mRNA_H-elongata_contig8143.15808.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8143.15808.1
Unique NamemRNA_H-elongata_contig8143.15808.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8143.15808.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.810e-34
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  247 DFLPIPLSEDS-----GNA-SPVSLQI-------RKNTGQKHDEGIKHITQAMRELASEANAVDEELYRFVSAKFCAQLHEVGLLEHPLVMEELASFEPIYNMCNNSSWVATTLERFEPLISEDCRLYKPMDHP 609
            DF P P  +       G+A +P  L++       R+NTG KH+EGIKHIT  +RE AS ANAVDE L+ F+SAKFC +L E GLL HPLV  +LA++EP+ + CN+ +W   TLERF P+  ++CRLY+P D P
Sbjct:  253 DFFPAPKRQHRQLPSIGDADAPAPLEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFISAKFCERLRETGLLHHPLVSAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFDKP 386
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BLAST of mRNA_H-elongata_contig8143.15808.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 6.230e-33
Identity = 66/127 (51.97%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  247 DFLPIPL--------SEDSGNASPVSLQIRKNTGQKHDEGIKHITQAMRELASEANAVDEELYRFVSAKFCAQLHEVGLLEHPLVMEELASFEPIYNMCNNSSWVATTLERFEPLISEDCRLYKPMD 603
            DF P P         SED+   +    Q R NTG KH+EGIKHIT  +R+ A  ANAVDE L+ FVSAKFC +L E GLL HPLV  ELA++EP+   CN+ +W   TLERF P++ ++CRLY+P D
Sbjct:  272 DFFPAPRHRHRQLSSSEDAKEGAAAGPQ-RHNTGSKHEEGIKHITPELRDAARSANAVDEALHEFVSAKFCERLRETGLLHHPLVGAELATYEPLERRCNDETWAKDTLERFAPIMPDECRLYQPFD 397
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BLAST of mRNA_H-elongata_contig8143.15808.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.600e-23
Identity = 60/162 (37.04%), Postives = 84/162 (51.85%), Query Frame = 1 
Query:  256 PIPLSEDSGNASPVSLQIRKNTGQKHDEGIKHITQAMRELASEANAVDEELYRFVSAKFCAQLHEVGLLEHPLVMEELASFEPIYNM----------------------------------------------CNNSSWVATTLERFEPLISEDCRLYKPMD 603
            P+  SED+  ++    Q R+NTG KH+EG+KHIT  +R+ A  ANAVDE L+  VSAKFC +L E GLL HPLV+ ELA++EP+ +                                               CN+ +W   TLERF P++ ++CRLY+P +
Sbjct:  267 PVYSSEDAKESAASGPQ-RQNTGAKHEEGMKHITPELRDAARSANAVDEALHELVSAKFCERLREAGLLHHPLVVAELATYEPLEHRYAIGFVLCQAFGWGEADLRVWPCMIRCSRSETPSFFALPLSVSVPRCNDETWAKDTLERFAPIMPDECRLYQPFE 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8143.15808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L244_9PHAE4.810e-3450.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWY0_ECTSI6.230e-3351.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAL5_9PHAE1.600e-2337.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8143contigH-elongata_contig8143:2220..4299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size807
Cds size297
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.1724234-UTR-H-elongata_contig8143:2219..23661622931222.1724234-UTR-H-elongata_contig8143:2219..2366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 2220..2366 -
1691679748.0713568-UTR-H-elongata_contig8143:2219..23661691679748.0713568-UTR-H-elongata_contig8143:2219..2366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 2220..2366 -
1622931222.2143304-UTR-H-elongata_contig8143:2995..30811622931222.2143304-UTR-H-elongata_contig8143:2995..3081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 2996..3081 -
1691679748.101602-UTR-H-elongata_contig8143:2995..30811691679748.101602-UTR-H-elongata_contig8143:2995..3081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 2996..3081 -
1622931222.2269578-UTR-H-elongata_contig8143:3471..35041622931222.2269578-UTR-H-elongata_contig8143:3471..3504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 3472..3504 -
1691679748.1122375-UTR-H-elongata_contig8143:3471..35041691679748.1122375-UTR-H-elongata_contig8143:3471..3504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 3472..3504 -
1622931222.24201-UTR-H-elongata_contig8143:3514..35661622931222.24201-UTR-H-elongata_contig8143:3514..3566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 3515..3566 -
1691679748.1298919-UTR-H-elongata_contig8143:3514..35661691679748.1298919-UTR-H-elongata_contig8143:3514..3566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 3515..3566 -
1622931222.2579348-UTR-H-elongata_contig8143:4107..42991622931222.2579348-UTR-H-elongata_contig8143:4107..4299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 4108..4299 -
1691679748.144352-UTR-H-elongata_contig8143:4107..42991691679748.144352-UTR-H-elongata_contig8143:4107..4299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8143 4108..4299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.1896002-CDS-H-elongata_contig8143:2366..25111622931222.1896002-CDS-H-elongata_contig8143:2366..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8143 2367..2511 -
1691679748.0814342-CDS-H-elongata_contig8143:2366..25111691679748.0814342-CDS-H-elongata_contig8143:2366..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8143 2367..2511 -
1622931222.2011292-CDS-H-elongata_contig8143:2843..29951622931222.2011292-CDS-H-elongata_contig8143:2843..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8143 2844..2995 -
1691679748.0911243-CDS-H-elongata_contig8143:2843..29951691679748.0911243-CDS-H-elongata_contig8143:2843..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8143 2844..2995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8143.15808.1prot_H-elongata_contig8143.15808.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8143 2367..2995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8143.15808.1

>prot_H-elongata_contig8143.15808.1 ID=prot_H-elongata_contig8143.15808.1|Name=mRNA_H-elongata_contig8143.15808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MRELASEANAVDEELYRFVSAKFCAQLHEVGLLEHPLVMEELASFEPIYN
MCNNSSWVATTLERFEPLISEDCRLYKPMDHPQGLGRALVTVEASTQP*
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mRNA from alignment at H-elongata_contig8143:2220..4299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8143.15808.1 ID=mRNA_H-elongata_contig8143.15808.1|Name=mRNA_H-elongata_contig8143.15808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2080bp|location=Sequence derived from alignment at H-elongata_contig8143:2220..4299- (Himanthalia elongata Himel1 dioecious)
GAATTATTTCGAATGCTTTCTTCAGACGGTCATCACGACAAAATTCCGGA
ACGTAGCCTCGAGAATGTTCGCGGGGCGACCGGCGTACGCTTCAGATACC
ATTTGCATGGATATAGCGGACTCCAAGGAATGTATTGACGATCTGCCGTC
GGCGATACGTGGGGCATGCAAGTTCAACTTCATCACGATGTGGCAAGTTT
AAAAAAAGCCGTCGTTTCCCCCGTGTGGATCCCGATATACGAATGTTGCA
GCTCATCATCGATGTCGGTCGGTGATCTCTAGAATATCGCACAGGTTTGT
AGAGAACTGGGCAAAAGTCGATTTCGTATTTCAAAGGGTACTTGTTGTTG
TTGTTGTTGATGATTTTCACATTCACCGCATTGGTTGCCAACCCGAAAAA
ACTACTCTAAACGGTGGCCAATCCCGCTCGTGGGCTGCTGAGCAGGGGAA
AATAAATAAAGAAAAAGATAAAAAATAAAAAGTCTGGCAGCGCGACTATC
CCGCCCCAAATCTCAGCTTCTTGATGCTTCTTGTAAAATGAAGAATAATA
TTGACTGATAGATAGATATGGAACTACTTCCAGCCTACTGGCACGAGCTC
CATATAATTTTAACCGGTGCCCAATTCAGCATATCAGACGTGTTTGGAGC
ATTTCGAAGTCATCAATTTATTACGACCGCCCAACCTGGCCAAACCTCTC
TCCGCAACCCGTTCGTTCGTGGATGCCGACCAGTGAGGCTTGGAGCACAT
CTGTGCTTCTGTTGTTCGAAACGCTGCCCTGGATCGCGCCTTCAGAGGAT
TTCCTCCCAATTCCTCTCTCGGAGGACTGTGAGTTTTAGCCTTTGTTTGA
TTCTGACAGATTCTCAAGACTACCCTTGATATAAGTTTGAGCTGTCGCAG
ACGAGGAGAAGATTCATGTCCGGGTGGGACGCGATAATCCCAGCTGTAAA
ACTAAGTGATGGGATGCTCGCCCCTATTTTAGAAATCTCGAGCAGGATTG
ATCGTACCCTGACAATGAAGCCCGTCCATTCTCTCTGTTTCGATTTTTCT
GTGGTAAAAGATGTGAAAACAGTTTCAGCCAGTACATCTTACTGAGTGGA
CAAGATCGACGTTGTAATGATAAAAATCATCATCGCTCACATGGTCATGT
GCATAAATCGTGAAATCGTAATTGGTATCCACGTGCTTATAAGCAAATTC
GTGCGGGATTTCTTGCAGCGGGAAACGCCTCGCCTGTTTCCCTGCAGATA
AGGAAGAATACCGGCCAAAAGCACGATGAAGGCATAAAGCACATCACCCA
AGCGATGCGCGAGTTGGCCAGTGAAGCGAATGCTGTTGATGAGGAGCTTT
ATCGGTTTGTGTCCGCCAAGTTCTGCGCCCAATTGCATGAGGTTGGCCTT
CTCGAGCATCCGCTCGTGATGGAAGAATTGGCGAGTTTTGAGCCAATTTA
CAACATGTGAGGACCGAAGTTCGCGGGAGGACGGTTAATATTCGAAGAGG
CAACAACGCTCCTCTTGACCACAGGATGTTGTATGATGTGATTGTAGCAC
AGTCTCTTGAAAGGCCGACTGTGACCAATGAGGTGTCAAGCTGCGCTTCT
CTTTCAGGGACGGTAGACTATATCGACACCCTGGAACATATACATACCGA
GTATGCGCTAGATTATGCAAAGTAGACGAAGGGCTGTAGGGTGACTGAAA
TTTGACTCTGGTAGATTCGAAAATCGCTAGTTTAGGCTTTCTAAGTTCTC
CGTTTTCTTCGCTTATTGTTTGTTTTGTGGGATGTCAGGTGCAACAACAG
CTCATGGGTGGCAACGACCCTAGAGCGCTTTGAGCCACTGATATCAGAAG
ACTGCCGACTGTACAAGCCCATGGACCACCCTCAAGGGCTAGGAAGAGCA
CTGGTGACTGTAGAAGCCTCTACCCAACCTTGAACTGATAAAGTTATGAT
TACACCTTCCATATGGGTGTGTAGCTTTAGTGAAAATTATCCCCCAGATA
TAAATGCCACCAATATATTTTCTTGGCAATGTCTCGTACAGCATAACGGT
GTGGTTTTTATCGCGAAGATATTTCCCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig8143:2220..4299-

>mRNA_H-elongata_contig8143.15808.1 ID=mRNA_H-elongata_contig8143.15808.1|Name=mRNA_H-elongata_contig8143.15808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig8143:2220..4299- (Himanthalia elongata Himel1 dioecious)
ATGCGCGAGTTGGCCAGTGAAGCGAATGCTGTTGATGAGGAGCTTTATCG
GTTTGTGTCCGCCAAGTTCTGCGCCCAATTGCATGAGGTTGGCCTTCTCG
AGCATCCGCTCGTGATGGAAGAATTGGCGAGTTTTGAGCCAATTTACAAC
ATATGCGCGAGTTGGCCAGTGAAGCGAATGCTGTTGATGAGGAGCTTTAT
CGGTTTGTGTCCGCCAAGTTCTGCGCCCAATTGCATGAGGTTGGCCTTCT
CGAGCATCCGCTCGTGATGGAAGAATTGGCGAGTTTTGAGCCAATTTACA
ACATGTGCAACAACAGCTCATGGGTGGCAACGACCCTAGAGCGCTTTGAG
CCACTGATATCAGAAGACTGCCGACTGTACAAGCCCATGGACCACCCTCA
AGGGCTAGGAAGAGCACTGGTGACTGTAGAAGCCTCTACCCAACCTTGAG
TGCAACAACAGCTCATGGGTGGCAACGACCCTAGAGCGCTTTGAGCCACT
GATATCAGAAGACTGCCGACTGTACAAGCCCATGGACCACCCTCAAGGGC
TAGGAAGAGCACTGGTGACTGTAGAAGCCTCTACCCAACCTTGA
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