mRNA_H-elongata_contig81090.15764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81090.15764.1
Unique NamemRNA_H-elongata_contig81090.15764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 65.5 bits (158), Expect = 1.580e-10
Identity = 28/85 (32.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQ-DYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
            + +++LKY++RT ++GIT+ G  D   + +A++D ++A+CP TR+S S   ++ +   + W SR Q I  ++  +++YVA+ + A
Sbjct: 1122 AAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAA 1206          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A699ULM5_TANCI (Uncharacterized mitochondrial protein AtMg00810-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699ULM5_TANCI)

HSP 1 Score: 60.5 bits (145), Expect = 4.690e-10
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDA-ISWHSRAQKITPSTYLESKYVALAKT 249
            +V+++  Y++ T  +G+ Y  +D G    A+ D +HA CP +R+S SGG   L GD  +SW S+ Q  T  +  E++YV+L+ T
Sbjct:    2 TVKRIFHYLKDTIHMGLWYP-KDTGFDLTAFLDSDHAGCPDSRKSTSGGVQFLGGDKLVSWSSKKQDCTSMSSAEAEYVSLSAT 84          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J6HPP4_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPP4_TENMO)

HSP 1 Score: 62.8 bits (151), Expect = 1.360e-9
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
            + +++L+Y++ T  +G+TYG      K    ADW   +CP  RRS +G   LL+G ++SW S+ QK    +  E++Y+AL++
Sbjct:  251 AAKRVLRYLKGTMGMGLTYGSNAEPIKGFVDADWG--SCPENRRSYTGFVFLLNGGSVSWDSKKQKTVALSTTEAEYMALSE 330          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J5Z960_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z960_9ROSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.390e-9
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
            +V+ +LKYMRRT D  + YGG++ G   I Y D +  T     RS SG    L+G A+SW S  Q I   + +E++Y+A +K A
Sbjct:  866 TVKNILKYMRRTKDTFLIYGGKE-GLSVIGYTDASFQTDKDDSRSQSGFVFCLNGGAMSWKSSKQSIVADSTIEAEYIAASKAA 948          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A4S4LMB9_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LMB9_9AGAM)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-9
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALA 243
            +V+ + +Y++ TAD GITY G+   T+ + Y D N+A     RRS++G   LL+G  I+W S+ Q+    +  E++YVA A
Sbjct:  251 AVKHLCRYLKGTADYGITYDGRQADTRLVGYFDTNYAV-ELNRRSSTGWVFLLAGGLIAWSSKKQQSVALSTTEAEYVAAA 330          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A443S2Z7_9ACAR (Integrase core domain protein-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S2Z7_9ACAR)

HSP 1 Score: 62.4 bits (150), Expect = 1.830e-9
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
            + +++L+Y++ T+  GIT+     G     Y D ++A    +RRS SG   +LSG A+SW SR Q+I   +  E++Y+ALA+
Sbjct:  330 AAKRVLRYLKGTSKHGITFNANSNGPSLYGYCDADYAGDLDSRRSTSGYVFILSGGAVSWMSRVQRIVALSTTEAEYIALAE 411          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A4S4LBF1_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LBF1_9AGAM)

HSP 1 Score: 62.0 bits (149), Expect = 2.570e-9
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
            +V+ + +Y++ TAD GITY G+   T+ + Y D N+A     RRS++G   LL+G  I+W S+ Q+    +  E++Y+A A  A
Sbjct:  609 AVKHLCRYLKGTADYGITYDGRQGDTRLVRYFDANYAV-ELNRRSSTGWVFLLAGGTIAWSSKKQQSVALSTTEAEYIAAAAAA 691          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A8J6LCJ9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LCJ9_TENMO)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-9
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAK 246
            + +++L+Y++ T  +G+TYG      K    ADW   +CP  RRS +G   LL+G  +SW S+ QK    +  E++Y+AL++
Sbjct: 1180 AAKRVLRYLKGTMGMGLTYGSNAEPIKGFVDADWG--SCPENRRSYTGFVFLLNGGPVSWDSKKQKTVALSTTEAEYMALSE 1259          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: A0A443QZM7_9ACAR (RxLR effector candidate protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QZM7_9ACAR)

HSP 1 Score: 60.5 bits (145), Expect = 3.200e-9
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
            + +++L+Y++ T + GI Y  +  G     + D ++A    +RRS SG   ++SG AISW SR Q+I   +  E++Y+ALA+ A
Sbjct:    1 AAKRVLRYLKGTTNYGIKYSAEANGYCLYGFCDADYAGDLDSRRSTSGYVFIMSGGAISWMSRVQRIVALSTTEAEYIALAEAA 84          
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Match: UPI0015BF2086 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BF2086)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-9
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 SVEKMLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLSGDAISWHSRAQKITPSTYLESKYVALAKTA 252
            +V+ +LKY+RRT D+ + YGG +   K   Y D +  T     +S SG   +L+G A+SW S  Q++   +  ES+YVA ++ A
Sbjct:  192 AVKNILKYLRRTKDMFLVYGGLEESLKVKGYTDASFQTDRDDSKSQSGYVFILNGGAVSWKSSKQEVIAQSTTESEYVAASEAA 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81090.15764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K651_LASNI1.580e-1032.94Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A699ULM5_TANCI4.690e-1036.90Uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A8J6HPP4_TENMO1.360e-935.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5Z960_9ROSI1.390e-940.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4LMB9_9AGAM1.620e-938.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A443S2Z7_9ACAR1.830e-936.59Integrase core domain protein-like protein n=1 Tax... [more]
A0A4S4LBF1_9AGAM2.570e-936.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6LCJ9_TENMO2.620e-935.37Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A443QZM7_9ACAR3.200e-935.71RxLR effector candidate protein-like protein (Frag... [more]
UPI0015BF20863.270e-936.90Ty1/Copia family RNAse HI domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81090contigH-elongata_contig81090:1039..1290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog4558.Sb10g007953.1
EggNOG free text desc.source UniProtKB
EggNOG OGs37RIF@33090,3G9AM@35493,3M33Z@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931217.3085687-CDS-H-elongata_contig81090:1038..12781622931217.3085687-CDS-H-elongata_contig81090:1038..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81090 1039..1278 -
1691679745.8829806-CDS-H-elongata_contig81090:1038..12781691679745.8829806-CDS-H-elongata_contig81090:1038..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81090 1039..1278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931217.323261-UTR-H-elongata_contig81090:1278..12901622931217.323261-UTR-H-elongata_contig81090:1278..1290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81090 1279..1290 -
1691679745.8975508-UTR-H-elongata_contig81090:1278..12901691679745.8975508-UTR-H-elongata_contig81090:1278..1290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81090 1279..1290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81090.15764.1prot_H-elongata_contig81090.15764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81090 1039..1278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81090.15764.1

>prot_H-elongata_contig81090.15764.1 ID=prot_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MLKYMRRTADLGITYGGQDYGTKRIAYADWNHATCPYTRRSASGGAVLLS
GDAISWHSRAQKITPSTYLESKYVALAKTA
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mRNA from alignment at H-elongata_contig81090:1039..1290-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81090.15764.1 ID=mRNA_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig81090:1039..1290- (Himanthalia elongata Himel1 dioecious)
TCCGTGGAGAAAATGCTAAAGTACATGCGGAGGACTGCGGACCTGGGTAT CACCTACGGTGGACAGGACTATGGAACTAAAAGGATAGCGTACGCGGATT GGAACCATGCGACATGTCCATACACTCGACGCTCAGCATCAGGAGGAGCA GTGCTATTAAGTGGGGACGCGATTAGCTGGCACTCGAGGGCACAGAAAAT CACACCTTCAACGTATTTGGAATCGAAATATGTTGCATTGGCGAAGACGG CG
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Coding sequence (CDS) from alignment at H-elongata_contig81090:1039..1290-

>mRNA_H-elongata_contig81090.15764.1 ID=mRNA_H-elongata_contig81090.15764.1|Name=mRNA_H-elongata_contig81090.15764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig81090:1039..1290- (Himanthalia elongata Himel1 dioecious)
ATGCTAAAGTACATGCGGAGGACTGCGGACCTGGGTATCACCTACGGTGG
ACAGGACTATGGAACTAAAAGGATAGCGTACGCGGATTGGAACCATGCGA
CATGTCCATACACTCGACGCTCAGCATCAGGAGGAGCAGTGCTATTAAGT
GGGGACGCGATTAGCTGGCACTCGAGGGCACAGAAAATCACACCTTCAAC
GTATTTGGAATCGAAATATGTTGCATTGGCGAAGACGGCGATGCTAAAGT
ACATGCGGAGGACTGCGGACCTGGGTATCACCTACGGTGGACAGGACTAT
GGAACTAAAAGGATAGCGTACGCGGATTGGAACCATGCGACATGTCCATA
CACTCGACGCTCAGCATCAGGAGGAGCAGTGCTATTAAGTGGGGACGCGA
TTAGCTGGCACTCGAGGGCACAGAAAATCACACCTTCAACGTATTTGGAA
TCGAAATATGTTGCATTGGCGAAGACGGCG
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