mRNA_H-elongata_contig8140.15802.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8140.15802.1
Unique NamemRNA_H-elongata_contig8140.15802.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8140.15802.1 vs. uniprot
Match: A0A6H5KD78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD78_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 4.070e-50
Identity = 108/204 (52.94%), Postives = 130/204 (63.73%), Query Frame = 1 
Query:    1 QVRLQCLVSSGRFVVPFRKINEAFEESMGVVEFDTVALGGEILLEVEGIYTCIGLSLVETFFHKKQQPLGIPGIVGPSAAEVRGGEELADIREPAERVSLDL---EAAWKK-AGPVCARKYVEEVTLRTSHQRES-SRQTSNNQRYFDEWARRERLEESPGRYCKPHSAPHFGEKGWTWAGYSERIRREQETKKAGEALKVDEE 597
            +VRLQC+ S G  VVP +KI +   ESMGVVEF TVALGGEILLE EGIYTCIGLSL+ETF+H +QQ           A  V G     ++R P    + +L    AAW   AG +CA KY  E T R S Q  S S  T+  Q+YFDEWARRERLE+S GRYC+PH  P +GE GWTWA +SER+ RE+      EA + +EE
Sbjct:   71 EVRLQCVASRGHVVVPAKKIGKDMSESMGVVEFHTVALGGEILLEAEGIYTCIGLSLIETFYHDEQQL---------QAPVVPGRHNKDEVRIPHTMAAAELAPLRAAWDDGAGTLCAEKYSSEATRRGSLQAMSPSSTTAQEQKYFDEWARRERLEDSVGRYCRPHRPPRWGEPGWTWADHSERVLRER-----AEATRTEEE 260
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BLAST of mRNA_H-elongata_contig8140.15802.1 vs. uniprot
Match: D7G308_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G308_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.050e-28
Identity = 77/160 (48.12%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:  148 YTCIGLSLVETFFHKKQQPLGIPGIVGPSAAEVRGGEELADIREPAERVSL-DLEAAWKK-AGPVCARKYVEEVTLRTSHQRES-SRQTSNNQRYFDEWARRERLEESPGRYCKPHSAPHFGEKGWTWAGYSERIRREQETKKAGEALKVDEEKSKAQYA 618
            YTCIGLSL+ETF+H +QQ L  P + G      R  ++ A +        L  L AAW   AG +CA KY  E T R S Q  S S  T+ +Q+YFDEWARRERLE+S GRYC+PH  P +GE GWTWA +SER+ RE    +A    K +E K++ Q A
Sbjct:  152 YTCIGLSLIETFYHDEQQ-LQAPVVPG------RHNKDEARLPHTMAAAELAPLRAAWDDGAGALCAEKYSSEATRRGSLQAVSTSSTTAQDQKYFDEWARRERLEDSAGRYCRPHRPPRWGEPGWTWADHSERVLRE----RAEATRKEEENKARRQEA 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8140.15802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD78_9PHAE4.070e-5052.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G308_ECTSI7.050e-2848.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8140contigH-elongata_contig8140:8448..9550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004160.1
Exons3
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8140.15802.1prot_H-elongata_contig8140.15802.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8140 8448..9550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.6521845-CDS-H-elongata_contig8140:8447..86821622931221.6521845-CDS-H-elongata_contig8140:8447..8682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 8448..8682 -
1691679747.8179195-CDS-H-elongata_contig8140:8447..86821691679747.8179195-CDS-H-elongata_contig8140:8447..8682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 8448..8682 -
1622931221.671491-CDS-H-elongata_contig8140:8892..91651622931221.671491-CDS-H-elongata_contig8140:8892..9165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 8893..9165 -
1691679747.8343494-CDS-H-elongata_contig8140:8892..91651691679747.8343494-CDS-H-elongata_contig8140:8892..9165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 8893..9165 -
1622931221.6830082-CDS-H-elongata_contig8140:9404..95501622931221.6830082-CDS-H-elongata_contig8140:9404..9550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 9405..9550 -
1691679747.8452375-CDS-H-elongata_contig8140:9404..95501691679747.8452375-CDS-H-elongata_contig8140:9404..9550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8140 9405..9550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8140.15802.1

>prot_H-elongata_contig8140.15802.1 ID=prot_H-elongata_contig8140.15802.1|Name=mRNA_H-elongata_contig8140.15802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
QVRLQCLVSSGRFVVPFRKINEAFEESMGVVEFDTVALGGEILLEVEGIY
TCIGLSLVETFFHKKQQPLGIPGIVGPSAAEVRGGEELADIREPAERVSL
DLEAAWKKAGPVCARKYVEEVTLRTSHQRESSRQTSNNQRYFDEWARRER
LEESPGRYCKPHSAPHFGEKGWTWAGYSERIRREQETKKAGEALKVDEEK
SKAQYAVMKVGYVRTAY*
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mRNA from alignment at H-elongata_contig8140:8448..9550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8140.15802.1 ID=mRNA_H-elongata_contig8140.15802.1|Name=mRNA_H-elongata_contig8140.15802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig8140:8448..9550- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGGCTACAGTGCCTCGTCTCCAGTGGGCGGTTTGTGGTCCCCTT
CCGGAAGATCAACGAGGCCTTCGAAGAGTCCATGGGGGTGGTGGAATTCG
ACACTGTGGCGCTCGGCGGCGAGATCCTGTTAGAAGTGGAGGGCATGTGC
GTCCGAAACTTTCATTTTTTCTTCTCATGGTTCGTGGCGCGTTATCATAT
TTTTGTGATATCGTGATTAGTGTCGTGGCGAGCGCTTTCATGTCAGACAG
TAGGCGAAGGAGGACCAAAGCCTCTTGGATTGCCTGAGTTTTGGTGAAAT
ATTATCGCCCGATTCTCTTCGTTTTTGATCTCTTCCTGTTATCGCCGCCC
TCCACAATGATCGATCGACCCGCATCTTGCCGCAGCTATACGTGCATAGG
CTTGTCCCTGGTGGAAACATTTTTCCACAAAAAACAGCAGCCTCTAGGCA
TCCCGGGCATCGTCGGGCCATCCGCTGCCGAAGTGAGAGGTGGGGAAGAA
CTTGCAGATATTAGAGAGCCTGCAGAACGGGTGTCTTTGGATTTGGAGGC
GGCGTGGAAAAAAGCGGGGCCCGTTTGCGCAAGAAAATATGTGGAGGAGG
TGACCCTCAGAACCTCGCATCAGAGGGAGTCTTCCCGACAAACCTCCAAC
AATCAGAGGTGGGGACAAGGGGGAAATTAGGAGGTGGTATTTAGTCGGGT
GGTCGAGATTTCCCCCGCTTGTGATGTTTGAAATTTTATTATCGCCTGAG
TGTTGTTGGCAAGGTGGAAGGTCTAGTTGTGAAAAATATATTGGAGGCAA
TTGATAGCGATGCAACAGACAGCGGAGCCTAACGGTGTATGTTTGGCGAT
GAACGTTGAATTTCGTAGATATTTTGATGAATGGGCGCGGAGGGAGCGAC
TCGAGGAGTCCCCCGGGCGATACTGCAAGCCTCACAGCGCACCACACTTC
GGGGAGAAAGGCTGGACATGGGCTGGTTACTCAGAACGAATACGACGGGA
GCAGGAAACGAAGAAAGCCGGAGAGGCCTTAAAGGTTGACGAGGAGAAAA
GTAAAGCACAATACGCAGTTATGAAGGTGGGCTATGTACGGACAGCTTAT
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig8140:8448..9550-

>mRNA_H-elongata_contig8140.15802.1 ID=mRNA_H-elongata_contig8140.15802.1|Name=mRNA_H-elongata_contig8140.15802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig8140:8448..9550- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGGCTACAGTGCCTCGTCTCCAGTGGGCGGTTTGTGGTCCCCTT
CCGGAAGATCAACGAGGCCTTCGAAGAGTCCATGGGGGTGGTGGAATTCG
ACACTGTGGCGCTCGGCGGCGAGATCCTGTTAGAAGTGGAGGGCATCAGG
TTCGGCTACAGTGCCTCGTCTCCAGTGGGCGGTTTGTGGTCCCCTTCCGG
AAGATCAACGAGGCCTTCGAAGAGTCCATGGGGGTGGTGGAATTCGACAC
TGTGGCGCTCGGCGGCGAGATCCTGTTAGAAGTGGAGGGCATCTATACGT
GCATAGGCTTGTCCCTGGTGGAAACATTTTTCCACAAAAAACAGCAGCCT
CTAGGCATCCCGGGCATCGTCGGGCCATCCGCTGCCGAAGTGAGAGGTGG
GGAAGAACTTGCAGATATTAGAGAGCCTGCAGAACGGGTGTCTTTGGATT
TGGAGGCGGCGTGGAAAAAAGCGGGGCCCGTTTGCGCAAGAAAATATGTG
GAGGAGGTGACCCTCAGAACCTCGCATCAGAGGGAGTCTTCCCGACAAAC
CTCCAACAATCAGAGCTATACGTGCATAGGCTTGTCCCTGGTGGAAACAT
TTTTCCACAAAAAACAGCAGCCTCTAGGCATCCCGGGCATCGTCGGGCCA
TCCGCTGCCGAAGTGAGAGGTGGGGAAGAACTTGCAGATATTAGAGAGCC
TGCAGAACGGGTGTCTTTGGATTTGGAGGCGGCGTGGAAAAAAGCGGGGC
CCGTTTGCGCAAGAAAATATGTGGAGGAGGTGACCCTCAGAACCTCGCAT
CAGAGGGAGTCTTCCCGACAAACCTCCAACAATCAGAGATATTTTGATGA
ATGGGCGCGGAGGGAGCGACTCGAGGAGTCCCCCGGGCGATACTGCAAGC
CTCACAGCGCACCACACTTCGGGGAGAAAGGCTGGACATGGGCTGGTTAC
TCAGAACGAATACGACGGGAGCAGGAAACGAAGAAAGCCGGAGAGGCCTT
AAAGGTTGACGAGGAGAAAAGTAAAGCACAATACGCAGTTATGAAGGTGG
GCTATGTACGGACAGCTTATTAGATATTTTGATGAATGGGCGCGGAGGGA
GCGACTCGAGGAGTCCCCCGGGCGATACTGCAAGCCTCACAGCGCACCAC
ACTTCGGGGAGAAAGGCTGGACATGGGCTGGTTACTCAGAACGAATACGA
CGGGAGCAGGAAACGAAGAAAGCCGGAGAGGCCTTAAAGGTTGACGAGGA
GAAAAGTAAAGCACAATACGCAGTTATGAAGGTGGGCTATGTACGGACAG
CTTATTAG
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