mRNA_H-elongata_contig81526.15821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81526.15821.1
Unique NamemRNA_H-elongata_contig81526.15821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81526.15821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81526contigH-elongata_contig81526:1454..1724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue6.4e-12
Seed eggNOG ortholog2880.D8LNG6
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.4091003-CDS-H-elongata_contig81526:1453..17231622931223.4091003-CDS-H-elongata_contig81526:1453..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81526 1454..1723 +
1691679748.7479558-CDS-H-elongata_contig81526:1453..17231691679748.7479558-CDS-H-elongata_contig81526:1453..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81526 1454..1723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81526.15821.1prot_H-elongata_contig81526.15821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81526 1454..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81526.15821.1

>prot_H-elongata_contig81526.15821.1 ID=prot_H-elongata_contig81526.15821.1|Name=mRNA_H-elongata_contig81526.15821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
KLTAFGPIPPALKLSPGLLDYEGLSRNSDHHRLTTTHGFRMRLGNVVGLD
VSLAPGVIPSRSEASQDFTGNLIEVFMSESLDLHASNMWL
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mRNA from alignment at H-elongata_contig81526:1454..1724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81526.15821.1 ID=mRNA_H-elongata_contig81526.15821.1|Name=mRNA_H-elongata_contig81526.15821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=271bp|location=Sequence derived from alignment at H-elongata_contig81526:1454..1724+ (Himanthalia elongata Himel1 dioecious)
AAACTTACTGCGTTCGGTCCGATTCCACCAGCTCTTAAGCTTTCGCCGGG
CTTGCTTGACTACGAAGGACTGTCTCGCAATAGCGATCATCATCGATTAA
CCACAACGCACGGCTTTCGAATGCGGCTCGGCAATGTTGTGGGGCTCGAT
GTATCCCTAGCGCCCGGTGTTATACCTAGCCGCAGCGAGGCGTCACAAGA
TTTTACTGGCAACTTGATTGAGGTATTCATGTCAGAGTCTTTGGATCTAC
ATGCCAGCAACATGTGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig81526:1454..1724+

>mRNA_H-elongata_contig81526.15821.1 ID=mRNA_H-elongata_contig81526.15821.1|Name=mRNA_H-elongata_contig81526.15821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig81526:1454..1724+ (Himanthalia elongata Himel1 dioecious)
AAACTTACTGCGTTCGGTCCGATTCCACCAGCTCTTAAGCTTTCGCCGGG
CTTGCTTGACTACGAAGGACTGTCTCGCAATAGCGATCATCATCGATTAA
CCACAACGCACGGCTTTCGAATGCGGCTCGGCAATGTTGTGGGGCTCGAT
GTATCCCTAGCGCCCGGTGTTATACCTAGCCGCAGCGAGGCGTCACAAGA
TTTTACTGGCAACTTGATTGAGGTATTCATGTCAGAGTCTTTGGATCTAC
ATGCCAGCAACATGTGGTTAAAACTTACTGCGTTCGGTCCGATTCCACCA
GCTCTTAAGCTTTCGCCGGGCTTGCTTGACTACGAAGGACTGTCTCGCAA
TAGCGATCATCATCGATTAACCACAACGCACGGCTTTCGAATGCGGCTCG
GCAATGTTGTGGGGCTCGATGTATCCCTAGCGCCCGGTGTTATACCTAGC
CGCAGCGAGGCGTCACAAGATTTTACTGGCAACTTGATTGAGGTATTCAT
GTCAGAGTCTTTGGATCTACATGCCAGCAACATGTGGTTA
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