mRNA_H-elongata_contig81193.15775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81193.15775.1
Unique NamemRNA_H-elongata_contig81193.15775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: D8LBY7_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBY7_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 5.330e-64
Identity = 115/155 (74.19%), Postives = 130/155 (83.87%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM TDNKMLGQFDLVGIPPA RGVPQ+EV  DIDA+GILHVGAKDKQT KEQ I IQS GGL  ADIEKM RDAEEHAE  KK+RDL E+KN+ DS VY TEKN++EHKD IPEDV  ++QK+ID++KAV ESEDAE +  KVQALQTA LKI
Sbjct:  484 EREMATDNKMLGQFDLVGIPPAQRGVPQIEVSFDIDADGILHVGAKDKQTGKEQSIVIQSSGGLGEADIEKMVRDAEEHAEADKKRRDLIEAKNSADSAVYGTEKNLLEHKDKIPEDVKADVQKAIDELKAVMESEDAEQIKEKVQALQTAALKI 638          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: D8S4L9_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S4L9_SELML)

HSP 1 Score: 173 bits (439), Expect = 5.520e-48
Identity = 88/155 (56.77%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM TDNKMLGQFDLVGIPPAPRGVPQ+EV  DIDANGI++V A+DK T KEQ I IQS GGL  +DIEKM ++AE +++  K++++L ++KN+ DS +Y TEK++ EHKD +P DV+T IQ ++ D+K   ESE  + +  K+ A QTA +KI
Sbjct:  449 EREMATDNKMLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVNVSARDKSTGKEQAITIQSSGGLTESDIEKMVKEAEIYSQKDKERKELIDAKNDADSAIYSTEKSLNEHKDKLPSDVVTAIQSAVADLKKAVESEKVDQIRQKISATQTAAMKI 603          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A7S0B1V7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B1V7_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.070e-48
Identity = 87/155 (56.13%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNK LG+FDLVG+PPAPRGVPQ+EV  DIDA+GIL+V AKDK T KEQ I I+S GGL   DIE+M  DAE +AE   ++R + ESKN  DS +Y TEK + EH D +  +   E+QK+ID+ KAV++S+D +D+ AK+ ALQ ++LKI
Sbjct:   14 EREMAADNKNLGEFDLVGLPPAPRGVPQIEVAFDIDADGILNVSAKDKGTGKEQNIVIRSCGGLSDDDIERMVSDAEANAEADAQKRQVIESKNEIDSLIYSTEKTLGEHGDKLEAEAKEEVQKAIDEAKAVKDSDDLDDIKAKISALQQSSLKI 168          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A835YBR1_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YBR1_9CHLO)

HSP 1 Score: 172 bits (435), Expect = 1.990e-47
Identity = 90/155 (58.06%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNK+LGQFDLVGIPPAPRGVPQVEV  DIDANGI+HV AKDK T KEQ I IQS GGL    I++M RDAE++AE  K +++L E+KN  D+ +Y TEK++ E+K  +P+ V+ EI K+I D +A  ++ED  D+ AK+QAL TA++KI
Sbjct:  450 EREMAADNKLLGQFDLVGIPPAPRGVPQVEVTFDIDANGIVHVSAKDKATNKEQSIRIQSSGGLSEDQIQQMVRDAEQYAEKDKGRKELIEAKNEADTAIYTTEKSLNEYKSKLPQAVVDEISKAIADCRAASQTEDLSDLKAKIQALSTASMKI 604          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A2K3DDD4_CHLRE (Uncharacterized protein n=10 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2K3DDD4_CHLRE)

HSP 1 Score: 172 bits (436), Expect = 2.000e-47
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNK+LGQFDLVGIPPAPRGVPQVEV  DIDANGI+HV AKDK T KEQ + IQS GGL    I +M RDAE +AE  K +++L E+KN  D+ +Y TEK++ E+K  +P+ V+ EIQK+I + +A  +SED  D+ AK+QAL TA++KI
Sbjct:  476 EREMAADNKLLGQFDLVGIPPAPRGVPQVEVTFDIDANGIVHVSAKDKATGKEQSVRIQSSGGLSDDQINQMVRDAETYAEKDKTRKELIEAKNEADTAIYTTEKSLAEYKSKLPQAVVDEIQKAITECRAASQSEDLPDLKAKIQALSTASMKI 630          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A7S2X000_9CHLO (Hypothetical protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2X000_9CHLO)

HSP 1 Score: 168 bits (425), Expect = 4.380e-47
Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNKMLGQFDLVGIPPAPRGVPQ+EV  DIDANGI++V A+DK T KEQ I IQS GGL   DIE+M RDAE  A   K++++L E+KN  D+ VY +EK++ EHKD +P+ V+ EI  +I D + V ++E+ ED+N KV ALQ A +KI
Sbjct:  272 EREMAADNKMLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVNVNARDKATGKEQQITIQSSGGLSDGDIEQMVRDAEMFASKDKERKELIEAKNTADNLVYSSEKSLDEHKDKLPQAVVDEITAAITDTRTVAQTENVEDINKKVDALQKAVMKI 426          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A7S3CB60_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CB60_9CHLO)

HSP 1 Score: 171 bits (433), Expect = 8.080e-47
Identity = 89/155 (57.42%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNKMLGQFDLVG+PPAPRGVPQ+EV  DIDANGI++V A+DK T KEQ I IQS GGL   DIE+M RDAE +A   K++++L E+KN  D+ VY +EK++ EHKD +P+ V+ EI  +I D++ V ++E+ ED+N KV ALQ A +KI
Sbjct:  511 EREMAADNKMLGQFDLVGVPPAPRGVPQIEVTFDIDANGIVNVNARDKATGKEQQITIQSSGGLSDGDIEQMVRDAEMYASKDKERKELIEAKNTADNLVYSSEKSLDEHKDKLPQAVVDEINSAITDLRTVAQTENVEDINGKVDALQKAVMKI 665          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A2D9S6H4_9PROT (Molecular chaperone DnaK (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9S6H4_9PROT)

HSP 1 Score: 160 bits (406), Expect = 1.140e-46
Identity = 88/163 (53.99%), Postives = 118/163 (72.39%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKIEAERATDM 489
            ++EM  DNK+LGQFDLVGIPPA RG+PQ+EV  DIDANGI++V AKDK T KEQ I IQ+ GGL   DIEKM +DAE HAE  K +++L E++NN  S V+ TEKN+ EH D + E+   EIQ ++ ++K   ES+DAE+++AK +AL  A++K+      DM
Sbjct:   24 EREMAADNKLLGQFDLVGIPPAARGMPQIEVTFDIDANGIVNVSAKDKATGKEQQIRIQASGGLSDDDIEKMVQDAEAHAEEDKSKKELIEARNNGSSLVHTTEKNLEEHGDKVSEEEKAEIQTALQNLKDCLESDDAEEISAKSEALMQASMKLGEAMYKDM 186          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A7S2AKE1_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AKE1_9CHLO)

HSP 1 Score: 159 bits (403), Expect = 2.150e-46
Identity = 81/155 (52.26%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNK+LG FDLVGIPPAPRG+PQ+EV  DIDANGI++VGAKDK T KEQ I IQS GGL    +E+M RDAE  A   K+++ L E+KN+ D+ +Y  EK++ EHK+ +P D++++I+ +I D++ V++ +D E + +K+Q +Q AT+KI
Sbjct:   30 EREMAADNKLLGNFDLVGIPPAPRGMPQIEVTFDIDANGIVNVGAKDKATNKEQSITIQSSGGLSDEQVEQMVRDAETFAGKDKERKALIEAKNDADTLLYSAEKSLHEHKEKLPADIVSQIETAIADLRTVKDGDDLEAIKSKIQDVQNATMKI 184          
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Match: A0A7S2YZD7_9CHLO (Hypothetical protein n=3 Tax=Chloropicon TaxID=2302914 RepID=A0A7S2YZD7_9CHLO)

HSP 1 Score: 168 bits (425), Expect = 3.120e-46
Identity = 89/155 (57.42%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 DKEMTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKEQGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDTEKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATLKI 465
            ++EM  DNKMLGQFDLVGIPPAPRGVPQ+EV  DIDANGI++V A+DK T KEQ I IQS GGL  +DIE+M RDAE  A   K++++L E+KN+ D+ VY +EK++ EHKD +P++V+  I  +I D +   ++E+ ED+NAKV ALQ A +KI
Sbjct:  392 EREMAADNKMLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVNVNARDKATGKEQQITIQSSGGLSDSDIEQMVRDAEMFAGKDKERKELIEAKNSADNLVYSSEKSLDEHKDKLPQEVVDAISTAITDCRTAAQTENVEDINAKVNALQQAVMKI 546          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81193.15775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBY7_ECTSI5.330e-6474.19Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=287... [more]
D8S4L9_SELML5.520e-4856.77Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A7S0B1V7_9STRA8.070e-4856.13Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835YBR1_9CHLO1.990e-4758.06Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2K3DDD4_CHLRE2.000e-4758.06Uncharacterized protein n=10 Tax=Chlamydomonadales... [more]
A0A7S2X000_9CHLO4.380e-4758.06Hypothetical protein n=1 Tax=Chloropicon primus Ta... [more]
A0A7S3CB60_9CHLO8.080e-4757.42Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A2D9S6H4_9PROT1.140e-4653.99Molecular chaperone DnaK (Fragment) n=1 Tax=Rhodos... [more]
A0A7S2AKE1_9CHLO2.150e-4652.26Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A7S2YZD7_9CHLO3.120e-4657.42Hypothetical protein n=3 Tax=Chloropicon TaxID=230... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81193contigH-elongata_contig81193:1418..1906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score171.4
Seed ortholog evalue3.4e-40
Seed eggNOG ortholog88036.EFJ20961
KEGG koko:K04043
KEGG TC1.A.33.1
KEGG Pathwayko03018,ko04212,ko05152,map03018,map04212,map05152
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the heat shock protein 70 family
EggNOG OGs37PN3@33090,3G8FG@35493,COG0443@1,KOG0102@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.581805-CDS-H-elongata_contig81193:1417..18971622931218.581805-CDS-H-elongata_contig81193:1417..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81193 1418..1897 -
1691679746.4665995-CDS-H-elongata_contig81193:1417..18971691679746.4665995-CDS-H-elongata_contig81193:1417..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81193 1418..1897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.6006823-UTR-H-elongata_contig81193:1897..19061622931218.6006823-UTR-H-elongata_contig81193:1897..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81193 1898..1906 -
1691679746.4763775-UTR-H-elongata_contig81193:1897..19061691679746.4763775-UTR-H-elongata_contig81193:1897..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81193 1898..1906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81193.15775.1prot_H-elongata_contig81193.15775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81193 1418..1897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81193.15775.1

>prot_H-elongata_contig81193.15775.1 ID=prot_H-elongata_contig81193.15775.1|Name=mRNA_H-elongata_contig81193.15775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MTTDNKMLGQFDLVGIPPAPRGVPQVEVLVDIDANGILHVGAKDKQTAKE
QGIFIQSPGGLRYADIEKMERDAEEHAEMGKKQRDLNESKNNTDSTVYDT
EKNMMEHKDYIPEDVMTEIQKSIDDIKAVQESEDAEDMNAKVQALQTATL
KIEAERATDM
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mRNA from alignment at H-elongata_contig81193:1418..1906-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81193.15775.1 ID=mRNA_H-elongata_contig81193.15775.1|Name=mRNA_H-elongata_contig81193.15775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig81193:1418..1906- (Himanthalia elongata Himel1 dioecious)
GACAAAGAAATGACAACAGACAACAAGATGCTTGGGCAGTTCGACCTTGT TGGCATCCCACCGGCTCCACGGGGCGTTCCGCAGGTCGAGGTTCTGGTCG ACATCGACGCCAACGGGATCTTACACGTTGGCGCTAAGGACAAGCAGACG GCCAAGGAGCAGGGCATATTCATCCAAAGCCCCGGCGGCCTGAGATACGC AGACATCGAGAAGATGGAAAGGGACGCCGAGGAGCACGCCGAAATGGGTA AGAAGCAAAGGGACCTCAACGAGTCCAAGAACAACACGGACTCCACCGTA TACGACACGGAGAAAAATATGATGGAGCACAAGGACTATATCCCTGAGGA TGTAATGACGGAGATACAGAAGTCCATTGATGACATCAAAGCGGTGCAGG AGTCAGAAGACGCGGAAGATATGAACGCCAAGGTGCAGGCGTTGCAGACC GCTACGCTCAAAATCGAAGCCGAGAGAGCGACAGACATG
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Coding sequence (CDS) from alignment at H-elongata_contig81193:1418..1906-

>mRNA_H-elongata_contig81193.15775.1 ID=mRNA_H-elongata_contig81193.15775.1|Name=mRNA_H-elongata_contig81193.15775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig81193:1418..1906- (Himanthalia elongata Himel1 dioecious)
ATGACAACAGACAACAAGATGCTTGGGCAGTTCGACCTTGTTGGCATCCC
ACCGGCTCCACGGGGCGTTCCGCAGGTCGAGGTTCTGGTCGACATCGACG
CCAACGGGATCTTACACGTTGGCGCTAAGGACAAGCAGACGGCCAAGGAG
CAGGGCATATTCATCCAAAGCCCCGGCGGCCTGAGATACGCAGACATCGA
GAAGATGGAAAGGGACGCCGAGGAGCACGCCGAAATGGGTAAGAAGCAAA
GGGACCTCAACGAGTCCAAGAACAACACGGACTCCACCGTATACGACACG
GAGAAAAATATGATGGAGCACAAGGACTATATCCCTGAGGATGTAATGAC
GGAGATACAGAAGTCCATTGATGACATCAAAGCGGTGCAGGAGTCAGAAG
ACGCGGAAGATATGAACGCCAAGGTGCAGGCGTTGCAGACCGCTACGCTC
AAAATCGAAGCCGAGAGAGCGACAGACATGATGACAACAGACAACAAGAT
GCTTGGGCAGTTCGACCTTGTTGGCATCCCACCGGCTCCACGGGGCGTTC
CGCAGGTCGAGGTTCTGGTCGACATCGACGCCAACGGGATCTTACACGTT
GGCGCTAAGGACAAGCAGACGGCCAAGGAGCAGGGCATATTCATCCAAAG
CCCCGGCGGCCTGAGATACGCAGACATCGAGAAGATGGAAAGGGACGCCG
AGGAGCACGCCGAAATGGGTAAGAAGCAAAGGGACCTCAACGAGTCCAAG
AACAACACGGACTCCACCGTATACGACACGGAGAAAAATATGATGGAGCA
CAAGGACTATATCCCTGAGGATGTAATGACGGAGATACAGAAGTCCATTG
ATGACATCAAAGCGGTGCAGGAGTCAGAAGACGCGGAAGATATGAACGCC
AAGGTGCAGGCGTTGCAGACCGCTACGCTCAAAATCGAAGCCGAGAGAGC
GACAGACATG
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