mRNA_H-elongata_contig81112.15767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81112.15767.1
Unique NamemRNA_H-elongata_contig81112.15767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.210e-49
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:   10 SAKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQA 288
            + KLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQ AETMISEEIESVQ EADE+E GWSQSIWPLAMQLRT+LVQRREQA
Sbjct:  106 AGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLRTVLVQRREQA 198
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.950e-32
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQA 288
            LRN LLKRAIADIPII+R+Q EGPG+ N+YQQAMIG++EW A+Q AE +I EEIE VQ EA+E+E GW Q IW +A +LR  L+QR++QA
Sbjct:  116 LRNPLLKRAIADIPIIMRLQKEGPGMQNLYQQAMIGDREWQAYQAAEALIGEEIEQVQAEAEEIEPGWGQQIWRMASELRQALLQRQQQA 205
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S3L5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5D8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQ 285
            AL+KRAIADIPI+  +Q E PG+  +Y Q+M  EK+W A+Q AE ++S E++ V+ E+D++E GWSQ IW  AMQ   +L QR EQ
Sbjct:  145 ALMKRAIADIPILQHIQKESPGMNKLYSQSMCSEKQWRAYQKAEALVSAEVDEVRRESDQIEPGWSQMIWRQAMQYHQMLKQRHEQ 230
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A1Z5KHC6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHC6_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 5.050e-21
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            L  AL+KRAIADIP++  +Q E  G+  +Y Q+M   K+W ++Q AE+++S+E+E V+ EADE+E GWSQSIW  AMQ   +L QR E      EK+ E AI K+
Sbjct:  133 LAQALMKRAIADIPMVQHIQKESSGMNKLYSQSMCSVKQWRSYQQAESLVSQEVEEVRAEADEIEPGWSQSIWRQAMQYHQMLKQRHE----LEEKQREEAIQKR 233
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A6U3U3N1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3U3N1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.640e-21
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRRE 282
            L  AL+KR IADIPI+  +Q E PG+  +Y Q+M   K+W ++Q AE M+S E++ V+ EADE+E GWSQ IW  AMQ   +L QR E
Sbjct:  133 LAQALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRSYQAAEAMVSAEVDEVRAEADEIEPGWSQVIWRQAMQYHNMLKQRHE 220
[Close]
BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: B8C1S0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1S0_THAPS)

HSP 1 Score: 95.9 bits (237), Expect = 8.520e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA 300
            L  AL+KR IADIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EADEVE GWSQ IW  AMQ   +L Q+ EQA+ AA
Sbjct:  139 LAQALMKRCIADIPIVTFIQRESAGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEVEPGWSQVIWRQAMQYHNMLKQKEEQAKQAA 232
[Close]
BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S1E5I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5I0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 9.970e-21
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            AL+KR IADIPI+  +Q E PG+  +Y Q+M   K+W  +Q AE ++S E++ V+ EADE+E GWSQ IW  AMQ   +L Q+ EQ    A++ A AA+ KK
Sbjct:   96 ALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRTYQAAEALVSGEVDEVRAEADEIEPGWSQVIWKQAMQYHNMLKQKHEQE---AQQVAAAAVKKK 194
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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: K0T2G4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2G4_THAOC)

HSP 1 Score: 95.5 bits (236), Expect = 1.610e-20
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA 300
            L  AL+KR IADIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EADE+E GWSQ++W  AMQ   ++ Q+ EQA++ A
Sbjct:  129 LAQALMKRCIADIPIVTHIQKESQGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEIEPGWSQAVWRQAMQYHNMIKQKEEQAKSQA 222
[Close]
BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S4HV37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HV37_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-20
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLL 267
            L  AL+KRAI DIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EAD++EAGWSQ IW  AMQ   +L
Sbjct:   16 LAQALMKRAIGDIPIVTHIQKESSGMNKLYSQSMCSVKQWRSYQAAEAMVSGEVEEVRGEADQIEAGWSQVIWRQAMQYHNML 98
[Close]
BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A448YU82_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU82_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.160e-20
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            AL+KRAI DIPI+  +Q E  G+  +Y Q+M    +W A+Q AETM+S E++ V+ EADE+E GWSQ IW  AMQ   +L Q+ EQ + AA   AE A  KK
Sbjct:  124 ALMKRAIGDIPIVTFIQKESAGMNKLYSQSMCSVSQWRAYQNAETMVSTEVDEVRAEADEIEPGWSQVIWRQAMQYHGMLKQKHEQEQRAA---AETAAKKK 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP83_ECTSI1.210e-4992.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z738_9STRA4.950e-3265.56Pre protein translocase subunit Sec66-domain-conta... [more]
A0A7S3L5D8_9STRA2.500e-2152.33Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1Z5KHC6_FISSO5.050e-2148.57Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6U3U3N1_9STRA7.640e-2151.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8C1S0_THAPS8.520e-2152.13Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1E5I0_9STRA9.970e-2148.04Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
K0T2G4_THAOC1.610e-2047.87Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4HV37_9STRA3.000e-2050.60Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A448YU82_9STRA6.160e-2050.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81112contigH-elongata_contig81112:72..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue4.5e-40
Seed eggNOG ortholog2880.D7FP83
EggNOG free text desc.Preprotein translocase subunit Sec66
EggNOG OGs2BH0U@1,2S501@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size489
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81112.15767.1prot_H-elongata_contig81112.15767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81112 72..1629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931217.9331543-CDS-H-elongata_contig81112:71..2231622931217.9331543-CDS-H-elongata_contig81112:71..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 72..223 +
1691679746.211592-CDS-H-elongata_contig81112:71..2231691679746.211592-CDS-H-elongata_contig81112:71..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 72..223 +
1622931217.9465675-CDS-H-elongata_contig81112:511..6161622931217.9465675-CDS-H-elongata_contig81112:511..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 512..616 +
1691679746.2226615-CDS-H-elongata_contig81112:511..6161691679746.2226615-CDS-H-elongata_contig81112:511..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 512..616 +
1622931217.962856-CDS-H-elongata_contig81112:1397..16291622931217.962856-CDS-H-elongata_contig81112:1397..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 1398..1629 +
1691679746.2321997-CDS-H-elongata_contig81112:1397..16291691679746.2321997-CDS-H-elongata_contig81112:1397..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81112 1398..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81112.15767.1

>prot_H-elongata_contig81112.15767.1 ID=prot_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MACSAKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQ
TAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA
EKEAEAAIGKKTGKGKKAPAEKSAVSASPSGKKAVTVAAAPTATAAAKDK
DDAGNVSVGDID*
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mRNA from alignment at H-elongata_contig81112:72..1629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81112.15767.1 ID=mRNA_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-elongata_contig81112:72..1629+ (Himanthalia elongata Himel1 dioecious)
ATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATAGC
AGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTACA
ACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCCAG
ACGTGAGGAAATCATTATGTTCCTCTCCTGAGTCTATGGGCGTATAGTCT
AGCCTTTTCTTTTTGGTGTGATTCGAGTTTTTGCTTGAGTCATGTGTGTT
TGTTCGATGCTTGAATATATTCTTCACTCACCCCCCCCTCTCTCAGCAAC
CTTCTTCATTCGGTGCCACCTTAACCCCTATGGAACTCGATCTGTTTTTT
TAAACCCTAAATTCAACATAAAGCTTGAAATCCAGTTCCAAAAGGGTTAA
TATTAGCTATACCCCCTTCTTGTTGGTGTGTGCGCGACAGGGCGGAGACT
ATGATATCGGAGGAAATAGAGTCCGTGCAGACCGAGGCGGACGAGGTTGA
GGCCGGATGGAGCCAGTCTATTTGGCCGTTAGCGATGCAGCTCAGGTGAA
CTTTTGGAAACCCTCTGGCTTTGTTGGTCACACAATAGAACCGGGAGTGG
GGGTGAGGACTGATACTCACGGGAACCGACATGCGCTTTCTTTGGTTCTG
TGTGTATATTCAGTGTTTGCCTCGGGAAAGCGCCAGGAGGGCATTCCCTG
CGCTGTTGTACAGTCCGTGGTTTCTTCTTATGCCCCCCGCCCCTCTTTCC
ACCAGGCTTGAGAGATGGCGATGGCAGACGTGTGGCCTTTCGCCATACGG
CCTCTAATGCGTTTGACGTCGCGTTCTTGCCGTATCGGCGAATGTCCTCC
CTCTCATACGAACTAGATAAGCCTTGCCTTGCCTTCCCTAGTCTAGTCCA
TCGAGCCAGAGAATCAGCGTTGACTCACTAGCTGGCGGAGTAACCGGTTC
CTTTTCGCGCGTAACCTTCCTAAATACTCTTGGGTCTGAGCAGAGCCCGG
GTGGTGACCCAGCGCACATGCGGTAACCCTTCACTCTCCTGTGTATTTAT
TAAATTGCACATAACCGCGCAATCCGGCCCTCTCTGTCATGCTAGCTAGC
TAGCTCTTCTAGGCTACTCTCGCATTGATCCTCCCTGTGTGTGTACCAAC
GTAACAGGACAAAGCGCATGTTTGCTCACTCGACCCAATCCTTCCCTTTT
TTTAGTCTCCGTGTCATGTTTTTTTCTTCCTAATCTTTTTATGATACAGT
ATGTGTACTGCTTGGGTGTGTCGATCGGTTTTCCACGTTATGACTCCGTT
GTTGTTTTCCGGGTGTGAACATGCAGAACATTGCTCGTGCAGCGACGGGA
GCAGGCGGAAGCGGCGGCAGAAAAAGAGGCCGAGGCAGCAATCGGGAAAA
AGACAGGAAAAGGAAAAAAAGCTCCAGCGGAGAAGTCAGCTGTTTCCGCG
TCACCCTCGGGAAAGAAGGCTGTAACCGTAGCAGCGGCACCAACAGCAAC
AGCGGCGGCAAAGGACAAGGACGATGCGGGAAATGTTTCTGTCGGGGATA
TTGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81112:72..1629+

>mRNA_H-elongata_contig81112.15767.1 ID=mRNA_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig81112:72..1629+ (Himanthalia elongata Himel1 dioecious)
ATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATAGC
AGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTACA
ACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCCAG
ACATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATA
GCAGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTA
CAACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCC
AGACGGCGGAGACTATGATATCGGAGGAAATAGAGTCCGTGCAGACCGAG
GCGGACGAGGTTGAGGCCGGATGGAGCCAGTCTATTTGGCCGTTAGCGAT
GCAGCTCAGGGCGGAGACTATGATATCGGAGGAAATAGAGTCCGTGCAGA
CCGAGGCGGACGAGGTTGAGGCCGGATGGAGCCAGTCTATTTGGCCGTTA
GCGATGCAGCTCAGAACATTGCTCGTGCAGCGACGGGAGCAGGCGGAAGC
GGCGGCAGAAAAAGAGGCCGAGGCAGCAATCGGGAAAAAGACAGGAAAAG
GAAAAAAAGCTCCAGCGGAGAAGTCAGCTGTTTCCGCGTCACCCTCGGGA
AAGAAGGCTGTAACCGTAGCAGCGGCACCAACAGCAACAGCGGCGGCAAA
GGACAAGGACGATGCGGGAAATGTTTCTGTCGGGGATATTGATTGAAACA
TTGCTCGTGCAGCGACGGGAGCAGGCGGAAGCGGCGGCAGAAAAAGAGGC
CGAGGCAGCAATCGGGAAAAAGACAGGAAAAGGAAAAAAAGCTCCAGCGG
AGAAGTCAGCTGTTTCCGCGTCACCCTCGGGAAAGAAGGCTGTAACCGTA
GCAGCGGCACCAACAGCAACAGCGGCGGCAAAGGACAAGGACGATGCGGG
AAATGTTTCTGTCGGGGATATTGATTGA
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