mRNA_H-elongata_contig81233.15783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81233.15783.1
Unique NamemRNA_H-elongata_contig81233.15783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: D7FV05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV05_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.170e-16
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 2 
Query:  500 EVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCFR 664
            +V+ +V   L + GG EAA+ACAEVI  AA  WRRFEGAYRDDISC+VLRLPCF+
Sbjct:   26 QVIEIVQRGLLRGGGCEAAEACAEVIGAAATRWRRFEGAYRDDISCIVLRLPCFQ 80
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A835YWR4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.530e-15
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:  416 QVTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCF 661
            +V    +   D F+V+ASDGVWEF+ + +V A  H  L K G   A  AC  +I+ AA  WR  EG YRDDI+  +L LPCF
Sbjct:  156 EVLEHTIQPTDRFMVMASDGVWEFLTSTDVAAFAHEHLAKGGNAAAKSACEALIARAANMWRAHEGQYRDDITAQILMLPCF 237
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: D7FIB7_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIB7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.130e-13
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:  434 VDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCF 661
            V  GD F+VLASDGVWEF+K++E + +V+  L++ G  +A     ++I  AA  WR  EG YRDDI+ +V+RLPCF
Sbjct:  432 VQAGDKFIVLASDGVWEFVKSQEAIDIVNTSLEE-GTMKATQ---DLIEAAATKWREVEGDYRDDITAVVIRLPCF 503
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A7R9UVE7_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UVE7_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 9.390e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  416 QVTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCFR 664
            +V    +   D F+++ASDGVWEF+ + E VA+    + + G  EA   C ++I  AAA WR  EG YRDDI+ +V + PC +
Sbjct:   37 EVMEHELGRDDLFLIMASDGVWEFISSDEAVAICAPIVAQAGATEA---CTKLIERAAAKWREEEGDYRDDITAIVCKFPCLQ 116
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A7S3BCV2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BCV2_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.270e-12
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:  425 VRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCFRGE 670
            V    EGDAF+++ASDGVWEF+ ++E   +V       G   A D+C  ++  AA  WRRFEG+YRDDI+ +V+ LP    E
Sbjct:  306 VAPATEGDAFIIVASDGVWEFIPSQEACEIV------AGFSNATDSCTALVKEAADRWRRFEGSYRDDITAIVVYLPFLEAE 381
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A6U3Z835_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Z835_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.820e-12
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:  419 VTVRRVDEG-DAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGG--QEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRL 652
            V+V  +DE  D FV++A+DGVWEF+ +++ V +V   L    G  Q+A++AC  +I  A A W  FEG YRDDI+ +V+RL
Sbjct:   96 VSVHTIDEELDEFVIIATDGVWEFISSEDAVDIVGRCLYGTDGEKQDASEACEALIKAATAKWHEFEGNYRDDITAMVIRL 176
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A7S0AHM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AHM6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.520e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  419 VTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLP 655
            +T   V + D F++LASDGVWEF+ ++E V +V + L+K  G  A++A  ++I  A   W++ EG YRDDI+ +V+RLP
Sbjct:   31 ITHHVVTDQDEFLILASDGVWEFISSEEAVRMVGDCLEK--GLTASEASIQLIRHAIKLWKKIEGDYRDDITAIVVRLP 107
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BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A7S3L068_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L068_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.050e-12
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  419 VTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLP 655
            VT R ++  D F++LASDGVWEF+ +++ V +V   L++RG  +A   C  +I  AAA W   EG YRDDI+ +V+RLP
Sbjct:  449 VTERVLEPQDDFMILASDGVWEFLSSQDAVNIVGEHLEERGSTKA---CQALIEAAAARWHDEEGEYRDDITAIVVRLP 524
[Close]
BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: K0RB05_THAOC (PPM-type phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB05_THAOC)

HSP 1 Score: 75.5 bits (184), Expect = 8.340e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 2 
Query:  419 VTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLPCFRGEGGG 679
            V   R+  GD FV++A+DGVWEF+ +   V +V +RL+K  G+ A+ AC  +I  A   WR  EG YRDDI+ +V+++     E GG
Sbjct:  469 VETHRIVPGDEFVIMATDGVWEFIDSDAAVEIVADRLRK--GEGASVACEALIDAATRRWREVEGCYRDDITAIVIQMGDLWAENGG 553
[Close]
BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Match: A0A7S3EWB1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EWB1_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.670e-11
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  416 QVTVRRVDEGDAFVVLASDGVWEFMKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISCLVLRLP 655
            +V  R +   D F++LASDGVWEF+ N++V+ +V      +G  E  DAC  +   A   WR  EG YRDDI+  V+ LP
Sbjct:  132 EVRQRTLTAEDEFLILASDGVWEFLSNEKVLKIVEKSWNAKGRAE--DACKSICVQAVLQWREHEGDYRDDITAFVVHLP 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81233.15783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV05_ECTSI2.170e-1667.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWR4_9STRA2.530e-1546.34Phosphatase 2C-like domain-containing protein n=1 ... [more]
D7FIB7_ECTSI7.130e-1350.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A7R9UVE7_DIALT9.390e-1340.96Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S3BCV2_9EUKA1.270e-1245.12Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A6U3Z835_9STRA2.820e-1245.68Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0AHM6_9STRA3.520e-1244.30Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S3L068_9STRA6.050e-1246.84Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K0RB05_THAOC8.340e-1242.53PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3EWB1_9EUKA1.670e-1142.50Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81233contigH-elongata_contig81233:366..1968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FIB7
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein phosphatase 2C
Ec32 orthologEc-sdr_f_000200.1
Exons2
Model size807
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81233.15783.1prot_H-elongata_contig81233.15783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81233 703..1936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931219.3500948-UTR-H-elongata_contig81233:365..7021622931219.3500948-UTR-H-elongata_contig81233:365..702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81233 366..702 +
1691679746.737562-UTR-H-elongata_contig81233:365..7021691679746.737562-UTR-H-elongata_contig81233:365..702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81233 366..702 +
1622931219.3962374-UTR-H-elongata_contig81233:1936..19681622931219.3962374-UTR-H-elongata_contig81233:1936..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81233 1937..1968 +
1691679746.78268-UTR-H-elongata_contig81233:1936..19681691679746.78268-UTR-H-elongata_contig81233:1936..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81233 1937..1968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931219.3658867-CDS-H-elongata_contig81233:702..8671622931219.3658867-CDS-H-elongata_contig81233:702..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81233 703..867 +
1691679746.75198-CDS-H-elongata_contig81233:702..8671691679746.75198-CDS-H-elongata_contig81233:702..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81233 703..867 +
1622931219.3794365-CDS-H-elongata_contig81233:1663..19361622931219.3794365-CDS-H-elongata_contig81233:1663..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81233 1664..1936 +
1691679746.7691402-CDS-H-elongata_contig81233:1663..19361691679746.7691402-CDS-H-elongata_contig81233:1663..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81233 1664..1936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81233.15783.1

>prot_H-elongata_contig81233.15783.1 ID=prot_H-elongata_contig81233.15783.1|Name=mRNA_H-elongata_contig81233.15783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MTESIEIYLSKSIVYIYCFCCCFLIGQVTVRRVDEGDAFVVLASDGVWEF
MKNKEVVAVVHNRLKKRGGQEAADACAEVISMAAAYWRRFEGAYRDDISC
LVLRLPCFRGEGGGAAPLGTPESVPGVGVGEQGKGKDGGLRTSLA*
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mRNA from alignment at H-elongata_contig81233:366..1968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81233.15783.1 ID=mRNA_H-elongata_contig81233.15783.1|Name=mRNA_H-elongata_contig81233.15783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1603bp|location=Sequence derived from alignment at H-elongata_contig81233:366..1968+ (Himanthalia elongata Himel1 dioecious)
TTCAGTTTGATGGAGGCGTTACGTTACGGACCAGTAACTCAGTGCGGGAG
GTATCTTAACGAGACCGTCACAGCGAAGGGCTTTATTTTTTTTAATTGTT
TTTAGAAAAATAAGAACAATGTTCACCGCAGTCTCTTTGTCTCTGTATGT
CTCTCCCTCTAGATATACAATGTCTCGTGTATTAAATTATTGGGCATAGT
CTTCTCTCTGTCTTCGTATACATCTTATTTATCGGAGGATGACGAGGACA
AAAGGGCAGGACCGTATCAAAGGACCAGACCCTTCAACGGGCGGATTCAG
CTCAAATTGAATGAAATGAGTTAAATATGGCAAAAATATGACAGAATCTA
TCGAAATCTACCTATCGAAATCTATAGTATACATTTATTGTTTTTGTTGT
TGTTTTTTAATCGGCCAGGTGACAGTGAGGAGGGTAGACGAGGGAGACGC
TTTCGTTGTGCTGGCGTCCGACGGAGTGTGGGAGTTCATGAAGAATAAGG
AGGCGAGTTTATTGTCGGGCTCGATGGTGTTCCCCCCCTGGTACGAATAA
TTAAGGCAAAAAAGAGGAAGAGTCGAGGTCGAACGTGTGTGCTGATCAGG
TCCGGAAAAAGGGATATATATATATATATATATATAGAGAGAGAGAGAGA
GAGAGATAGGCCACGTATTGTAGGAACTTAATACCACCGAAGAGCTTGTA
GTATTAAGTGTGGGCAAGATAAAGCCTAAACTGTCGGCACAAAGATTTGA
TGAATGATTGTTGAAGGGTTGCCTGCCGTAGGGGGCGGAATATAGCATAC
CATCGTCATGCCATTGTCATTCCCCGAGGACTAACGCGTGGTTAATGGTC
TAACAGCTAAGTCATGGGTCTAACAGCTTGAGAAGCTTGAGAAGCTTAAG
AAGGCCCTCGTTGAAAAAAATCGGGGATATCATCGTCAGTCCCCCATCCT
TTGGAGGACGCGTGGTCAATGATCCACAAGACTTGTGTTCGCCCCCCACC
CCTTCCCGCCCCTTCCTCCCCCTAATATATAAGCTAGAAATAACGCCTCT
TGGATTGAAACATTTTCTACCCGAAATGCCCGGAGATTGTCACAATCGGG
TCGTGATATATAGCAGGGATATAGCAGTGATTATGACGTAATAGGATGTA
GACCTGTCCCCGTGACCGACGGTGTTACCTGCTAACTCTTGAGTTTTGAC
TCTGGGCGCCTTTTTTTTCTCCTATTTATATACCGTATTCGTTTCCTACA
AAATACATGAGTGTATGTTTGACTGTTGGAAGATTTTCTGTTGATCAGGT
GGTGGCGGTGGTGCACAACCGCCTTAAGAAGAGAGGGGGACAGGAGGCCG
CCGACGCTTGCGCTGAAGTGATCTCGATGGCGGCCGCGTACTGGAGGCGG
TTCGAGGGGGCCTACCGGGACGACATAAGCTGCTTGGTGCTAAGGCTGCC
GTGCTTCCGCGGGGAGGGGGGCGGAGCCGCCCCCTTGGGGACGCCGGAAA
GCGTCCCCGGTGTTGGCGTTGGCGAGCAGGGGAAGGGGAAGGATGGCGGG
CTTCGGACCTCCCTTGCATAGTAACTAGCTTCCAACATCGAAGAACATGA
ATA
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Coding sequence (CDS) from alignment at H-elongata_contig81233:366..1968+

>mRNA_H-elongata_contig81233.15783.1 ID=mRNA_H-elongata_contig81233.15783.1|Name=mRNA_H-elongata_contig81233.15783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig81233:366..1968+ (Himanthalia elongata Himel1 dioecious)
ATGACAGAATCTATCGAAATCTACCTATCGAAATCTATAGTATACATTTA
TTGTTTTTGTTGTTGTTTTTTAATCGGCCAGGTGACAGTGAGGAGGGTAG
ACGAGGGAGACGCTTTCGTTGTGCTGGCGTCCGACGGAGTGTGGGAGTTC
ATGAAGAATAAGGAGATGACAGAATCTATCGAAATCTACCTATCGAAATC
TATAGTATACATTTATTGTTTTTGTTGTTGTTTTTTAATCGGCCAGGTGA
CAGTGAGGAGGGTAGACGAGGGAGACGCTTTCGTTGTGCTGGCGTCCGAC
GGAGTGTGGGAGTTCATGAAGAATAAGGAGGTGGTGGCGGTGGTGCACAA
CCGCCTTAAGAAGAGAGGGGGACAGGAGGCCGCCGACGCTTGCGCTGAAG
TGATCTCGATGGCGGCCGCGTACTGGAGGCGGTTCGAGGGGGCCTACCGG
GACGACATAAGCTGCTTGGTGCTAAGGCTGCCGTGCTTCCGCGGGGAGGG
GGGCGGAGCCGCCCCCTTGGGGACGCCGGAAAGCGTCCCCGGTGTTGGCG
TTGGCGAGCAGGGGAAGGGGAAGGATGGCGGGCTTCGGACCTCCCTTGCA
TAGGTGGTGGCGGTGGTGCACAACCGCCTTAAGAAGAGAGGGGGACAGGA
GGCCGCCGACGCTTGCGCTGAAGTGATCTCGATGGCGGCCGCGTACTGGA
GGCGGTTCGAGGGGGCCTACCGGGACGACATAAGCTGCTTGGTGCTAAGG
CTGCCGTGCTTCCGCGGGGAGGGGGGCGGAGCCGCCCCCTTGGGGACGCC
GGAAAGCGTCCCCGGTGTTGGCGTTGGCGAGCAGGGGAAGGGGAAGGATG
GCGGGCTTCGGACCTCCCTTGCATAG
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