG W L+DGDKIA L A F   +L  L+LD+
Sbjct:  273 PPTGLSRDSDRGKRYCSLDGDADRVVFHYFDQEGVWHLLDGDKIACLFAEFFADKLRILELDR 335
[Close]
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: W4G4H9_9STRA (Phosphoacetylglucosamine mutase n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4H9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.300e-18
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP+G S +ADRG+R CS DGDADR+V+H+FD++G W L+DGDKIA L A F   +L+ L+LD+
Sbjct:  304 PPAGFSRDADRGKRACSLDGDADRVVFHYFDDQGAWHLLDGDKIACLFADFFADKLAVLELDE 366
[Close]
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A662WL59_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL59_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.330e-18
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP+GVS ++DRG+R CS DGD DR+V+H+FD+EG W L+DG+KIA L A F+  +L  L+LD+
Sbjct: 1045 PPAGVSRDSDRGKRYCSMDGDGDRVVFHYFDDEGAWHLLDGNKIACLIAEFLAEKLHALELDQ 1107
[Close]
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A024TDR4_9STRA (Phosphoacetylglucosamine mutase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDR4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.290e-18
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    4 PSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDL 183
            P+G S +ADRG+R CS DGDADR+VYH+FD++GKW L+DGDKIA L A F   +L  LDL
Sbjct:  301 PAGFSRDADRGKRACSLDGDADRVVYHYFDDDGKWHLLDGDKIACLFADFFADKLRVLDL 360
[Close]
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Match: A0A5D6YGC5_9STRA (Phosphoacetylglucosamine mutase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGC5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.090e-17
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAAFIHAELSNLDLDK 189
            PP+G+S +ADRG+R CS DGD DR+V+H+ D++G W L+DGDKIA L A F   +L  L+LDK
Sbjct:  268 PPAGLSRDADRGKRYCSLDGDGDRVVFHYVDQDGAWHLLDGDKIACLFAEFFADKLRALELDK 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81556.15823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB7_ECTSI2.440e-2882.54Similar to Phosphoacetylglucosamine mutase (PAGM) ... [more]
A0A6H5JSA8_9PHAE2.630e-2882.54Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus... [more]
A0A2D4C884_PYTIN5.550e-2065.08Phosphoacetylglucosamine mutase n=1 Tax=Pythium in... [more]
M4BQX5_HYAAE1.220e-1860.32Phosphoacetylglucosamine mutase n=1 Tax=Hyaloperon... [more]
A0A8K1C7X8_PYTOL1.670e-1860.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WXX5_GLOUD1.670e-1858.73Phosphoacetylglucosamine mutase n=1 Tax=Globispora... [more]
W4G4H9_9STRA2.300e-1858.73Phosphoacetylglucosamine mutase n=7 Tax=Aphanomyce... [more]
A0A662WL59_9STRA2.330e-1857.14Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A024TDR4_9STRA4.290e-1863.33Phosphoacetylglucosamine mutase n=1 Tax=Aphanomyce... [more]
A0A5D6YGC5_9STRA1.090e-1757.14Phosphoacetylglucosamine mutase n=1 Tax=Pythium br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81556contigH-elongata_contig81556:622..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D8LQB7
Preferred namePGM3
KEGG rclassRC00408
KEGG koko:K01836,ko:K20523
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0000003,GO:0000271,GO:0001704,GO:0001707,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004610,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009653,GO:0009790,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010383,GO:0010646,GO:0010647,GO:0016051,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019953,GO:0022414,GO:0023051,GO:0023056,GO:0030097,GO:0032501,GO:0032502,GO:0032504,GO:0033692,GO:0034221,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0040036,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045743,GO:0046349,GO:0046483,GO:0048232,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051278,GO:0051704,GO:0055086,GO:0060438,GO:0060541,GO:0065007,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090287,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphoacetylglucosamine mutase activity
EggNOG OGsCOG1109@1,KOG2537@2759
EC5.4.2.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.6213338-CDS-H-elongata_contig81556:621..7191622931223.6213338-CDS-H-elongata_contig81556:621..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81556 622..719 +
1691679748.8539917-CDS-H-elongata_contig81556:621..7191691679748.8539917-CDS-H-elongata_contig81556:621..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81556 622..719 +
1622931223.639967-CDS-H-elongata_contig81556:1325..14161622931223.639967-CDS-H-elongata_contig81556:1325..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81556 1326..1416 +
1691679748.8703458-CDS-H-elongata_contig81556:1325..14161691679748.8703458-CDS-H-elongata_contig81556:1325..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81556 1326..1416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81556.15823.1prot_H-elongata_contig81556.15823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81556 622..1416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81556.15823.1

>prot_H-elongata_contig81556.15823.1 ID=prot_H-elongata_contig81556.15823.1|Name=mRNA_H-elongata_contig81556.15823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
PPSGVSAEADRGRRLCSFDGDADRLVYHFFDEEGKWVLIDGDKIAALCAA
FIHAELSNLDLDK
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mRNA from alignment at H-elongata_contig81556:622..1416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81556.15823.1 ID=mRNA_H-elongata_contig81556.15823.1|Name=mRNA_H-elongata_contig81556.15823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig81556:622..1416+ (Himanthalia elongata Himel1 dioecious)
CCACCCTCCGGGGTTTCCGCGGAGGCCGACCGTGGCAGGCGGCTGTGCAG
CTTCGACGGTGACGCCGACCGACTGGTGTACCACTTCTTCGACGAAGAGT
GAGTGAAGAAGGGAGGGGGGTCTCGACCTCCCTCCCTCAATAAACATCCC
TCAATAAACAATACTCTTACGGTGATACTGAATTTGAAGAATGACTCACG
AAGTATTCGAATACGAAGGCTTATCGTATGATGCTACCGTCGAGGAGAGG
GGCATCGTTGTCCCTACAGGTGGCCGTGGCGCTATTGGTGCCAGCGGATT
GGGGGCCACGAGTGCGACGTATTGGTAGGCATTAGGCGTACGTGTACGAG
GGCTGGGCGAGCTTTTATTCTCCCCCCACCCGCACCCCACCCCACCCCCC
CGCCCAACGATGGATGATGGATGGCTTTGTGGGAATGGAGGGACATCTTA
AGTCTTTTCGGGTTTGTCTCGGTACGCGTCTGTATGCCTTTTGTGTGTGT
GTGTTTGTGTGTGTTTGTATTTTTTTAATTGCACATAACCGCGCAATCCG
GCTCTGTCATGCTAGTCCTTCTAGGCTACTCTCGCATTGATCATCCCAAT
GGAGGATTCAATAATATGTGCTACAAAAACCTCTATTAATGATCAGACGT
GACAAAAGAGACATACTATCGCTAGTGTGTGTGTGTGTGAACTCCCGCTG
GCAGGGGCAAATGGGTTCTCATTGACGGGGACAAGATCGCTGCGCTGTGC
GCCGCCTTCATCCACGCGGAGTTGTCCAACCTTGATCTCGACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig81556:622..1416+

>mRNA_H-elongata_contig81556.15823.1 ID=mRNA_H-elongata_contig81556.15823.1|Name=mRNA_H-elongata_contig81556.15823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig81556:622..1416+ (Himanthalia elongata Himel1 dioecious)
CCACCCTCCGGGGTTTCCGCGGAGGCCGACCGTGGCAGGCGGCTGTGCAG
CTTCGACGGTGACGCCGACCGACTGGTGTACCACTTCTTCGACGAAGACC
ACCCTCCGGGGTTTCCGCGGAGGCCGACCGTGGCAGGCGGCTGTGCAGCT
TCGACGGTGACGCCGACCGACTGGTGTACCACTTCTTCGACGAAGAGGGC
AAATGGGTTCTCATTGACGGGGACAAGATCGCTGCGCTGTGCGCCGCCTT
CATCCACGCGGAGTTGTCCAACCTTGATCTCGACAAGGGGCAAATGGGTT
CTCATTGACGGGGACAAGATCGCTGCGCTGTGCGCCGCCTTCATCCACGC
GGAGTTGTCCAACCTTGATCTCGACAAG
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