mRNA_H-elongata_contig80902.15747.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.380e-47 Identity = 98/269 (36.43%), Postives = 152/269 (56.51%), Query Frame = 1
Query: 40 SIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKT-SIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYEGEPG 840
SIR+VLS++ A+ + QLD D A+ +D+ E++++E+P + + L KA+YGL A W + F GF+ D CV+ ++ V V + YVDD+++A+ T + + L S F +K+LGEA + LG I DR GTL Q +Y+ V RF ++V G LSK+ SP TDAE E+MR PY+ ++G+L ++ T T PD+++ Q ++ +NPG HW+AA + L+YL T++ GI Y G G
Sbjct: 3 SIRVVLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVCL-YVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNG 270
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI) HSP 1 Score: 176 bits (446), Expect = 2.840e-47 Identity = 105/280 (37.50%), Postives = 163/280 (58.21%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTS--IVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
Y+E+ SP + S+R+V++M+A E Q+DV A+L ++ EE++++ P+ + K+ V LKK++YGL A W KF + GF+ + D C++ +I G +++V+YVDD+L+A+ +Q L F +KD+GEASY +G I+ DR+ G L Q YI V ERF + K S IVP +G+ S + P+ + E ++M QIPY IVG+L + T T P ISFA + NPG HW+AA+K L+YL T++ +TY+
Sbjct: 44 YKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVP-IQKGDKFSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTYK 321
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH) HSP 1 Score: 178 bits (451), Expect = 1.940e-45 Identity = 100/280 (35.71%), Postives = 161/280 (57.50%), Query Frame = 1
Query: 1 HYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGV-TKTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
++ E+ SP + S R++++++A E Q+DV A+L ++EE I++ P+ + + K+ V LKK++YGL A W KKF + GF + D CV+ +++ G + +++YVDD+L+AS+ + K L S F +K+LGEASY LG I DR G L Q YI + +RFG+ T + ++G+ L+K+ P+T+ E EM IPY +VG+L + T PD+SFA ++ NPG HW A +K L+YL RT++ + Y+
Sbjct: 327 YFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDKLTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVYK 605
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY) HSP 1 Score: 178 bits (451), Expect = 2.270e-45 Identity = 105/278 (37.77%), Postives = 159/278 (57.19%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
Y+E+ SP ++ S R+V++++A E Q+DV A+L D+ E++Y+ PD + K+ V LKK++YGL A W KF + GF+ + D C++ +I G ++ +V+YVDD+L+AS ++ L F +KDLGEAS+ LG I DR+ G L Q YI V ERF ++ + + +G+ LSK PQ D E EM++IPY VG+L + T PDI+FA + +PG HWRAA+K L+YL RT++ +TY
Sbjct: 358 YKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 634
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A438BZI3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZI3_VITVI) HSP 1 Score: 176 bits (445), Expect = 3.380e-45 Identity = 105/283 (37.10%), Postives = 158/283 (55.83%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGV-----TKTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
++E+ SP + S R++++++A E Q+DV A+L D+ EE+Y+E P + + K+ V L K++YGL A W KF GF+ + D C++ R+ G + +V+YVDD+L+AS + L + F +KDLGEASY LG I DR G L Q YI+ + +RF + TK IV +G+ SK+ PQ D E EEM+ IPY +VG+L + T PDI+F + NPG HW+AA+K L+YL T++L +TY+
Sbjct: 202 FKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQWYLKFDKIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKFTKAPIV----KGDKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQ 479
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT) HSP 1 Score: 178 bits (452), Expect = 3.910e-45 Identity = 100/277 (36.10%), Postives = 161/277 (58.12%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVT--KTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
Y E+ SP +S+R + ++ A + Q+D A+L+ D+ EEIY+ P Y + LKKA+YGL A +W +K + ++ GFQ+S DTCV+ +I G +++I +YVDD+++ S K+ L F +KD+G+A + LG IT ++ TL DQ YI+ + +FG++ K S P + LSK+DSP AE+E+M+Q+PY+E +G L +++ T PDISF ++ ++ N+NPG HW A + +YL T + +TY
Sbjct: 961 YAETYSPVVRHSSLRYLFALAAKHNLQVHQMDAVTAFLQGDLSEEIYMRQPPMYSTDNSKCCRLKKALYGLKQASRVWNRKLDEKLKSLGFQQSTYDTCVYFKI-EGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITETKSCITL--DQQHYIEEILNKFGMSECKPSYTPMQ-HNQKLSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRYLRGTSSYNLTY 1233
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY) HSP 1 Score: 178 bits (452), Expect = 4.040e-45 Identity = 105/278 (37.77%), Postives = 160/278 (57.55%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
Y+E+ SP ++ S R+V++++A +E Q+DV A+L D+ E++Y+ P+ + K+ V LKK++YGL A W KF + GF+ + D C++ +I G ++ +V+YVDD+L+AS ++ L F +KDLGEAS+ LG I DR+ G L Q YI V ERF ++ S + +G+ LSK PQ D E EM++IPY VG+L + T PDI+FA + +PG HWRAA+K L+YL RT++ +TY
Sbjct: 560 YKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 836
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A182GNA3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNA3_AEDAL) HSP 1 Score: 171 bits (432), Expect = 5.590e-45 Identity = 100/263 (38.02%), Postives = 151/263 (57.41%), Query Frame = 1
Query: 55 LSMIAALGWEARQLDVDMAYLEADV--EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPSAA-RGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYEGE 834
+++ A LG + QLD A+L+ D+ EEIYVE P+ + P QV LKKA+YGL A +W KK G Q+S+ D+CV+ ++ G ++++ VYVDD+LV + L F +KDLG A LG +T + G + DQ +YI+ + ERFG+ + V + + LSK SP++ +VE M +P+RE+VG L +VA T PDI+FA + + N NPG HW AA++ L+YL T+++ + Y E
Sbjct: 1 MAVAARLGLKIHQLDAVTAFLQGDLMDEEIYVEQPEGFAIPGGQVCRLKKALYGLKQASRVWNKKLDNVLREIGLQQSKMDSCVYF-LIDGDKILIVAVYVDDMLVFANDDEIVDALKQQLMVRFQMKDLGYAEQILGMRVT--QVDGRITLDQEKYIEQLLERFGMNDCNPVSTPFDASQKLSKEMSPKSPDDVERMANVPFRELVGGLQFVAQCTRPDIAFAVNAVSSFNSNPGEAHWTAAKRILRYLKGTKDMKLIYSSE 260
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY) HSP 1 Score: 177 bits (448), Expect = 1.220e-44 Identity = 104/278 (37.41%), Postives = 159/278 (57.19%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
Y+E+ SP ++ S R+V++++A +E Q+DV A+L D+ E++Y+ PD + K+ V LKK++YGL A W KF + GF+ + D C++ +I G ++ +V+YVDD+L+AS ++ L F +KDLGEAS+ LG I DR+ G L Q YI V ERF ++ + + +G+ LSK PQ D E EM++IPY VG+L + T PDI+FA + +P HWRAA+K L+YL RT++ +TY
Sbjct: 716 YKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTY 992
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH) HSP 1 Score: 172 bits (436), Expect = 1.460e-44 Identity = 100/280 (35.71%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPSAA---RGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
Y+E+ SP + S+R++++++A E Q+DV A+L ++EE +++ P+ + K+ V LKK++YGL A W KF + GF+ + D C++ ++ G + +++YVDD+L+AS+ + L F +KD+GEASY +G I DR+ G L Q YI+ V ERFG+ K S PS A +G+ S PQ + E + M +IPY VG+L + T T PDISFA + NPG HW+A +K ++YL T+ +TY
Sbjct: 97 YKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCS--PSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80902.15747.1 >prot_H-elongata_contig80902.15747.1 ID=prot_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp MVLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPRKQVGLLKKback to top mRNA from alignment at H-elongata_contig80902:749..2051- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80902.15747.1 ID=mRNA_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1303bp|location=Sequence derived from alignment at H-elongata_contig80902:749..2051- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80902:749..2051- >mRNA_H-elongata_contig80902.15747.1 ID=mRNA_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig80902:749..2051- (Himanthalia elongata Himel1 dioecious)back to top |