mRNA_H-elongata_contig8098.15757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8098.15757.1
Unique NamemRNA_H-elongata_contig8098.15757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 1.360e-112
Identity = 172/255 (67.45%), Postives = 205/255 (80.39%), Query Frame = 2
Query:    2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRYA 766
            +HTASRLAE GATVLVHGRRE++VR+AVE V   G    KVEG VAD+S+LRG N LCDEVL  T+RLDCL+NNAG++E + RHSDDG+E+TFAVNVLAPYVITGRLLDL+AKAP GGRVVNVAS  A+ S DFDNLQFEKGGY+ HA+Y+LSKLLDIM+ AELARRAP+G+TCN+L PG VNTKMLR GWG+GG  V++AND+F+LATS D+   +G++                EAC +LWRVLE+LSGF YA
Sbjct:   64 KHTASRLAEEGATVLVHGRRESAVREAVEHV---GGGKGKVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 218 bits (556), Expect = 1.110e-63
Identity = 117/256 (45.70%), Postives = 162/256 (63.28%), Query Frame = 2
Query:    2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRGV--TCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            RHT+ +LAE GA V+VHGR  A   + V+++K   +   K++ FVAD+S    ++ L D++  +   +DCLINNAG++EE  + + DG E TFAVNV AP+V+T RLL ++ K P G R++ V+S    +  DF+NLQFEKGGY+ H++Y+LSKL D M   E+A R   G   T N L PG VNTKML  GWG+ G  V  AN+EF LATS D++ + GK+F + + S     A   EA  +LW  LE  +G  Y
Sbjct:   74 RHTSKKLAETGARVIVHGRNTARCEETVQWIKDI-TGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGVFEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRP-GSRLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.190e-60
Identity = 119/263 (45.25%), Postives = 167/263 (63.50%), Query Frame = 2
Query:    2 RHTASRLAEAGA----TVLVHGRREASVRDAVEFVKGK----GSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARR-APRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            RHT  RLA   A    TV+VHGR  A    AV++V+ K    G    +VE  VAD+ST+RG+  L ++  AR  RLDCLINNAG++E++ + ++D +E TFAVNV+APY++T  LLDL+     G R++NV+S       +FDNLQF+ GGY+ HAAY+LSKLL +MY+ E A R     +T N+L PG VNTKML  GWG  G  V  A++EF LATS  ++ I G++F+ +  S+    A      ++L+ +LE ++G  Y
Sbjct:   95 RHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGVFEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLP-HKGSRIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPDLTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO)

HSP 1 Score: 206 bits (524), Expect = 1.190e-59
Identity = 119/259 (45.95%), Postives = 165/259 (63.71%), Query Frame = 2
Query:    5 HTASRLAEAGATVLVHGRREASVRDAVEFVK--GKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELA---RRAPRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRYA 766
            HTA RLA  GATVLVHGR    V  AV  V+  G GS  +   GFVAD+++L  + RL +EV A +  +D LINNAG++E+ LR S+DG E T+AVNV AP+++T  LL+ + +     RVV V+S  AA+S D+ NLQ E+G ++ H AY+LSKL + ++T ELA   R A   VTCN L PG VNTKML  GWG  G  V+ AN E   AT   +   +G++F+  +++ PP  AR      +LWR+LE+ +G +++
Sbjct:   22 HTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGVFEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKEANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTGAKWS 274          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7M7HP92_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HP92_STRPU)

HSP 1 Score: 202 bits (513), Expect = 4.350e-58
Identity = 109/254 (42.91%), Postives = 161/254 (63.39%), Query Frame = 2
Query:    5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPR-GVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            HTA +LA+ GATVLVHGR  A V   V  +K K +    ++G++AD++ L  + RL DE+ A  + +D LINNAG+YE+  + S+DG E TFAVNV+AP+++T  LLDL+ KA +  R+VNV+S   ++  D DNLQ +     G  AY  SKL DIM+T ++A R  + G+T N L PG VNT+ML   WG  G     A++EFHLAT    + +TG++F++ + +     A  ++   +LW+ L D++G +Y
Sbjct:   18 HTALQLAKTGATVLVHGRALARVEATVADIK-KATGNENIKGYIADLACLANIRRLSDELHASQKHIDVLINNAGVYEKKRQESNDGYELTFAVNVMAPFLLTSLLLDLL-KAGNKSRIVNVSSISQSSFLDLDNLQLKHDYGKGDKAYEQSKLCDIMFTIDMAERFRKDGITVNCLDPGTVNTQMLLKVWGAIGIPTDEADNEFHLATDAKFEDVTGEYFVDMRKTRASAVAYDNQLRGKLWKHLVDITGAQY 269          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7V5PMF2_9BACT (SDR family oxidoreductase n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5PMF2_9BACT)

HSP 1 Score: 200 bits (509), Expect = 1.700e-57
Identity = 111/256 (43.36%), Postives = 168/256 (65.62%), Query Frame = 2
Query:    2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAP-RGVTCNALHPGVVNTKMLRNGWGVGGNRV-QNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            +  A  LA AG  V++HGR+EA  +   +++  +  A  ++E  V D S+L+ + ++  E+  R + L+ L+NNAG+YE   R S+DG E TFAVN LA +++TG LL+L+       R+V V+S   A+  DFDNLQ E   Y+G+ AYALSKL +I++T ELARR   + V  N LHPGV++TK+L  GWGVGG  V Q A    +LATS +++ I+G++F + +++ P P AR+++A  +LW++ E L+GFRY
Sbjct:   17 KQAALELATAGHKVIIHGRQEARCQATADWISRQ--ADVRIEWVVGDFSSLQQVRQMAGEINRRFQHLNVLVNNAGVYEPQRRLSEDGYEITFAVNHLAHFLLTGLLLNLLFD-HSPARIVTVSSMAHASHLDFDNLQGETS-YSGYGAYALSKLANILFTFELARRLEGKPVQANCLHPGVISTKLLHAGWGVGGADVSQGAQMLVYLATSSEVENISGQYFSDYRITEPAPVARNEQAAKKLWQISEQLTGFRY 268          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP)

HSP 1 Score: 202 bits (514), Expect = 2.340e-57
Identity = 113/252 (44.84%), Postives = 161/252 (63.89%), Query Frame = 2
Query:    5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRG---VTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLS 751
            HTA++LA AG  VL+HGR    +++A+  ++   +  + VE F AD S+LR ++R   EVL + + LD LINNAG++ + +R ++DG E TF VNVLAP+++T  LL ++AKA   GRV+ V+S   ++  D+DNLQ EKG ++ H +Y+LSKL + M+  ELAR   R    V+ N L PG VNTKML  GWG  G  V +ANDEF LAT    + ++GK+F+  +      P     ACA+LWR LE L+
Sbjct:   80 HTATKLANAGYFVLIHGRDPVRIQEALRKIR-LSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQMRTTEDGNEMTFQVNVLAPFLLTKALLPIVAKA-QAGRVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO)

HSP 1 Score: 196 bits (499), Expect = 5.580e-56
Identity = 113/254 (44.49%), Postives = 155/254 (61.02%), Query Frame = 2
Query:    5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAP-RGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            HTA  LA  G +V+VHGR E  VRDAV  V+       KV  +  D S+L+ + RL D+V      +D L+NNAG+Y+E    S DG E T+AVNVLAP+V+T  L +++       RVVN AS  A +S D DNL  EKG ++ H AY+LSKLLDI+ T ELA R   +  T N L PG VNTKML  GWG  G  V++A DEF+++TS D++ ++G++F+ ++ +  P  A        LWR+ E  +G R+
Sbjct:   27 HTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNGKVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKELSQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVESA-DEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: UPI001BB1DC6C (retinol dehydrogenase 13-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DC6C)

HSP 1 Score: 196 bits (497), Expect = 1.010e-55
Identity = 105/254 (41.34%), Postives = 158/254 (62.20%), Query Frame = 2
Query:    5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPR-GVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            HTA +LA+ GATVLVHGR  A V   V  +K K +    ++G++AD++ L  + RL DE+ A  + +D LINNAG++EE  + S+DG E TFAVNVLAP+++T  + DL+ KA    R++NV+S   A   D DN Q +    +GH AY  SK+ +IM+T ++A R  + G+T N L PG VNT+ML   WG  G  V+ A++E+HL+T    + +TG++F+  + +     A   +   +LW  L D++G +Y
Sbjct:   18 HTALKLAKTGATVLVHGRAPAKVDATVADIK-KVTGNENIKGYIADLAHLASIRRLSDELHASYKHIDVLINNAGVFEEVRKESNDGYEMTFAVNVLAPFLLTSLIQDLL-KAGTKSRIINVSSISQATFLDLDNFQIKDNYGDGHKAYEQSKICEIMFTIDMAERFHKDGITVNCLDPGTVNTRMLLKSWGPVGIPVEEADNEYHLSTDAKYENVTGEYFVGMRKTRASTVAYDKKLREKLWNHLVDITGAQY 269          
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.320e-55
Identity = 117/258 (45.35%), Postives = 156/258 (60.47%), Query Frame = 2
Query:    2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGG---YNGHAAYALSKLLDIMYTAELARR-APRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
            RHTA++LA  GATVLVHGR +  +  AVE VK K S+  +V G +AD+STL GM  L   V   T  LD L++NAGI+E   R ++DG E  FA NVLAP+V TG LL L+ +A    RV+ V+S     +A   + QFE+ G   ++ H +Y+LSKL D M + E   R A   +T N L PG VNTKML  GWG+ G  V  AND++ LATS ++K ++GK+FI+ + +   P      A  QLW     +SGF Y
Sbjct:   24 RHTATKLATDGATVLVHGRNQERLAKAVEGVK-KQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR3_ECTSI1.360e-11267.45Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A6V2U0S1_HETAK1.110e-6345.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5E2_9STRA3.190e-6045.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2P6TE58_CHLSO1.190e-5945.95Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A7M7HP92_STRPU4.350e-5842.91Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
A0A7V5PMF2_9BACT1.700e-5743.36SDR family oxidoreductase n=1 Tax=Caldithrix abyss... [more]
A0A7S0QHA5_9CRYP2.340e-5744.84Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A061S8W3_9CHLO5.580e-5644.49Short chain dehydrogenase reductase family n=2 Tax... [more]
UPI001BB1DC6C1.010e-5541.34retinol dehydrogenase 13-like n=1 Tax=Lytechinus v... [more]
A0A835YNH2_9STRA1.320e-5545.35Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8098contigH-elongata_contig8098:563..3760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue8.6e-73
Seed eggNOG ortholog2880.D8LMR3
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009987,GO:0033554,GO:0050896,GO:0051716,GO:0071214,GO:0071470,GO:0104004
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1428
Cds size609
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931216.4178562-UTR-H-elongata_contig8098:562..7221622931216.4178562-UTR-H-elongata_contig8098:562..722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8098 563..722 +
1691679745.4221022-UTR-H-elongata_contig8098:562..7221691679745.4221022-UTR-H-elongata_contig8098:562..722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8098 563..722 +
1622931216.5055692-UTR-H-elongata_contig8098:3101..37601622931216.5055692-UTR-H-elongata_contig8098:3101..3760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8098 3102..3760 +
1691679745.4875102-UTR-H-elongata_contig8098:3101..37601691679745.4875102-UTR-H-elongata_contig8098:3101..3760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8098 3102..3760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931216.432197-CDS-H-elongata_contig8098:722..7891622931216.432197-CDS-H-elongata_contig8098:722..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 723..789 +
1691679745.432793-CDS-H-elongata_contig8098:722..7891691679745.432793-CDS-H-elongata_contig8098:722..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 723..789 +
1622931216.4460056-CDS-H-elongata_contig8098:1345..14021622931216.4460056-CDS-H-elongata_contig8098:1345..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 1346..1402 +
1691679745.4420183-CDS-H-elongata_contig8098:1345..14021691679745.4420183-CDS-H-elongata_contig8098:1345..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 1346..1402 +
1622931216.4588113-CDS-H-elongata_contig8098:1909..20401622931216.4588113-CDS-H-elongata_contig8098:1909..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 1910..2040 +
1691679745.451585-CDS-H-elongata_contig8098:1909..20401691679745.451585-CDS-H-elongata_contig8098:1909..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 1910..2040 +
1622931216.469906-CDS-H-elongata_contig8098:2231..24161622931216.469906-CDS-H-elongata_contig8098:2231..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 2232..2416 +
1691679745.466559-CDS-H-elongata_contig8098:2231..24161691679745.466559-CDS-H-elongata_contig8098:2231..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 2232..2416 +
1622931216.4850407-CDS-H-elongata_contig8098:2932..31011622931216.4850407-CDS-H-elongata_contig8098:2932..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 2933..3101 +
1691679745.4776871-CDS-H-elongata_contig8098:2932..31011691679745.4776871-CDS-H-elongata_contig8098:2932..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8098 2933..3101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8098.15757.1prot_H-elongata_contig8098.15757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8098 723..3101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8098.15757.1

>prot_H-elongata_contig8098.15757.1 ID=prot_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
MNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVI
TGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALS
KLLDIMYTAELARRAPRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNAND
EFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFR
YA*
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mRNA from alignment at H-elongata_contig8098:563..3760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8098.15757.1 ID=mRNA_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3198bp|location=Sequence derived from alignment at H-elongata_contig8098:563..3760+ (Himanthalia elongata Himel1 dioecious)
CAGGCACACGGCATCGCGCCTTGCCGAGGCGGGTGCGACTGTTCTCGTCC ACGGCCGCCGAGAAGCCTCCGTTCGTGACGCGGTTGAATTCGTCAAGGGC AAAGGAAGCGCAACTTCCAAGGTGGAGGGATTTGTGGCCGACGTGAGCAC TTTGCGCGGCATGAACCGCCTCTGCGACGAAGTCTTGGCTCGAACGGAAA GGCTCGACTGCCTCATCAACAACGCAGGCAGGCGCAATGTTGCTGTTATT GCTGCTGCTGTTCGGGGTTTTCTTTGATATGTTCTTTTTTTTTGCTTCCT ATAACAAGGAAGTTATTCCTCGCTGGCCGACCGCGATACTCTGTAGTGAA CACATCATGTTTCTTTTTTTCTCGTGGGCTTGCGCCCGTAAAAACAATTA TCAGGTGCATTTCATCGCGAAGTTCATGGGAGTGACATATAATCGACCCA ATTGTAGAACCGTTACACGAATGAGTTGACCTTCGTATACATTGGTTACA TCCCAGGAGACCCATGTCTGAATATATCACGTGCTGCGTACTGACGCACG CCTGCGATCGTAAGATGTCGAAGCGACAACATGCATGTACCTAACGTTGT GAACAACTAAGTGTAATCCTGTGTCTTACGCAGTCAATATAACATTACCG TATATTTCACTTCTCGGGTATCCATGAGGTATGCCAGAACGAACCAGCTA GTGCAATTCAGCCTGTGCGATGTGGCGCATGTTTGTAGCTCATTGCTATT GCTGTACACACTTCGATCCCTCGGCCGCAACAGGAATTTACGAAGAGAAT TTACGCCATAGCGACGACGGGGTGGAGTTCACCTTCGCAGGTGAAACGCT AACACGCGTTTAAGCTTTGCCGGTGGAAGACTTCGAGTCCCCGATTGTTC AAAGGTTCTCGTGCGAGAGCCCCGCGGAAAGTGTGTATTCCCCGGGTGTC CGAGGAACCTTTTCTCGACCTGCGATCTGGGATCTGTTTGGAGGTTGACA ATTGGTTTCTACAACTCAGCATAAATCATGCCCCCGTGCAGGGGTATAAC GAACAACACCACCCTCCGGTGGTGGTGCGACGCTGTGGATATCTTCGTAT CCAAACGAACTTGCCTACCTTCGTAGCAAAATCGAACTTTACCGCGGAAA ACAGTCGGCGACGCAACGGTAACAGACACATACGTTCGGGAAGTAACGGT AACCGTTGCACACGTTCGGACAACATTTGCCAATCTTCTCTCTCGATCTA ACCGTGCCCGAGGAGCTGCCTGGTGTCCCGCTCCCGTTCTCGAGGCATAG CACGCACGCGACTTCCTTCCTTTCTTATGATTCCCTTGGTATAACAGTTA ATGTATTGGCGCCATACGTGATCACGGGTCGTCTCCTGGACCTGATCGCC AAGGCACCGGACGGGGGCCGCGTGGTGAACGTCGCGAGCCATGTGGCGGC AAATTCTGCCGACTTTGACAACCTGCAGGTAGGTGACGACCCTCCCGGGG GGAGTTCTTTGGCACGGGCAAGAAACTTACGCCGATAGTCGTGAGGGATA CATATATAATATACAGTATATATATTATATATATATATATATATATATAT ATATGCCGCCGAAACATATGCGATGCTGCGAAGGTCTCAACGTTTGCCCG TCGTCGTTCCGCGCGGTAGTTCGAAAAGGGGGGTTACAACGGCCACGCCG CGTATGCCCTGTCAAAGCTTCTGGACATCATGTACACCGCAGAGCTCGCC AGAAGAGCTCCCAGAGGGGTCACCTGCAATGCCCTCCACCCTGGCGTCGT GAACACCAAGATGCTTCGGAACGGATGGGGTGTCGGCGGAAATCGCGTCC AAAAGTGAGACATACCTTCTGTTGATAGGAGGAAATGAAGAGACTCGCGA GTCAATCACGTTCTTCGACGGGGGGTATATTTATGGTGCATGTAAATAAT CGTCCAGTCGGGGTTTTCTTCTTTTCTGAACCAAGCGCACGCTTTTCTCG TTGTAAGGTGCCGAGCATGTCGTCACGCGAGGCGTTTTTATTTTATTTTA CCACGATCGGTTTTATGCCTTTGAGTGACAGTACGGCACGATACCCTCAC TCGTATCCCGCATTACTTGCCGTGCACAATTTTGCGGTACATGATTGTGA CATCGACCGATACGATCTGCTCGAATATTTTGCCTGAAGTTTGAGCGTGA TTCCCCATTGCCGCGGGTAGTGCGTACTAGAGCAATGACAAAATATTAGA ATGACAGTCGTTGCCCCCCCCTCCCTCCAAATGGAAGTATTGATATATTT ATACCAACATGAGATCGTAAAAAGACTAATACATACAGTGTGCCACTCTC TTCTCTGTGGACCCATCCAGTGCTAACGACGAGTTCCACCTTGCGACAAG CGGCGACATCAAGGCTATTACAGGAAAATTCTTCATCAACCGCAAGTTGT CCACCCCTCCGCCTCCAGCTCGGAGCGACGAGGCTTGTGCTCAGCTGTGG AGGGTGCTAGAAGATCTCAGCGGTTTTCGATACGCGTAATGGCGTAGGTA CTCGCTTTTACTTTTCGGCTTCTTGAGGTGTACAGTCCCGTTTTCTCTCC CAAAACGTGAACAGCTGTAGGGTGTACGTTCGGAAAAGTTTAGAGAAGTC TAGACGTACCGTTTCGAGCGAGTATTGGTCAATTTGACAGGAGGAGGATA CCACGCGGTGTGCATAGGGTTTTAGCTCAGTCTAAGTCATTCACCCCTCT GCCTCGAGTGGAGTTTGCAATAATTCACACTGCTGTCGTACATTTGGATT ATTTCCTGGAGGTTTGAAAACAGACATAAGAGAGCGCGTGTCGGTTCTTC TTGAGCAATTGGGATACACGTCGATAGCATACTGGTCTCTATCGATACCG GTGAAGTGGCGAGAGTTTATATGCAGTATGCTGCGACTTACTTCTGCACG AATCGCGAAAGAATGTTTGGTTTCGTTGATTACCACACGCAAGACAGGAC TGGTACGGGTCGGTTCTGGTAGATAACGCGCGCTTTTGAGGTCACTGACC ATGCTGTGTACAGATTCTTACGAGGGGGGTTTTGCAGTAGCAGCATTAAC ACCACGATTATTGTTGTTGAGGTCCAAACCGATTCACCGCGATGCGCATG CGAAGCTGATCACCGACAAACAACGCGGAAAGGGATTACGAATTACGC
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Coding sequence (CDS) from alignment at H-elongata_contig8098:563..3760+

>mRNA_H-elongata_contig8098.15757.1 ID=mRNA_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig8098:563..3760+ (Himanthalia elongata Himel1 dioecious)
ATGAACCGCCTCTGCGACGAAGTCTTGGCTCGAACGGAAAGGCTCGACTG
CCTCATCAACAACGCAGATGAACCGCCTCTGCGACGAAGTCTTGGCTCGA
ACGGAAAGGCTCGACTGCCTCATCAACAACGCAGGAATTTACGAAGAGAA
TTTACGCCATAGCGACGACGGGGTGGAGTTCACCTTCGCAGGAATTTACG
AAGAGAATTTACGCCATAGCGACGACGGGGTGGAGTTCACCTTCGCAGTT
AATGTATTGGCGCCATACGTGATCACGGGTCGTCTCCTGGACCTGATCGC
CAAGGCACCGGACGGGGGCCGCGTGGTGAACGTCGCGAGCCATGTGGCGG
CAAATTCTGCCGACTTTGACAACCTGCAGTTAATGTATTGGCGCCATACG
TGATCACGGGTCGTCTCCTGGACCTGATCGCCAAGGCACCGGACGGGGGC
CGCGTGGTGAACGTCGCGAGCCATGTGGCGGCAAATTCTGCCGACTTTGA
CAACCTGCAGTTCGAAAAGGGGGGTTACAACGGCCACGCCGCGTATGCCC
TGTCAAAGCTTCTGGACATCATGTACACCGCAGAGCTCGCCAGAAGAGCT
CCCAGAGGGGTCACCTGCAATGCCCTCCACCCTGGCGTCGTGAACACCAA
GATGCTTCGGAACGGATGGGGTGTCGGCGGAAATCGCGTCCAAAATTCGA
AAAGGGGGGTTACAACGGCCACGCCGCGTATGCCCTGTCAAAGCTTCTGG
ACATCATGTACACCGCAGAGCTCGCCAGAAGAGCTCCCAGAGGGGTCACC
TGCAATGCCCTCCACCCTGGCGTCGTGAACACCAAGATGCTTCGGAACGG
ATGGGGTGTCGGCGGAAATCGCGTCCAAAATGCTAACGACGAGTTCCACC
TTGCGACAAGCGGCGACATCAAGGCTATTACAGGAAAATTCTTCATCAAC
CGCAAGTTGTCCACCCCTCCGCCTCCAGCTCGGAGCGACGAGGCTTGTGC
TCAGCTGTGGAGGGTGCTAGAAGATCTCAGCGGTTTTCGATACGCGTAAT
GCTAACGACGAGTTCCACCTTGCGACAAGCGGCGACATCAAGGCTATTAC
AGGAAAATTCTTCATCAACCGCAAGTTGTCCACCCCTCCGCCTCCAGCTC
GGAGCGACGAGGCTTGTGCTCAGCTGTGGAGGGTGCTAGAAGATCTCAGC
GGTTTTCGATACGCGTAA
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