mRNA_H-elongata_contig81437.15812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81437.15812.1
Unique NamemRNA_H-elongata_contig81437.15812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81437.15812.1 vs. uniprot
Match: D7G703_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G703_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.190e-46
Identity = 136/314 (43.31%), Postives = 173/314 (55.10%), Query Frame = 1 
Query:    1 DAEAAFKKLATAFEKLVDPAQQAACLAESS-RKRARPDK-RGGTGRAGRTSEEGWRPGGEERTEPR----------RWCKEGENGPKEKTGKESTPDAAGQKRPIQEFMDDFAQQEVLFKEQVAQRAERLAERKRAKEEARAAADQERVDRLRENILGGPAGEEAAFEAKTASWQSFASVAARRRSNLAPRASPGEKKSRRVGAGRKGGGGRDSACAKDPSV-EENTREGDDWSKGDVADAASEAGTTSLGRGSGAQKRSRATEDDGPAREHGAGVVFACLVCRRGFKSAEGLARHEAQSELHRMNVQLSEVLS 903
            DAEAAFKKL  AFEKL DPAQQA C AE+  R R RP K RG +   GR SE     GG E +  R          RWC+EGE  P+ +  +E  PD  G+ RP+ EF+++F Q+E  FKE+VA+  E  AER      AR+  +QER++RLR+++LG    E    EAKTASW  F S            A   EK  R+     KG     + C++  +   E +  G +  +GDV D         L +G GA   +  + D   A E  AG  FAC VCRRGFKSA+GLA+HEA+SELH +NVQL E LS
Sbjct:   25 DAEAAFKKLTAAFEKLHDPAQQALCRAEAEQRNRGRPRKHRGDSSSGGRPSESRHEYGGGETSSARSGGNGPAEAPRWCREGEYVPEAERKREEGPDT-GKTRPMDEFLEEFEQREKAFKEEVARAKETNAERXXXXXXARSVQEQERMNRLRDDVLGSDGSE---VEAKTASWLKFNSTTXXXXXXXXXXAGRREKAKRKNS---KGVCSPVATCSQRQAYGAEGSGSGVEGREGDVGD---------LKKGGGADAAAGRSGDSSVAGEKAAGSGFACWVCRRGFKSAKGLAQHEAKSELHAINVQLREFLS 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81437.15812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G703_ECTSI4.190e-4643.31Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81437contigH-elongata_contig81437:61..2210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size912
Cds size912
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81437.15812.1prot_H-elongata_contig81437.15812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81437 61..2210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.486413-CDS-H-elongata_contig81437:60..6061622931222.486413-CDS-H-elongata_contig81437:60..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 61..606 -
1691679748.226668-CDS-H-elongata_contig81437:60..6061691679748.226668-CDS-H-elongata_contig81437:60..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 61..606 -
1622931222.5012765-CDS-H-elongata_contig81437:1077..11731622931222.5012765-CDS-H-elongata_contig81437:1077..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 1078..1173 -
1691679748.2460158-CDS-H-elongata_contig81437:1077..11731691679748.2460158-CDS-H-elongata_contig81437:1077..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 1078..1173 -
1622931222.513979-CDS-H-elongata_contig81437:1940..22101622931222.513979-CDS-H-elongata_contig81437:1940..2210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 1941..2210 -
1691679748.2571664-CDS-H-elongata_contig81437:1940..22101691679748.2571664-CDS-H-elongata_contig81437:1940..2210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81437 1941..2210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81437.15812.1

>prot_H-elongata_contig81437.15812.1 ID=prot_H-elongata_contig81437.15812.1|Name=mRNA_H-elongata_contig81437.15812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
DAEAAFKKLATAFEKLVDPAQQAACLAESSRKRARPDKRGGTGRAGRTSE
EGWRPGGEERTEPRRWCKEGENGPKEKTGKESTPDAAGQKRPIQEFMDDF
AQQEVLFKEQVAQRAERLAERKRAKEEARAAADQERVDRLRENILGGPAG
EEAAFEAKTASWQSFASVAARRRSNLAPRASPGEKKSRRVGAGRKGGGGR
DSACAKDPSVEENTREGDDWSKGDVADAASEAGTTSLGRGSGAQKRSRAT
EDDGPAREHGAGVVFACLVCRRGFKSAEGLARHEAQSELHRMNVQLSEVL
SKG*
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mRNA from alignment at H-elongata_contig81437:61..2210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81437.15812.1 ID=mRNA_H-elongata_contig81437.15812.1|Name=mRNA_H-elongata_contig81437.15812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2150bp|location=Sequence derived from alignment at H-elongata_contig81437:61..2210- (Himanthalia elongata Himel1 dioecious)
GATGCAGAAGCCGCGTTCAAGAAGCTCGCCACTGCCTTCGAGAAGCTCGT
CGATCCGGCCCAGCAAGCGGCCTGCTTGGCAGAGTCGTCGCGAAAACGCG
CTCGGCCGGACAAACGAGGTGGCACGGGTCGCGCTGGTAGGACAAGCGAG
GAAGGGTGGAGACCAGGCGGCGAAGAACGTACCGAACCTCGTCGCTGGTG
CAAGGAGGGCGAGAACGGACCGAAAGAGAAGACGGGGAAGGAGTCGACGC
CGGATGCCGCGGGGCAAAAGGTGCGGTGAAGAATCTGGCAATTGAAATAA
CTATTATTATAGAAAACCAGCCAGCACTGATGCTACCTATTTTTTTAGAA
GCTTACGACGGTTAGAGAGAGGAGGTGTTCGCTGTTGAATAGTGGCAGAG
AGAGGTGTTCGGGTTGGCGTCGTCAGACTTGTTTGTCACCCCGCTGCGGC
GTGTAGTCGTGGACGTAGCAAAGGGTTAAGATTCTTGTGGGCGTGTTGGC
ATGGCTTGGCGGCCGTAATATATGCAAGAGAGACAGAGAGAGGGGGAGTG
ATATTGTCTATGGTGGCGACGACGGTGCCAATACTGGGTAAGATTTAAGA
TTTGCGCTAAAAAAAGCCTTCGCCCACACATCCAAAGACGGAAACTTGGG
GTTACAGATCCGCTGGCGTTGCGTCGGGGGATCAACCTCACAGCCCCGCC
TGCTGTTGCTGGGGGCGCGCACGTTGAGCGTAATGGTCAACTGCGAGAGC
GAGCGTAGGGTTGACATTGTTTCTATAGCAATTTATTTCCAAATGCGTCG
TCTTCTCGTGAGCTGCACGCAACGCCGTCTGCCTCGTACTGACCTCGTCA
CAGACACTCCTGTGCGCTCCCGAGCTCGTCCTCGAAGAAATTATTTTAGT
CTACGAACCAATCTCTCATACATTGTAACATTGCGGACGCAGTCGAAAAC
AAAAACACCAGCGCACCGTGTTGCTCGAGCATTTATATTACCTCCCATCC
CCCCCTGGCTTTTGCGCGCTGTTGGTGGCAGAAAGAGCGGCCAATACAGG
AATTCATGGACGATTTCGCGCAGCAGGAGGTGTTGTTCAAGGAACAGGTT
GCACAAAGGGCAGAACGCCTCGCTGAGAGGAAGGTCAGGTCGCCGCCTTC
TGCCTCGAATCGTATCGGAACCCTTATCGCGCGACTGAATGCTACCGCAC
CAGTCTCCTGGCACAACCCATCTTAATAACCAACAAACTTTTTGCTGATA
AACTGTGGACTCGATGCGATTATTATCGGGGGAACTGATTAATCACAATG
TGGCGATTTTGTGCTTACAAGTATTTTAGTAATGTACACATTTCGAACCT
GACGATAGTTGTTCCGCTGGATGGCACCTACCTCTCACGCTGCTAAGAAG
GCGTGAGGGGTTCGGAGGGTTGGAATGAGTTGATAGGTTATTTTAAGGAA
AATACTTATTATAATCATGCCCTTCTTTCATCTAAAACCTTCTAGGAAGT
ACAAAAACCCGTAGATAAAACACCCTCTTTCCGTCGCTCACGTTAGATAG
TGCCCACCCCGCGTATGCCCCCCCCCCCCCGACCTTCCCTCACGGTGGTT
GCAGCGCGCGAAGGAGGAAGCTCGCGCGGCCGCAGACCAAGAGCGCGTCG
ATCGCCTGCGCGAGAATATCCTCGGAGGCCCCGCGGGCGAGGAGGCGGCG
TTCGAGGCGAAGACGGCGTCGTGGCAAAGTTTTGCCTCCGTAGCAGCCCG
ACGGAGGTCAAACCTCGCACCACGAGCATCACCGGGCGAGAAGAAGAGTC
GAAGGGTGGGGGCAGGCAGGAAAGGGGGCGGCGGCCGCGATAGCGCTTGC
GCAAAGGACCCAAGCGTCGAGGAAAACACCCGCGAAGGGGACGATTGGAG
TAAGGGCGACGTTGCAGACGCTGCATCCGAGGCGGGGACAACGTCGCTTG
GAAGGGGAAGCGGAGCACAAAAAAGAAGTCGGGCGACAGAGGACGACGGA
CCGGCGAGAGAGCATGGGGCAGGGGTGGTGTTCGCATGCTTGGTTTGTCG
GCGTGGGTTCAAGTCGGCCGAAGGGCTTGCTCGACACGAAGCTCAGTCGG
AGCTTCACCGGATGAACGTACAGCTGAGCGAAGTCTTGTCGAAAGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig81437:61..2210-

>mRNA_H-elongata_contig81437.15812.1 ID=mRNA_H-elongata_contig81437.15812.1|Name=mRNA_H-elongata_contig81437.15812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig81437:61..2210- (Himanthalia elongata Himel1 dioecious)
GATGCAGAAGCCGCGTTCAAGAAGCTCGCCACTGCCTTCGAGAAGCTCGT
CGATCCGGCCCAGCAAGCGGCCTGCTTGGCAGAGTCGTCGCGAAAACGCG
CTCGGCCGGACAAACGAGGTGGCACGGGTCGCGCTGGTAGGACAAGCGAG
GAAGGGTGGAGACCAGGCGGCGAAGAACGTACCGAACCTCGTCGCTGGTG
CAAGGAGGGCGAGAACGGACCGAAAGAGAAGACGGGGAAGGAGTCGACGC
CGGATGCCGCGGGGCAAAAGGATGCAGAAGCCGCGTTCAAGAAGCTCGCC
ACTGCCTTCGAGAAGCTCGTCGATCCGGCCCAGCAAGCGGCCTGCTTGGC
AGAGTCGTCGCGAAAACGCGCTCGGCCGGACAAACGAGGTGGCACGGGTC
GCGCTGGTAGGACAAGCGAGGAAGGGTGGAGACCAGGCGGCGAAGAACGT
ACCGAACCTCGTCGCTGGTGCAAGGAGGGCGAGAACGGACCGAAAGAGAA
GACGGGGAAGGAGTCGACGCCGGATGCCGCGGGGCAAAAGCGGCCAATAC
AGGAATTCATGGACGATTTCGCGCAGCAGGAGGTGTTGTTCAAGGAACAG
GTTGCACAAAGGGCAGAACGCCTCGCTGAGAGGAAGCGGCCAATACAGGA
ATTCATGGACGATTTCGCGCAGCAGGAGGTGTTGTTCAAGGAACAGGTTG
CACAAAGGGCAGAACGCCTCGCTGAGAGGAAGCGCGCGAAGGAGGAAGCT
CGCGCGGCCGCAGACCAAGAGCGCGTCGATCGCCTGCGCGAGAATATCCT
CGGAGGCCCCGCGGGCGAGGAGGCGGCGTTCGAGGCGAAGACGGCGTCGT
GGCAAAGTTTTGCCTCCGTAGCAGCCCGACGGAGGTCAAACCTCGCACCA
CGAGCATCACCGGGCGAGAAGAAGAGTCGAAGGGTGGGGGCAGGCAGGAA
AGGGGGCGGCGGCCGCGATAGCGCTTGCGCAAAGGACCCAAGCGTCGAGG
AAAACACCCGCGAAGGGGACGATTGGAGTAAGGGCGACGTTGCAGACGCT
GCATCCGAGGCGGGGACAACGTCGCTTGGAAGGGGAAGCGGAGCACAAAA
AAGAAGTCGGGCGACAGAGGACGACGGACCGGCGAGAGAGCATGGGGCAG
GGGTGGTGTTCGCATGCTTGGTTTGTCGGCGTGGGTTCAAGTCGGCCGAA
GGGCTTGCTCGACACGAAGCTCAGTCGGAGCTTCACCGGATGAACGTACA
GCTGAGCGAAGTCTTGTCGAAAGGGTAACGCGCGAAGGAGGAAGCTCGCG
CGGCCGCAGACCAAGAGCGCGTCGATCGCCTGCGCGAGAATATCCTCGGA
GGCCCCGCGGGCGAGGAGGCGGCGTTCGAGGCGAAGACGGCGTCGTGGCA
AAGTTTTGCCTCCGTAGCAGCCCGACGGAGGTCAAACCTCGCACCACGAG
CATCACCGGGCGAGAAGAAGAGTCGAAGGGTGGGGGCAGGCAGGAAAGGG
GGCGGCGGCCGCGATAGCGCTTGCGCAAAGGACCCAAGCGTCGAGGAAAA
CACCCGCGAAGGGGACGATTGGAGTAAGGGCGACGTTGCAGACGCTGCAT
CCGAGGCGGGGACAACGTCGCTTGGAAGGGGAAGCGGAGCACAAAAAAGA
AGTCGGGCGACAGAGGACGACGGACCGGCGAGAGAGCATGGGGCAGGGGT
GGTGTTCGCATGCTTGGTTTGTCGGCGTGGGTTCAAGTCGGCCGAAGGGC
TTGCTCGACACGAAGCTCAGTCGGAGCTTCACCGGATGAACGTACAGCTG
AGCGAAGTCTTGTCGAAAGGGTAA
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