mRNA_H-elongata_contig81361.15796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81361.15796.1
Unique NamemRNA_H-elongata_contig81361.15796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A6H5JAS9_9PHAE (Glyco_18 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAS9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.930e-25
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRG-----LSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPW+G GYDFARTFRSK TY+SPVWYQLRG      S+ G +  PSF L GGHDFDEAW++DVR
Sbjct:  144 YVTPWHGEGYDFARTFRSKLTYVSPVWYQLRGGRERDPSQGGGNDSPSFHLAGGHDFDEAWVSDVR 209
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A7J7Q029_9CHLO (Glycoside hydrolase superfamily n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q029_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 1.900e-21
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN  GYD A+ FR+KFT+ISPVWYQLRG +   DSG     LTGGHD D+ WIADVR
Sbjct:   70 YVTPWNNHGYDVAKKFRAKFTHISPVWYQLRGATEGSDSG---LQLTGGHDVDQGWIADVR 127
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A7S2V5N8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.260e-19
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            +ITPWNG+GYD A+TFR+KFTYI PVWYQ+R   R+ D G     LTG HD DE W+++VR
Sbjct:  108 FITPWNGKGYDQAKTFRAKFTYICPVWYQIR---RAKDGG---LELTGKHDADEGWLSEVR 162
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A024TWG8_9STRA (GH18 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWG8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.880e-18
Identity = 40/61 (65.57%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN  GYD A+ FRSKFTYISPVWYQ+R      D GKP   LTGGHD D  WIA VR
Sbjct:   80 YVTPWNNHGYDTAKLFRSKFTYISPVWYQIR----HSDHGKPI--LTGGHDVDVGWIAAVR 134
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A024TWC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWC5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.550e-18
Identity = 40/61 (65.57%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN  GYD A+ FRSKFTYISPVWYQ+R      D GKP   LTGGHD D  WIA VR
Sbjct:   80 YVTPWNNHGYDTAKLFRSKFTYISPVWYQIR----HSDHGKPI--LTGGHDVDVGWIAAVR 134
[Close]
BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A3L6VHB5_9STRA (GH18 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VHB5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.720e-17
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN  GY+ A+ FRSKFTYI+PVWYQ+R      D  KP+  LTGGHD D  W+A VR
Sbjct:   44 YVTPWNNHGYNTAKLFRSKFTYIAPVWYQIR----HNDKRKPA--LTGGHDVDLEWMAAVR 98
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A8K1FK63_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK63_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 3.290e-16
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN RGYD+A+ FR KFTYI+PVW Q+R      DS   +  +TG HD D+ W+ADVR
Sbjct:  108 YVTPWNNRGYDWAKQFRRKFTYIAPVWLQIRE-----DSKTKTPIITGSHDIDDQWVADVR 163
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A8C5MSX9_9ANUR (Chitinase domain containing 1 n=3 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MSX9_9ANUR)

HSP 1 Score: 79.7 bits (195), Expect = 4.560e-16
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            YITPWNG GYD A+TF +KFT +SPVW Q+R        G+ S+ +TG HD D+ WI D+R
Sbjct:   84 YITPWNGHGYDMAKTFAAKFTLVSPVWLQIRR------KGRESYQVTGLHDVDQGWIKDIR 138
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BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A485LRY6_9STRA (Aste57867_24620 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRY6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.600e-16
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWN  GYD A+ FR KFTYI+PVWYQ+R      D  +PS  LTGGHD D  WI+ VR
Sbjct:   87 YVTPWNNHGYDTAKLFRHKFTYIAPVWYQIR----HDDKHQPS--LTGGHDVDAGWISAVR 141
[Close]
BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Match: A0A176WBK3_MARPO (GH18 domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WBK3_MARPO)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-15
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGHDFDEAWIADVR 183
            Y+TPWNG+GYD A+ FRSKFT++SPVWYQL+      +SG     L G HD D+ WI+DVR
Sbjct:  130 YVTPWNGKGYDMAKLFRSKFTHVSPVWYQLK----RDNSG---LHLHGRHDVDQKWISDVR 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81361.15796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAS9_9PHAE2.930e-2568.18Glyco_18 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7J7Q029_9CHLO1.900e-2165.57Glycoside hydrolase superfamily n=1 Tax=Scenedesmu... [more]
A0A7S2V5N8_9STRA9.260e-1960.66Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A024TWG8_9STRA2.880e-1865.57GH18 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A024TWC5_9STRA3.550e-1865.57Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3L6VHB5_9STRA7.720e-1759.02GH18 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8K1FK63_PYTOL3.290e-1655.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8C5MSX9_9ANUR4.560e-1654.10Chitinase domain containing 1 n=3 Tax=Leptobrachiu... [more]
A0A485LRY6_9STRA5.600e-1659.02Aste57867_24620 protein n=1 Tax=Aphanomyces stella... [more]
A0A176WBK3_MARPO1.040e-1557.38GH18 domain-containing protein n=3 Tax=Marchantia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81361contigH-elongata_contig81361:636..818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7FL31
Preferred nameCHID1
KEGG rclassRC02795
KEGG koko:K03046,ko:K17525
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.chitinase activity
EggNOG OGsKOG2091@1,KOG2091@2759
EC2.7.7.6
COG Functional cat.P
CAZyGH18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400,ko04091
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.0004263-CDS-H-elongata_contig81361:635..8181622931221.0004263-CDS-H-elongata_contig81361:635..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81361 636..818 -
1691679747.5591493-CDS-H-elongata_contig81361:635..8181691679747.5591493-CDS-H-elongata_contig81361:635..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81361 636..818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81361.15796.1prot_H-elongata_contig81361.15796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81361 636..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81361.15796.1

>prot_H-elongata_contig81361.15796.1 ID=prot_H-elongata_contig81361.15796.1|Name=mRNA_H-elongata_contig81361.15796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
YITPWNGRGYDFARTFRSKFTYISPVWYQLRGLSRSGDSGKPSFSLTGGH
DFDEAWIADVR
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mRNA from alignment at H-elongata_contig81361:636..818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81361.15796.1 ID=mRNA_H-elongata_contig81361.15796.1|Name=mRNA_H-elongata_contig81361.15796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig81361:636..818- (Himanthalia elongata Himel1 dioecious)
TATATAACGCCCTGGAACGGGAGAGGGTACGATTTCGCCCGTACGTTCCG
CTCGAAGTTCACCTACATCAGCCCGGTGTGGTACCAGCTTCGAGGGCTTT
CCAGGAGCGGTGATAGCGGCAAGCCCTCTTTCTCGTTGACGGGGGGCCAT
GATTTTGACGAGGCTTGGATTGCCGACGTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig81361:636..818-

>mRNA_H-elongata_contig81361.15796.1 ID=mRNA_H-elongata_contig81361.15796.1|Name=mRNA_H-elongata_contig81361.15796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig81361:636..818- (Himanthalia elongata Himel1 dioecious)
TATATAACGCCCTGGAACGGGAGAGGGTACGATTTCGCCCGTACGTTCCG
CTCGAAGTTCACCTACATCAGCCCGGTGTGGTACCAGCTTCGAGGGCTTT
CCAGGAGCGGTGATAGCGGCAAGCCCTCTTTCTCGTTGACGGGGGGCCAT
GATTTTGACGAGGCTTGGATTGCCGACGTGCGGTATATAACGCCCTGGAA
CGGGAGAGGGTACGATTTCGCCCGTACGTTCCGCTCGAAGTTCACCTACA
TCAGCCCGGTGTGGTACCAGCTTCGAGGGCTTTCCAGGAGCGGTGATAGC
GGCAAGCCCTCTTTCTCGTTGACGGGGGGCCATGATTTTGACGAGGCTTG
GATTGCCGACGTGCGG
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