mRNA_H-elongata_contig81222.15782.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81222.15782.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI) HSP 1 Score: 300 bits (769), Expect = 3.440e-84 Identity = 264/736 (35.87%), Postives = 357/736 (48.51%), Query Frame = 1
Query: 1 EASDGPKIEKIIAILEEWAAWERGLEEEAERSDVARSIKQAADQMAPRFATNISALQTRDHKICAEKKHLTKFIDDASTMRF--------RKMPKAVHLPDDAVRLHFATKQERRLSARSDSVARAGRQTLKAWARDQTMRRSS-KDITLDQDQVSVG----CKERSASQAR--RIISTNVKIGHCWKGE----KRTFAASRRSMHLTSTPTHSFALQKTSPSRRARQAGRLTAEPLRSLER----GDMSKGTRKVVTPQHSWKTYKKSPGRFGIPVGGWFEAGEEDTITALPTT------------RSPALIDCGRASPWARSPSRETAGGILVKHSFFYGTGGRTLPDRMFSREDWTGANRSFESAWMRKFRKEIERNPDWWIKPQQ--HYPVLGMRKAG-FRGSSQGLNKREVSGQNRPATDFTATHNEGGYARGQDAQKIALWDEVRSLLATGRCGND----GGGVGGG---EVATESFERNDGLSFGDRLRCTPLSQGAWLEEDSRRERFDLLSALPGSGIEDEIDSAAKEQSTGENSKHEAHGRGYILEPETRAESDAYGRSNTKSNDACGGREGFLKRW------------------NAGVVDRNR--------EGLRSVHDSILARLRGKIDSATREEIIMRAAEDARGALARDGVKIAAPRHALEVVASRASSGLRSSIAVPESIDYDKVEATLSLIELAARAAGPDAGRQMLRALECLEKMHQRVS 1995
+A D + + II+ILE+WAAWER LEE A+ S+ K+A +Q + ISA D + A ++K DD ++ R + + L +A+++ERR + D +ARA RQ LK WA DQT RRSS ++ TL + G ER+ R R ST+ + KG K + R+ + S P ++ S R R + P RS G + + +P++ W+ K P + P F+ E ++ P+T S +L+ GR S WARSPSRETAGGILVKH FFYG+ + P R + + A+ SFES WMR+FR+E++RNP+WW+ + H AG G ++G + R RP TH GG G +Q LW+EVR LLA GR D G G G E R D LSFGDRLR TPLSQGAWL + SA S ++A++ + E H L + A G + D+ GR L R AG DR+R L+S+H + LA+LRG+ID TREE+++RAAE+ARGALARD + +PR A V R S R + P++IDYD VEATLSLIELA RAAGPDAG+QML+ALE L+K+HQRVS
Sbjct: 67 DADDEDQRDAIISILEDWAAWERNLEEGADVSET----KKADEQAVVTGVSGISAASLVDTQNDARTSRVSKPNDDPASAAHSASGPSSKRGLRATFEAGNPNQLLLYASRRERRRAEIHDPIARARRQALKVWAADQTRRRSSAEESTLSERLKQQGRGSFSYERATVSVRSSRRSSTDATVDRNRKGGGGPLKNEWFRRRKPPYRASAP------REISAQRHVRNIAEIPPGPQRSTPTVPAAGLSPQEAGRKSSPRYPWRANMKEPEK--RPRRSAFDLLREGDVSMAPSTPRVPTTVLSSPSSSSSLVVAGRGSAWARSPSRETAGGILVKHCFFYGSSDKATPRRAAA--EAATASTSFESQWMRQFREEVQRNPNWWLSSDRFVHGRACASPAAGNVPGGAKGASGRSA----RPPFPTALTHRGGG---GMASQTTDLWNEVRLLLAAGRQNEDRHTGGSRRGPGHDHEKGDLKAARLDILSFGDRLRYTPLSQGAWLVGEGAT----ATSAATTSS------ASAEKSARNAMLSEEVH---VALATRDMVDVAAAGTDVEERQDSKAGRSDALSRVPSQSAADEIVSPIGNVRAEAGHDDRSRAVRGTSGCHDLQSIHAATLAKLRGEIDPFTREELVLRAAEEARGALARDRARNTSPRRASAGV-FRPSPKARKRDSTPDAIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQRVS 767
BLAST of mRNA_H-elongata_contig81222.15782.1 vs. uniprot
Match: A0A6H5L713_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L713_9PHAE) HSP 1 Score: 288 bits (736), Expect = 7.150e-80 Identity = 270/733 (36.83%), Postives = 360/733 (49.11%), Query Frame = 1
Query: 1 EASDGPKIEKIIAILEEWAAWERGLEEEAERSDVARSIKQAADQMAPRFATNISALQTRDHKICAEKKHLTKFIDD-ASTMRFRKMP------KAVHLPDDAVRLH-FATKQERRLSARSDSVARAGRQTLKAWARDQTMRRSSKDI-----TLDQDQVSVGCKERSASQAR--RIISTNVKIGHCWKGE----KRTFAASRRSMHLTSTPTHSFALQKTSPSRRARQAGRLTAEPLRSLE----RGDMSKGTRKVVTPQHSWKTYKKSPGRFGIPVGGWFEAGEEDTITALPTT------------RSPALIDCGRASPWARSPSRETAGGILVKHSFFYGTGGRTLPDRMFSREDWTGANRSFESAWMRKFRKEIERNPDWWIKPQQHYPVLGMRKAGFRGSSQGLNKREVSGQN-RPATDFTATHNEGGYARGQDAQKIALWDEVRSLLATGRCGND---GGGVGGGEVATESFE----RNDGLSFGDRLRCTPLSQGAWL-----------------EEDSRRERFDLLSALPGSGIEDEIDSAAKEQSTGENSKHEAHGRGYILEPETRAESDAYGRSNTK-SNDACGGREGFLKRWNAGVVDRNR-------EGLRSVHDSILARLRGKIDSATREEIIMRAAEDARGALARDGVKIAAPRHALEVVASRASSGLRSSIAVPESIDYDKVEATLSLIELAARAAGPDAGRQMLRALECLEKMHQRVS 1995
+A + + + II+ILE+WAAWER LEE A DV + K A ++ + ISA D A+ ++K IDD AS P +A ++ +L + +++ERR + R D +ARA R+ LK WA DQT RRSS + L Q ER+ AR R ST+ + KG K + R+ + TS P ++ S R R + RS G + RK +P+ W+ K P + P F+ +E ++ P+T S +L+ GR S WARSPSRETAGGILVKH FFYG+ + P R + + A+ SFES WMR+FRKE++RNP+WW+ + V G A + + SG++ RP TH GG G ++ LW+EVR LLA GR + GG G E E + R D LSFGDRLR TPLSQGAWL E S R D +D AA E +A GR DA R +K + D G + R AG DR++ L+++H + LA+LRG+ID TREE+++RAAE+ARGALARD + +PR A V R S R + ESIDYD VEATLSLIELA RAAGPDAG+QML+ALE L+K+HQRVS
Sbjct: 67 DADNEDQRDAIISILEDWAAWERNLEEGA---DVGETRK-ADEEAVVTGVSGISAASLVDTHNDAKTSCVSKPIDDPASEAHSATGPPSKQGLRATFEAENTNKLLLYTSRRERRRAERHDPIARARREALKVWAADQTRRRSSAEEGKLSERLKQTGRGSFSDERATVSARSSRRSSTDATVDRNRKGGGGLLKSEWFRRRKPPYRTSAP------REISTQRHVRNIAEIPLGTQRSSPIAPAAGPLQDVARKS-SPRFPWRANMKEPEK--RPRRSAFDLLQEGDVSTAPSTPRVPTTVLSSPSSSSSLVVAGRGSAWARSPSRETAGGILVKHCFFYGSSDKATPRRAAA--EAATASTSFESQWMRQFRKEVQRNPNWWLGSDRF--VHGRTYASPAAENVPGGAKGASGRSARPLFPTALTHRGGG---GMASRTTDLWNEVRLLLAAGRRSGERHAGGSKRGREDDHEEGDPKAARLDILSFGDRLRYTPLSQGAWLVGEGATATTATTTSSASTEKSVRNAMLSEEVHVAVATRDMVDVAAARADVEERRDSKA-GR-----------PDALNRVPSKPAADESVSPTGNV-RAEAGHDDRSKAVRTSGCHDLQTIHAATLAKLRGEIDPFTREELVLRAAEEARGALARDRARNTSPRRASAGV-FRPSPKARKRDSTLESIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQRVS 765 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81222.15782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81222.15782.1 >prot_H-elongata_contig81222.15782.1 ID=prot_H-elongata_contig81222.15782.1|Name=mRNA_H-elongata_contig81222.15782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=665bp EASDGPKIEKIIAILEEWAAWERGLEEEAERSDVARSIKQAADQMAPRFAback to top mRNA from alignment at H-elongata_contig81222:572..2566- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81222.15782.1 ID=mRNA_H-elongata_contig81222.15782.1|Name=mRNA_H-elongata_contig81222.15782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-elongata_contig81222:572..2566- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81222:572..2566- >mRNA_H-elongata_contig81222.15782.1 ID=mRNA_H-elongata_contig81222.15782.1|Name=mRNA_H-elongata_contig81222.15782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3990bp|location=Sequence derived from alignment at H-elongata_contig81222:572..2566- (Himanthalia elongata Himel1 dioecious)back to top |