mRNA_H-elongata_contig81090.15764.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI) HSP 1 Score: 65.5 bits (158), Expect = 1.580e-10 Identity = 28/85 (32.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQ-DYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
+ +++LKY++RT ++GIT+ G D + +A++D ++A+CP TR+S S ++ + + W SR Q I ++ +++YVA+ + A
Sbjct: 1122 AAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAA 1206
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A699ULM5_TANCI (Uncharacterized mitochondrial protein AtMg00810-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699ULM5_TANCI) HSP 1 Score: 60.5 bits (145), Expect = 4.690e-10 Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDA-ISWHSRAQKITPSTYLESKYVALAKT 249
+V+++ Y++ T +G+ Y +D G A+ D +HA CP +R+S SGG L GD +SW S+ Q T + E++YV+L+ T
Sbjct: 2 TVKRIFHYLKDTIHMGLWYP-KDTGFDLTAFLDSDHAGCPDSRKSTSGGVQFLGGDKLVSWSSKKQDCTSMSSAEAEYVSLSAT 84
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J6HPP4_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPP4_TENMO) HSP 1 Score: 62.8 bits (151), Expect = 1.360e-9 Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
+ +++L+Y++ T +G+TYG K ADW +CP RRS +G LL+G ++SW S+ QK + E++Y+AL++
Sbjct: 251 AAKRVLRYLKGTMGMGLTYGSNAEPIKGFVDADWG--SCPENRRSYTGFVFLLNGGSVSWDSKKQKTVALSTTEAEYMALSE 330
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J5Z960_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z960_9ROSI) HSP 1 Score: 62.8 bits (151), Expect = 1.390e-9 Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
+V+ +LKYMRRT D + YGG++ G I Y D + T RS SG L+G A+SW S Q I + +E++Y+A +K A
Sbjct: 866 TVKNILKYMRRTKDTFLIYGGKE-GLSVIGYTDASFQTDKDDSRSQSGFVFCLNGGAMSWKSSKQSIVADSTIEAEYIAASKAA 948
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A4S4LMB9_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LMB9_9AGAM) HSP 1 Score: 62.4 bits (150), Expect = 1.620e-9 Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALA 243
+V+ + +Y++ TAD GITY G+ T+ + Y D N+A RRS++G LL+G I+W S+ Q+ + E++YVA A
Sbjct: 251 AVKHLCRYLKGTADYGITYDGRQADTRLVGYFDTNYAV-ELNRRSSTGWVFLLAGGLIAWSSKKQQSVALSTTEAEYVAAA 330
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A443S2Z7_9ACAR (Integrase core domain protein-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S2Z7_9ACAR) HSP 1 Score: 62.4 bits (150), Expect = 1.830e-9 Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
+ +++L+Y++ T+ GIT+ G Y D ++A +RRS SG +LSG A+SW SR Q+I + E++Y+ALA+
Sbjct: 330 AAKRVLRYLKGTSKHGITFNANSNGPSLYGYCDADYAGDLDSRRSTSGYVFILSGGAVSWMSRVQRIVALSTTEAEYIALAE 411
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A4S4LBF1_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LBF1_9AGAM) HSP 1 Score: 62.0 bits (149), Expect = 2.570e-9 Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
+V+ + +Y++ TAD GITY G+ T+ + Y D N+A RRS++G LL+G I+W S+ Q+ + E++Y+A A A
Sbjct: 609 AVKHLCRYLKGTADYGITYDGRQGDTRLVRYFDANYAV-ELNRRSSTGWVFLLAGGTIAWSSKKQQSVALSTTEAEYIAAAAAA 691
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J6LCJ9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LCJ9_TENMO) HSP 1 Score: 62.0 bits (149), Expect = 2.620e-9 Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
+ +++L+Y++ T +G+TYG K ADW +CP RRS +G LL+G +SW S+ QK + E++Y+AL++
Sbjct: 1180 AAKRVLRYLKGTMGMGLTYGSNAEPIKGFVDADWG--SCPENRRSYTGFVFLLNGGPVSWDSKKQKTVALSTTEAEYMALSE 1259
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A443QZM7_9ACAR (RxLR effector candidate protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QZM7_9ACAR) HSP 1 Score: 60.5 bits (145), Expect = 3.200e-9 Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
+ +++L+Y++ T + GI Y + G + D ++A +RRS SG ++SG AISW SR Q+I + E++Y+ALA+ A
Sbjct: 1 AAKRVLRYLKGTTNYGIKYSAEANGYCLYGFCDADYAGDLDSRRSTSGYVFIMSGGAISWMSRVQRIVALSTTEAEYIALAEAA 84
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: UPI0015BF2086 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BF2086) HSP 1 Score: 61.6 bits (148), Expect = 3.270e-9 Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
+V+ +LKY+RRT D+ + YGG + K Y D + T +S SG +L+G A+SW S Q++ + ES+YVA ++ A
Sbjct: 192 AVKNILKYLRRTKDMFLVYGGLEESLKVKGYTDASFQTDRDDSKSQSGYVFILNGGAVSWKSSKQEVIAQSTTESEYVAASEAA 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81090.15764.1 >prot_H-elongata_contig81090.15764.1 ID=prot_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSback to top mRNA from alignment at H-elongata_contig81090:1039..1290- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81090.15764.1 ID=mRNA_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig81090:1039..1290- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81090:1039..1290- >mRNA_H-elongata_contig81090.15764.1 ID=mRNA_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig81090:1039..1290- (Himanthalia elongata Himel1 dioecious)back to top |