mRNA_H-elongata_contig8111.15766.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8111.15766.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 773 bits (1995), Expect = 3.600e-232 Identity = 593/1431 (41.44%), Postives = 753/1431 (52.62%), Query Frame = 3
Query: 1539 LSADVQVEVSSVAVYQAHP-DDAASPLA----------VDALEPIVSWG-----------EDTNGPSVESPGAMTGNSARSVRRCLIDRAQRLRRESSSVEALTESPESPTSAETQQKPRSARNTPRGHATATPSSPHGTLLLPKGRPRTV-SEVCALQYRLLKRSEGYGGAVDNEVLGGAGGGDFVGGASALTCHNVAAGALRVRIGEVLLERMLNF---VGREKINED------------------------AETETQPEQEPESVADSA-DQRQGGVLDSAGVIPARNLNSLLPPPPRASAVRRTSRPSTVTTSETSLHLVLQSVDVALKLPATSATAEEESALAIEGNGCGSSAAFPSAATSFLVLSFRRFEADGSESNTSVVENGAPRETRAQRSVSFYADPREDNMCQRVCLFLLDDLSVVVVDGSAVAEATAEQGQPIAGSTMP-----SLAENVFAAGAGTTLPALYRLIQVGGARANAKILSTSSVGRVPGGAGAEMVVGAAVALRNPPEVLFNASCETVHVSASRGAGVVMVQACLLGKTVWSRSPWGDVNSDGGRENPRDSSDSGATGRQLWRRGIRTSLEGVCVGGAVKDGSVQLTGNMSRLSVGRVG-GSGSSWPHSVYPAIGADVALFAAPPGDGGGDGLSYSAELAKDGRESWKIKLATTFKSASIHYVRTKRAVRELKEVMNE-------CKAAATAAAPRSSSRVEFDIRGASVIMLLPFELRLEVDGVQLNSR------PPSRLPLIGDGIDLDLVARDVKVFQALHGASRWRSQDAQPPAIRCSARGSVSIRPSAKETRVALESEHVRVRLTPRFCSSFGLFVRFMVGPPTWPTPVTHSTAPAAAPGAIVPVSFTFMLRLRKAD-------------------------QNTLGAVSSGRGSTSSFEMDFESVTGTQRRDARLNAPALPQSALRLIVAFLGANPDSGGGGSVERGVDVFWAWVARVSPRKGNEHRRGGCGKRGSLYVKPFIIPLNGVALRSGARAFSVGVKTWGPWHRMVSSLSLRLAPTLLTCYPPTFRELVSSYNRFGSNAFRSYRSRADMPTRRTAVVHYDVDIRGCGAVLLASLADGARGIHVSAELIEVKEDKEGTTR---PSGGILSRRGQDGHGPSRSIVDDTVLAISGLIGPVEIAFVQDWQSLPVLLPRGGDGLGSGSVHGAEAGATASGEGVRITPLCVSIDVRWVVSYDRADRCRLDVSLSSVQFYLEQPHFDLFMRVAQIFFAADYPGALPP----------PKSPSKLSTSGGG-RWAKIDSFLAVSLRLSLLQIVLAMGKKNGSLPPVLEIDVASVRLARGGVLTVRHVSINSWAQGVEDLTALPGAVPTTMRRGDGGG-GYCVLARSGHSEDSGKDFARMEVRVQEIPQSRRRSLPSLPQLDVVFQV 5501
LS DV+V+VSS+ V A +DAA+P A +D LEP+VSWG ++ + S + G +A V+RCLI+ AQ S E ES E+ +SAR P P + P PR V + ALQYRLLKR GG + +GG G S L CH++A GALRV++ E+LLE++L F VG E + A + +P ++ A D G L S +P R +NS +SETSLH L+SV+VAL L + A G G + A F VLS + E GSES G Q V+ + D QR+C +L +LS+V++DGS A A++ P+ P SLA+ VF AG T + RL+++GGAR A+ILS P AV + P+ LFNAS E+ V S GA +++++A +L + + P S G PR + G W RG+ +LEGV VGG VK G QLTGNM RLSVGR+G G SV P+ DV + A G+G +GLS++ E++ D +KLAT FKSA +H++ K+ V ++ E C +ATAAA R S EFDIRG++V + LPFEL LEV+ V L + P GD +DLD+VA DV++F HG+S + S+D PPAIRC+ARG V++RP+A T V+LESEHVRVRLTP FCSSFGLFVR MVGPP P + A G P SFTF L++R D Q+ A + G GS +SF+M FE+V TQRR+ NAPALP A +LI AF+G G VF AW+ S RK R G + G YV+PF++ L + + A+AFSV + GP HR+V+SLSLRLAP +L YPPTFR L+ YNRF +NAFRS+RSRADMP RR AV+ YD+DI+GC AVLLASLADGARG+H+SA + KED P+G S SI DT LA+SG +GPV +AF+QDW+S+ LP G + G A A LC ID+RW + YD DRCR DVSLSSVQFYLEQPHFDL +RVAQIF AADYPGALPP P+ P + GG A++DSFLA SLRL LLQ VLA GK++GS PPVLEIDVASVRLARGGVLTVRH+S+NSW+Q + A DG G GY VL RSG SE+SGKDF RMEVRV EI + P QLDVV QV
Sbjct: 753 LSTDVKVDVSSIVVRHARLFEDAATPAADKPPDQADKGLDYLEPVVSWGAAVMPDAPPTSQEGDLGSGRTDGLADLRTAAIVQRCLIELAQ------GSPELGAADGES-IDGESNSSRQSAR-APXXXXXXXXXXPWAQVF-PSAAPRPVPKDSSALQYRLLKRK---GGGTSTDGSPDSGGVAITGTVSTLACHDLAVGALRVQLAELLLEKLLKFFGVVGGEAGGTEPXXXXXXXXXXXXXXXXXXXXVALASVQGRPPPRASRLSPRASDAGSGSALSSPRTLPPRPVNS---------------------SSETSLHFALRSVEVALGLAGGAHEA---------GENVGDRSRDQPA---FCVLSLSQLELSGSESALYGCGGGE------QHFVATAPQRQRDEESQRLCSLVLGNLSIVLIDGSVQA---ADESAPLGRQGSPPLMSRSLAQEVFLAGGNTA--GIRRLVRLGGARVTAEILSKLVGDTEP----------TAVGTYSAPDFLFNASLESGEVCVSVGAALLVLEAYVLARKMGGVYPDALAISVGEICAPRVHRNRG------WSRGVGAALEGVSVGGVVKSGGCQLTGNMRRLSVGRMGAGVPLQGESSVMPS---DVVVLEALRGEGSDEGLSWTLEVSGDSEGVGGVKLATVFKSARLHHMNAKKVVEDIMLASKEWTARAARCLPSATAAARRRSQPFEFDIRGSTVTLHLPFELELEVEDVHLGTPGFNQAVEPEGERANGD-LDLDIVAGDVRMFHKPHGSSFYSSEDVVPPAIRCAARGVVAVRPTANATAVSLESEHVRVRLTPAFCSSFGLFVRLMVGPPPRPLAADAAAAALMREGR-PPNSFTFELKVRTVDVGFFTGPCCPSAVSAAFLVGGVSMKQHATAAGAPGAGSRASFQMSFEAVEATQRRNPSRNAPALPYEAAQLIGAFVGHGGAPG----------VFSAWL---SARK----RPVGSSQAGPTYVQPFLVALGSSS--ATAQAFSVVSTSSGPRHRLVNSLSLRLAPMMLAWYPPTFRILMGHYNRFAANAFRSFRSRADMPRRRIAVLSYDIDIQGCSAVLLASLADGARGVHLSAGKVTFKEDTAAAAAAASPAGMGGSHASSSALALDASIAPDTTLAMSGFVGPVGMAFLQDWRSV---LPTSVAPSAGGRLDGDAAAAPVQ--------LCAPIDLRWAMFYDEFDRCRQDVSLSSVQFYLEQPHFDLCVRVAQIFVAADYPGALPPAVVAPQIAGHPQDPVHGAPVGGATNNAQVDSFLATSLRLPLLQFVLANGKRSGSFPPVLEIDVASVRLARGGVLTVRHLSVNSWSQDADSPARSEAAAGEIGNENDGSGCGYRVLGRSGQSEESGKDFLRMEVRVPEIRSGKLG--PRQAQLDVVLQV 2074 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8111.15766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8111.15766.1 >prot_H-elongata_contig8111.15766.1 ID=prot_H-elongata_contig8111.15766.1|Name=mRNA_H-elongata_contig8111.15766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1324bp MDLLSADVQVEVSSVAVYQAHPDDAASPLAVDALEPIVSWGEDTNGPSVEback to top mRNA from alignment at H-elongata_contig8111:971..9672+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8111.15766.1 ID=mRNA_H-elongata_contig8111.15766.1|Name=mRNA_H-elongata_contig8111.15766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8702bp|location=Sequence derived from alignment at H-elongata_contig8111:971..9672+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8111:971..9672+ >mRNA_H-elongata_contig8111.15766.1 ID=mRNA_H-elongata_contig8111.15766.1|Name=mRNA_H-elongata_contig8111.15766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=7944bp|location=Sequence derived from alignment at H-elongata_contig8111:971..9672+ (Himanthalia elongata Himel1 dioecious)back to top |