mRNA_H-elongata_contig81304.15790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81304.15790.1
Unique NamemRNA_H-elongata_contig81304.15790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81304.15790.1 vs. uniprot
Match: D8LGE4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE4_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.370e-39
Identity = 80/165 (48.48%), Postives = 116/165 (70.30%), Query Frame = 1 
Query:   13 ADADCPDDRANGWKEDNDKAGTDLRWHDHVLRAETLLLTQQYKDSMERLEDRSDEEARGVLKGLVEEYRAVNESLAAFLARMSNANQGLVEMLQKSEDGRSALMMRRAAEMVVKALANAEEEVHSLKAELKEVGGQRDNYKTLLAKTNSEMELAQAYAQMGRATG 507
            AD D P  +     E   +  TDLRW  H L+   + L+ +++D+   LE + D EAR  +  L +E++ +N+ LAA LAR+S  N+ LVE+L+KSEDG++ALMMR+AAE++VK LANAEEEV SLKA+  E+  QRD+YK LLA+TNSE+++++A+AQ+  A G
Sbjct:    2 ADKDHPQGQTPAGGEGLVQESTDLRWEGHRLQGSHIELSLRFEDTTRTLESKGDREARAAMLRLAKEFKQLNDVLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLARTNSELDVSRAHAQISEALG 166
[Close]
BLAST of mRNA_H-elongata_contig81304.15790.1 vs. uniprot
Match: A0A6H5KZE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE5_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.530e-37
Identity = 80/165 (48.48%), Postives = 117/165 (70.91%), Query Frame = 1 
Query:   13 ADADCPDDRANGWKEDNDKAGTDLRWHDHVLRAETLLLTQQYKDSMERLEDRSDEEARGVLKGLVEEYRAVNESLAAFLARMSNANQGLVEMLQKSEDGRSALMMRRAAEMVVKALANAEEEVHSLKAELKEVGGQRDNYKTLLAKTNSEMELAQAYAQMGRATG 507
            AD D P  + +   E   +  TDLRW  H L+   + L+ +++D+ + LE + D EAR  +  L +E++ +N+ LAA LAR+S  N+ LVE+L+KSEDG++ALMMR+AAE++VK LANAEEEV SLKA+  E+  QRD+YK LLA TNSE+++++A+AQ+  A G
Sbjct:    2 ADEDHPQGQTSAGGEGLVQESTDLRWEGHRLQGAHIELSLRFEDTTQTLESKGDREARAAMLRLAKEFKQLNDGLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLATTNSELDISRAHAQISEALG 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81304.15790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE4_ECTSI2.370e-3948.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE5_9PHAE1.530e-3748.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81304contigH-elongata_contig81304:1111..1951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003740.1
Exons2
Model size507
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.3334193-CDS-H-elongata_contig81304:1110..12631622931220.3334193-CDS-H-elongata_contig81304:1110..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81304 1111..1263 -
1691679747.2292013-CDS-H-elongata_contig81304:1110..12631691679747.2292013-CDS-H-elongata_contig81304:1110..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81304 1111..1263 -
1622931220.3471222-CDS-H-elongata_contig81304:1597..19511622931220.3471222-CDS-H-elongata_contig81304:1597..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81304 1598..1951 -
1691679747.2369788-CDS-H-elongata_contig81304:1597..19511691679747.2369788-CDS-H-elongata_contig81304:1597..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81304 1598..1951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81304.15790.1prot_H-elongata_contig81304.15790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81304 1111..1951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81304.15790.1

>prot_H-elongata_contig81304.15790.1 ID=prot_H-elongata_contig81304.15790.1|Name=mRNA_H-elongata_contig81304.15790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MLYQADADCPDDRANGWKEDNDKAGTDLRWHDHVLRAETLLLTQQYKDSM
ERLEDRSDEEARGVLKGLVEEYRAVNESLAAFLARMSNANQGLVEMLQKS
EDGRSALMMRRAAEMVVKALANAEEEVHSLKAELKEVGGQRDNYKTLLAK
TNSEMELAQAYAQMGRATG
back to top

mRNA from alignment at H-elongata_contig81304:1111..1951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81304.15790.1 ID=mRNA_H-elongata_contig81304.15790.1|Name=mRNA_H-elongata_contig81304.15790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=841bp|location=Sequence derived from alignment at H-elongata_contig81304:1111..1951- (Himanthalia elongata Himel1 dioecious)
ATGCTGTACCAGGCGGATGCAGACTGTCCCGACGATCGGGCAAACGGGTG
GAAGGAGGACAACGATAAGGCCGGGACAGATCTGAGGTGGCATGACCATG
TCCTGCGCGCGGAAACGCTCCTCCTCACCCAGCAATACAAGGACTCGATG
GAGAGGCTCGAGGACAGGAGCGATGAAGAAGCGCGCGGGGTGCTGAAGGG
CCTTGTCGAGGAATACAGAGCAGTGAATGAGTCGCTAGCGGCGTTCCTTG
CGCGGATGTCGAACGCCAACCAAGGCTTGGTGGAGATGCTGCAGAAGAGC
GAAGACGGGCGGTCGGCACTGATGATGCGCAGAGCCGCCGAGATGGTGGT
AAAGGTGCGGGGCGCTCCGTCTATACTTTTGCTGTGCGTGTCTTTGCGTG
GCTCTCGGATGGGGCACGCGATGCGGGACCGGACCGCCAGAGTGGTTTTG
TGCCTTTGCCCATCATAAGGGTGGTTGTAACAAGGGGTCTCGTGGGCACT
CCGTGTACACGCGCGGCGCTAGAGTCACTTACATAATATATTTCATAGTG
AAAGACCGCAGCGATTATGTAAAATCTGCCTTTTTATGTATTTAATTAGT
TAATGTTTCTGTTATTCGTATGCGGTACACGACCCTGTCAACAACACGTG
TTTTGTTTGTGTAAACACGCGGGGTTCCCATCGTGCAGGCGTTAGCGAAC
GCAGAGGAGGAGGTACATTCCCTCAAAGCCGAACTGAAGGAAGTGGGAGG
ACAACGCGACAACTACAAGACACTCCTTGCGAAGACCAACTCAGAGATGG
AACTCGCTCAGGCGTACGCCCAAATGGGCAGGGCGACGGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81304:1111..1951-

>mRNA_H-elongata_contig81304.15790.1 ID=mRNA_H-elongata_contig81304.15790.1|Name=mRNA_H-elongata_contig81304.15790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig81304:1111..1951- (Himanthalia elongata Himel1 dioecious)
ATGCTGTACCAGGCGGATGCAGACTGTCCCGACGATCGGGCAAACGGGTG
GAAGGAGGACAACGATAAGGCCGGGACAGATCTGAGGTGGCATGACCATG
TCCTGCGCGCGGAAACGCTCCTCCTCACCCAGCAATACAAGGACTCGATG
GAGAGGCTCGAGGACAGGAGCGATGAAGAAGCGCGCGGGGTGCTGAAGGG
CCTTGTCGAGGAATACAGAGCAGTGAATGAGTCGCTAGCGGCGTTCCTTG
CGCGGATGTCGAACGCCAACCAAGGCTTGGTGGAGATGCTGCAGAAGAGC
GAAGACGGGCGGTCGGCACTGATGATGCGCAGAGCCGCCGAGATGGTGGT
AAAGATGCTGTACCAGGCGGATGCAGACTGTCCCGACGATCGGGCAAACG
GGTGGAAGGAGGACAACGATAAGGCCGGGACAGATCTGAGGTGGCATGAC
CATGTCCTGCGCGCGGAAACGCTCCTCCTCACCCAGCAATACAAGGACTC
GATGGAGAGGCTCGAGGACAGGAGCGATGAAGAAGCGCGCGGGGTGCTGA
AGGGCCTTGTCGAGGAATACAGAGCAGTGAATGAGTCGCTAGCGGCGTTC
CTTGCGCGGATGTCGAACGCCAACCAAGGCTTGGTGGAGATGCTGCAGAA
GAGCGAAGACGGGCGGTCGGCACTGATGATGCGCAGAGCCGCCGAGATGG
TGGTAAAGGCGTTAGCGAACGCAGAGGAGGAGGTACATTCCCTCAAAGCC
GAACTGAAGGAAGTGGGAGGACAACGCGACAACTACAAGACACTCCTTGC
GAAGACCAACTCAGAGATGGAACTCGCTCAGGCGTACGCCCAAATGGGCA
GGGCGACGGGGGCGTTAGCGAACGCAGAGGAGGAGGTACATTCCCTCAAA
GCCGAACTGAAGGAAGTGGGAGGACAACGCGACAACTACAAGACACTCCT
TGCGAAGACCAACTCAGAGATGGAACTCGCTCAGGCGTACGCCCAAATGG
GCAGGGCGACGGGG
back to top