mRNA_H-elongata_contig81468.15815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81468.15815.1
Unique NamemRNA_H-elongata_contig81468.15815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.110e-18
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:  533 QQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENAL 691
            Q VTVELT+EE+AAVQNLMAMVPG GRD+VIEAFIACDKNAEMAANLLFENAL
Sbjct:  364 QTVTVELTEEEDAAVQNLMAMVPGAGRDQVIEAFIACDKNAEMAANLLFENAL 416
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.950e-8
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:  494 GEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFE 682
            GEQQ+      S Q  T  LT E+NAAV  LMA+VP + R RVIEA+++CDKN E A N+LF+
Sbjct:  163 GEQQESMDAGGSDQAPTAALTAEDNAAVDQLMAIVPNMSRQRVIEAYLSCDKNVEYAMNMLFD 225
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A371D609_9APHY (UV excision repair protein RAD23 n=2 Tax=Polyporus TaxID=5637 RepID=A0A371D609_9APHY)

HSP 1 Score: 59.7 bits (143), Expect = 2.560e-6
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 2 
Query:  332 HTQTLTLHPSKKSRVWCGTPRIEGLIEGIEEMEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENA 688
            H Q   L            P I+ L      + Q+ A D E+ L +  G      E  +EG  +  G QV +++T+EE AA++ L A+  G  R  VIEA+ ACDKN EMAAN LF++A
Sbjct:  279 HPQIQQLREILTQNPQLAQPLIQELARNNPALAQQMAADPEALLQLLGGM-----EDDEEGGGLPPGAQV-IQVTEEERAAIERLEAL--GFPRQAVIEAYFACDKNEEMAANYLFDSA 389
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A7S3FCZ8_9VIRI (Ubiquitin receptor RAD23 n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FCZ8_9VIRI)

HSP 1 Score: 56.2 bits (134), Expect = 7.200e-6
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:  440 AEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENAL 691
            A +++S   +  G  GG G+   EG  V     V +ELT+E+ A V  LMAM  G     V++A++ACDKN ++AAN LFE+ +
Sbjct:   99 AAEQQSMAAMMAGALGGEGDMDAEGPGV-----VNIELTEEDRANVDTLMAM--GFSEAAVVQAYLACDKNPDLAANYLFEHGM 175
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A1Y1UUG4_9TREE (UV excision repair protein RAD23 n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UUG4_9TREE)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-5
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:  509 EGADVLSGQQVT-VELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 685
            +G D + GQQ T + LTQEE AAV+ L A+  G  R  V++A++ACDKN E+AAN LFEN
Sbjct:  361 DGDDDMLGQQTTQINLTQEEAAAVERLEAL--GFDRAMVLQAYMACDKNEELAANFLFEN 418
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A0C3KKP1_PISTI (UV excision repair protein RAD23 n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3KKP1_PISTI)

HSP 1 Score: 56.2 bits (134), Expect = 1.370e-5
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:  389 PRIEGLIEGIEEMEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 685
            P I+ L     ++ Q  A D ++ L      SGG      EG D+  G QV V +T EE AA++ LMA+  G  R++  +A+ ACDKN E+AAN LFEN
Sbjct:  130 PLIQQLAASNPQLGQMLASDPDALLQFLGDLSGG---DDLEGGDLPPGVQV-VNVTPEEQAAIERLMAL--GFTREQAAQAYFACDKNEELAANYLFEN 222
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A4Q9Q3I7_9APHY (UV excision repair protein RAD23 n=2 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9Q3I7_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 2.600e-5
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 2 
Query:  332 HTQTLTLHPSKKSRVWCGTPRIEGLIEGIEEMEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENA 688
            H Q   L    +       P I+ L      + Q   ++ E    +  G   G G+   EG D+  G QV V +T+EE AA++ L A+  G  R  VIEA+ ACDKN E+AAN LF+ A
Sbjct:  277 HPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGALAGEGD---EGGDIPPGAQV-VHVTEEERAAIERLEAL--GFPRQAVIEAYFACDKNEELAANYLFDGA 389
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A0D7AFL8_9AGAR (UV excision repair protein RAD23 n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AFL8_9AGAR)

HSP 1 Score: 56.6 bits (135), Expect = 2.690e-5
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 2 
Query:  509 EGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENALL 694
            EG +V  G  V V +T EENAA+Q L A+  G  R   IEA++ACDKN E+AAN LFEN  +
Sbjct:  352 EGGEVPPGTHV-VNVTPEENAAIQRLEAL--GFPRQLAIEAYLACDKNEELAANYLFENGFM 410
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BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A851US54_9PASS (UV excision repair protein RAD23 (Fragment) n=1 Tax=Elachura formosa TaxID=1463973 RepID=A0A851US54_9PASS)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-5
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:  485 GGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFE 682
            GG G++  E  D++  Q + V LTQEE AAV+ L A+  G  R  V++A++ CDKN E+AAN LF+
Sbjct:  140 GGAGDEGDEDDDMMGPQVMHVNLTQEEAAAVERLEAL--GFDRQLVLQAYMLCDKNEELAANFLFD 203
[Close]
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A167PM91_CALVF (UV excision repair protein RAD23 n=2 Tax=Calocera TaxID=29888 RepID=A0A167PM91_CALVF)

HSP 1 Score: 56.2 bits (134), Expect = 3.490e-5
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  542 TVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 685
            T+++T EEN+A++ L+A+  G  RD VI+A+ ACDKN E+AAN LFEN
Sbjct:  350 TIQVTPEENSAIERLIAL--GFPRDIVIQAYFACDKNEELAANYLFEN 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KET6_9PHAE6.110e-1890.57UV excision repair protein RAD23 n=2 Tax=Ectocarpu... [more]
A0A836CLA0_9STRA7.950e-853.97UV excision repair protein RAD23 n=1 Tax=Tribonema... [more]
A0A371D609_9APHY2.560e-636.97UV excision repair protein RAD23 n=2 Tax=Polyporus... [more]
A0A7S3FCZ8_9VIRI7.200e-640.48Ubiquitin receptor RAD23 n=1 Tax=Prasinoderma sing... [more]
A0A1Y1UUG4_9TREE1.160e-555.00UV excision repair protein RAD23 n=1 Tax=Kockovael... [more]
A0A0C3KKP1_PISTI1.370e-541.41UV excision repair protein RAD23 n=1 Tax=Pisolithu... [more]
A0A4Q9Q3I7_9APHY2.600e-536.13UV excision repair protein RAD23 n=2 Tax=Dichomitu... [more]
A0A0D7AFL8_9AGAR2.690e-553.23UV excision repair protein RAD23 n=1 Tax=Fistulina... [more]
A0A851US54_9PASS2.790e-546.97UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A167PM91_CALVF3.490e-556.25UV excision repair protein RAD23 n=2 Tax=Calocera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81468contigH-elongata_contig81468:796..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.6e-18
Seed eggNOG ortholog2880.D8LSP6
Preferred nameRad23
KEGG koko:K10839,ko:K18180,ko:K20102
KEGG Pathwayko03420,ko04141,ko04714,map03420,map04141,map04714
GOsGO:0000003,GO:0000746,GO:0000747,GO:0000753,GO:0000767,GO:0000902,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006605,GO:0006612,GO:0006620,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010494,GO:0015031,GO:0015833,GO:0016043,GO:0019953,GO:0022414,GO:0031593,GO:0032182,GO:0032502,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0044764,GO:0044877,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0070628,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0140030,GO:1990904
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0011@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03051,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
Ec32 orthologEc-15_003090.1
Exons2
Model size1002
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81468.15815.1prot_H-elongata_contig81468.15815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81468 1220..1730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.6935983-UTR-H-elongata_contig81468:795..12191622931222.6935983-UTR-H-elongata_contig81468:795..1219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81468 796..1219 +
1691679748.3682733-UTR-H-elongata_contig81468:795..12191691679748.3682733-UTR-H-elongata_contig81468:795..1219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81468 796..1219 +
1622931222.7446425-UTR-H-elongata_contig81468:1730..20351622931222.7446425-UTR-H-elongata_contig81468:1730..2035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81468 1731..2035 +
1691679748.4137156-UTR-H-elongata_contig81468:1730..20351691679748.4137156-UTR-H-elongata_contig81468:1730..2035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81468 1731..2035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.7160547-CDS-H-elongata_contig81468:1219..13781622931222.7160547-CDS-H-elongata_contig81468:1219..1378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81468 1220..1378 +
1691679748.3923843-CDS-H-elongata_contig81468:1219..13781691679748.3923843-CDS-H-elongata_contig81468:1219..1378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81468 1220..1378 +
1622931222.7304022-CDS-H-elongata_contig81468:1616..17301622931222.7304022-CDS-H-elongata_contig81468:1616..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81468 1617..1730 +
1691679748.4033692-CDS-H-elongata_contig81468:1616..17301691679748.4033692-CDS-H-elongata_contig81468:1616..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81468 1617..1730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81468.15815.1

>prot_H-elongata_contig81468.15815.1 ID=prot_H-elongata_contig81468.15815.1|Name=mRNA_H-elongata_contig81468.15815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAA
VQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENALL*
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mRNA from alignment at H-elongata_contig81468:796..2035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81468.15815.1 ID=mRNA_H-elongata_contig81468.15815.1|Name=mRNA_H-elongata_contig81468.15815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1240bp|location=Sequence derived from alignment at H-elongata_contig81468:796..2035+ (Himanthalia elongata Himel1 dioecious)
ACCACTAGAGAATGCTACACTTGAAATAAGCAAACCCCCTCCTAGCATAT
CATCTCGGATCCTGATCCAACATGCATACAATGAGCGGAACAGAGACGGA
GGATGGGAAGGCTGAATGGATCCTTACTATATTATAGTTATAACGACTCC
AGGACTCGAGATTAAACACAACGGAGACAGACAGGGAAAATATCATACGA
TCGGCATATGATACGAGTACGGTAGCGAACTCAAGCCGGCTTGTTTGCTT
GTGTGAACCCGTTCATTCTGAAGACACAAGTGGTTTTGGGTCGAAGTATA
GCAAGGCAATCCGCTTAAAAGCAAGGATTGACACACCCAAACACTGACTC
TGCACCCTTCAAAAAAATCCCGTGTATGGTGTGGAACTCCAAGGATCGAG
GGCTTGATAGAGGGGATTGAGGAAATGGAGCAGGAATACGCCGAGGACGA
AGAATCACCTTTGGTAATCGGCGACGGCCGCAGCGGCGGTAGAGGGGAGC
AGCAGCAGGAGGGCGCCGACGTCCTGTCGGGTCAGCAAGTGACGGTCGAG
CTCACCCAGGAGGAAAACGCCGCGGTACAAAACGTGAGCAGGATTGTGTG
TAAGGAAATATCTTTTAAGGTGGGATGGATGTAGATACGCACACTCAAAC
ATGGCACGTATTACGCCGTATTATTATGCTAATGATTTCGTCCGCCGACC
GACCGACCGACTGCCTTGACACGCCTAGCCCAAATGCCTTTTCTCCCGCC
CTCTGACGTCTGACGTTTGACGCGTGACTTGTGTGTTTTCTTTGACGATG
TGTGTGATATGCACGACGCAGTTGATGGCGATGGTGCCAGGTGTTGGACG
GGATCGAGTGATCGAAGCATTTATCGCCTGCGATAAAAACGCGGAGATGG
CAGCTAACCTCCTCTTCGAGAACGCTCTACTATAACATATAGACGGATAA
GGACAAGAGAGAGAGATATATAGTCAAGAGTGCTTGGTCTTATGTTATTC
GTGACGAAGAGCGCTCGTTCGTTAGAGCTATCTCTCGCCAATCTTCGGTA
CATTTTAATGGTCTCTCTATGTCTTTTATCCAATTTAGTAGGTTTATCTT
GTGAAAATCTGAAGATACCAAAAATATATTATCAATTTCTTCTCTTTTTC
CTCTAATGTGGGCGGCGACGGGGTGTACTTTTGAGCCAAGACGTAAAATA
CTGTAGAGTGCGGGTTTACGAACCAATGACTCATCGCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig81468:796..2035+

>mRNA_H-elongata_contig81468.15815.1 ID=mRNA_H-elongata_contig81468.15815.1|Name=mRNA_H-elongata_contig81468.15815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig81468:796..2035+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGGAATACGCCGAGGACGAAGAATCACCTTTGGTAATCGGCGA
CGGCCGCAGCGGCGGTAGAGGGGAGCAGCAGCAGGAGGGCGCCGACGTCC
TGTCGGGTCAGCAAGTGACGGTCGAGCTCACCCAGGAGGAAAACGCCGCG
GTACAAAACATGGAGCAGGAATACGCCGAGGACGAAGAATCACCTTTGGT
AATCGGCGACGGCCGCAGCGGCGGTAGAGGGGAGCAGCAGCAGGAGGGCG
CCGACGTCCTGTCGGGTCAGCAAGTGACGGTCGAGCTCACCCAGGAGGAA
AACGCCGCGGTACAAAACTTGATGGCGATGGTGCCAGGTGTTGGACGGGA
TCGAGTGATCGAAGCATTTATCGCCTGCGATAAAAACGCGGAGATGGCAG
CTAACCTCCTCTTCGAGAACGCTCTACTATAATTGATGGCGATGGTGCCA
GGTGTTGGACGGGATCGAGTGATCGAAGCATTTATCGCCTGCGATAAAAA
CGCGGAGATGGCAGCTAACCTCCTCTTCGAGAACGCTCTACTATAA
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