mRNA_H-elongata_contig81525.15820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81525.15820.1
Unique NamemRNA_H-elongata_contig81525.15820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: D8LTU1_ECTSI (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.890e-30
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            VGASTAYHLALRGVKP+VIER+ VA AASGKAGGFLAGGWGSG TV +HE+ F MHEKLAE LGV SYRKI TL
Sbjct:   20 VGASTAYHLALRGVKPIVIERSNVAAAASGKAGGFLAGGWGSGPTVPMHEISFDMHEKLAETLGVTSYRKIPTL 93          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A7S0QTC4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTC4_9CRYP)

HSP 1 Score: 93.2 bits (230), Expect = 4.600e-22
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGD-TVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            +GAS AYHL+ RGV+PLV+ER+ V  AASGKAGGFLAGGWG G  T  LH + F MHE+LA+ LG+ S+RKI TL
Sbjct:   79 IGASIAYHLSKRGVQPLVVERSKVGAAASGKAGGFLAGGWGDGSVTQQLHRVSFRMHEELAKELGIKSFRKIETL 153          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A7S0HI94_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HI94_9CRYP)

HSP 1 Score: 87.0 bits (214), Expect = 2.660e-20
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    7 ASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            A+ AY+L+LRGV P +IER+ +ACAASGKAGGF+A GWG+GDT   HE+ F +HE+L+  L +  YRK+ TL
Sbjct:   56 AAIAYYLSLRGVAPTIIERSEIACAASGKAGGFMARGWGNGDTAEFHEVSFDLHEQLSRDLKLKGYRKLPTL 127          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: L1IC24_GUITC (DAO domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IC24_GUITC)

HSP 1 Score: 90.1 bits (222), Expect = 1.250e-19
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 ASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            A+ AY+L+LRGV P VIER+ +ACAASGKAGGFLA GWG+GDT  LHE+ F +HE+L++ L +  YRK+ TL
Sbjct:   20 AAIAYYLSLRGVAPTVIERSEIACAASGKAGGFLARGWGNGDTAELHEVSFDLHEQLSKDLKLKGYRKLPTL 91          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A7S0LNQ8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LNQ8_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 2.470e-18
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 GASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            GAS AY+LA RG +PL++E  GVA AASGK GGFLA  WGSG T  LH   F +HE+LA+ LG+ASYRKI  L
Sbjct:   29 GASLAYYLAQRGERPLIVEAVGVASAASGKGGGFLARDWGSGPTEQLHIESFKLHEELAQTLGIASYRKIPVL 101          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A835ZIK8_9STRA (FAD dependent oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.270e-18
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            + AS AYHL  +GVKP+V+ER+ VA AASGK+GGFLA  WGSG  V LH   F +HEKLA+ L V S+RK+ TL
Sbjct:   19 IAASIAYHLTQKGVKPIVLERSEVAAAASGKSGGFLARDWGSGPAVQLHTASFALHEKLAKELTVESFRKLPTL 92          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A7S0CUG7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUG7_MICPS)

HSP 1 Score: 84.0 bits (206), Expect = 2.640e-17
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    4 GASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGD-TVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            G +TAY LA RGV   ++ER  +A AASGKAGGFLAGGWG G  T  LH + F +HE LAE LG+ +YRKI TL
Sbjct:   51 GCATAYFLAQRGVPSTIVERVEIAAAASGKAGGFLAGGWGDGGVTQELHRVSFALHETLAETLGLTTYRKIPTL 124          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A7S2XXG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.530e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGD-TVGLHELGFGMHEKLAEVL 189
            +GAS AYHL L+G KP+VIER+ +A AASGKAGGFLAGGWG G  T  LH + F +H +LAE L
Sbjct:   69 IGASIAYHLTLKGEKPVVIERSKIAAAASGKAGGFLAGGWGDGSVTEALHRVSFKLHAQLAERL 132          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A0G4HCU1_9ALVE (DAO domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HCU1_9ALVE)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-16
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    4 GASTAYHLALRGVKPL---VIERTGVACAASGKAGGFLAGGWGSGDTVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            G STAYHLA +G   L   V+ER+GVA AASGKAGGFLA  WGSG T  LH++ F MH +LA+ L + S+R I+TL
Sbjct:   67 GVSTAYHLAKKGGNSLDITVVERSGVAAAASGKAGGFLARDWGSGPTDALHKISFRMHAELAKELNIESFRPIQTL 142          
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Match: A0A061QQ24_9CHLO (DAO domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQ24_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-15
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGD-TVGLHELGFGMHEKLAEVLGVASYRKIRTL 222
            +G S AY+L+ RG+ P+VIER+ +A AASGKAGGFLA  WG G  T  LH++ F +HE LA+ LG+ S+R++ TL
Sbjct:   16 IGTSIAYYLSKRGLSPVVIERSDIASAASGKAGGFLARDWGIGTVTQHLHQVSFDLHEDLAKELGIDSFRRLPTL 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81525.15820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU1_ECTSI4.890e-3082.43DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0QTC4_9CRYP4.600e-2265.33Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0HI94_9CRYP2.660e-2058.33Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1IC24_GUITC1.250e-1962.50DAO domain-containing protein n=2 Tax=Guillardia t... [more]
A0A7S0LNQ8_9EUKA2.470e-1863.01Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A835ZIK8_9STRA3.270e-1860.81FAD dependent oxidoreductase n=1 Tax=Tribonema min... [more]
A0A7S0CUG7_MICPS2.640e-1760.81Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S2XXG5_9STRA1.530e-1664.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0G4HCU1_9ALVE4.750e-1659.21DAO domain-containing protein n=1 Tax=Chromera vel... [more]
A0A061QQ24_9CHLO1.200e-1554.67DAO domain-containing protein n=1 Tax=Tetraselmis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81525contigH-elongata_contig81525:382..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LTU1
KEGG koko:K01228
KEGG ReactionR05979
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0006810,GO:0007049,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016192,GO:0016197,GO:0016482,GO:0016491,GO:0022414,GO:0031410,GO:0031982,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0055114,GO:0097708
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsCOG0665@1,KOG2852@2759
EC3.2.1.106
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-28_002770.1
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.3548129-CDS-H-elongata_contig81525:381..6031622931223.3548129-CDS-H-elongata_contig81525:381..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81525 382..603 -
1691679748.7326503-CDS-H-elongata_contig81525:381..6031691679748.7326503-CDS-H-elongata_contig81525:381..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81525 382..603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81525.15820.1prot_H-elongata_contig81525.15820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81525 382..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81525.15820.1

>prot_H-elongata_contig81525.15820.1 ID=prot_H-elongata_contig81525.15820.1|Name=mRNA_H-elongata_contig81525.15820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
VGASTAYHLALRGVKPLVIERTGVACAASGKAGGFLAGGWGSGDTVGLHE
LGFGMHEKLAEVLGVASYRKIRTL
back to top

mRNA from alignment at H-elongata_contig81525:382..603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81525.15820.1 ID=mRNA_H-elongata_contig81525.15820.1|Name=mRNA_H-elongata_contig81525.15820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig81525:382..603- (Himanthalia elongata Himel1 dioecious)
GTCGGGGCCAGCACGGCGTACCATCTCGCCCTGAGGGGGGTCAAGCCGCT GGTGATCGAGCGGACCGGCGTGGCTTGTGCCGCGAGCGGGAAGGCGGGGG GGTTTCTGGCTGGCGGCTGGGGAAGCGGGGATACCGTGGGCCTGCACGAG CTCGGCTTCGGTATGCACGAGAAGCTGGCAGAGGTTCTGGGGGTGGCGTC GTACCGGAAAATTCGGACACTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81525:382..603-

>mRNA_H-elongata_contig81525.15820.1 ID=mRNA_H-elongata_contig81525.15820.1|Name=mRNA_H-elongata_contig81525.15820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig81525:382..603- (Himanthalia elongata Himel1 dioecious)
GTCGGGGCCAGCACGGCGTACCATCTCGCCCTGAGGGGGGTCAAGCCGCT
GGTGATCGAGCGGACCGGCGTGGCTTGTGCCGCGAGCGGGAAGGCGGGGG
GGTTTCTGGCTGGCGGCTGGGGAAGCGGGGATACCGTGGGCCTGCACGAG
CTCGGCTTCGGTATGCACGAGAAGCTGGCAGAGGTTCTGGGGGTGGCGTC
GTACCGGAAAATTCGGACACTCGTCGGGGCCAGCACGGCGTACCATCTCG
CCCTGAGGGGGGTCAAGCCGCTGGTGATCGAGCGGACCGGCGTGGCTTGT
GCCGCGAGCGGGAAGGCGGGGGGGTTTCTGGCTGGCGGCTGGGGAAGCGG
GGATACCGTGGGCCTGCACGAGCTCGGCTTCGGTATGCACGAGAAGCTGG
CAGAGGTTCTGGGGGTGGCGTCGTACCGGAAAATTCGGACACTC
back to top