mRNA_H-elongata_contig80898.15746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80898.15746.1
Unique NamemRNA_H-elongata_contig80898.15746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 4.490e-55
Identity = 164/410 (40.00%), Postives = 226/410 (55.12%), Query Frame = 3
Query:  207 MADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIR-LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLL-GQGMEAIGAVRAVGRVAFKVVS--EGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWP----------TCYATTKNASNG 1394
            ++ T A  + +  LA +L   +R RN    E  L  GASV GS E+   P+I AA +G+  M  LL+ R A+ D     ++     +  L +G R+L+VA+   H++  R+LL+AGA+P++ + +G TPLM+ C   L D A    R      XXXXXXXXXXXX    TA+ FAA  +  DL+DI+L+ AP+TL+R + +G TPL  AA +G  ++VS LLSAGA         +M   CPL AAV   H EVVRVLL  +GMEAI     + R      S  +GRA+I+RM+L A G E+    +  ++    +L  AV+  ++S  RVLLA GA ETA +  G+   ++V  N P  + DP    AI  ML R PA  ARSW WP          TC A    A+ G
Sbjct:  105 LSTTMARSVTKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCI--LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDM---CPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWPATARAYTAGHTCAAAATTAAPG 509          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 7.630e-55
Identity = 163/417 (39.09%), Postives = 228/417 (54.68%), Query Frame = 3
Query:  186 RRFDEETMADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIR-LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLL-GQGMEAIGAVRAVGRVAFKVVS--EGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWP----------TCYATTKNASNG 1394
            R  +   ++ T A    +  LA +L   +R RN    E  L  GASV GS E+   P+I AA +    M +LL+ R AD D     ++     +  L +G R+L+VA+   +++  R+LL+AGA+P++ + +G TPLM+ C   L D A    R      XXXXXXXXXXXX    TA+ FAA  +  +L+DI+L+ AP+TL+R + +G TPL  AA +G  ++VS LLSAGA         +M   CPL AAV   H EVVRVLL  +GM+AIG    + R      S  +GRA+I+RM+L A G E+    +  ++    +L  AV+  ++S  RVLLA GA ETA +  G+   ++V  N P  + DP    AI  ML+R PA  ARSW WP          TC A    A+ G
Sbjct:   90 RSLEPSPLSTTMARSATKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCI--LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDM---CPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAWPATARAYTAGHTCAAAATTAAPG 501          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.760e-42
Identity = 152/416 (36.54%), Postives = 215/416 (51.68%), Query Frame = 3
Query:  255 RLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIIS-------PFEIRLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGA-SNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMN-TSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLW-------PTCYATTKNASNGEEKAILYVRISRSKNRDLYA 1454
            RL   V   +++ A ++L  GA+  G+ E    PL +AA  G   ++KLL+D GAD D     +  +       PFE     GT  L+ A+  E+L+A R+LL AGA+PN  D +G TPLM+ C      +   +   T  XXXXXXXXXXXXXX    TA+H AA  N  DLL ++L  APST++  +  G T L  AA  G   +VS LLSAGA  N S+F     +    L  AV+ GH++VVRVLL +G++A+G   A+     + + +    IL+M+LD  GE++R + +  +  + T  L  A A   L    +LL  GA E   +   K     V A  P +K +P  + A+C +L+R PA  ARSW W       P    T  +   G  +A L VRI R      ++
Sbjct:    9 RLLHHVEKGSLQGAIEMLKAGANADGTSEAATSPLFLAANRGRIDILKLLIDNGADLDGTSSLDKFADGFTGNLPFE----GGTTPLHGALAGENLDALRLLLLAGADPNLADGKGCTPLMMTCLKYFRAKNYVL---TAXXXXXXXXXXXXXXXXXXXTALHVAATFNAPDLLGLLLSRAPSTVNLPNKKGVTALCYAASEGMEVAVSCLLSAGARDNPSLFA----NGIGSLLIAVELGHEQVVRVLLDRGVQAVGGELAMSYALRRSILKRFPRILQMLLDVEGEQKRVKWARLRHTDGTPALHLAAACESLVAASILLQAGADEGTANGLDKGASCCVGAALPANKKNPDTSAAVCRLLERGPAFRARSWAWAAESSEAPAASGTVCSMKGG--RATLDVRIFRPTGNQFFS 411          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.030e-36
Identity = 107/323 (33.13%), Postives = 169/323 (52.32%), Query Frame = 3
Query:  258 LTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIRL-ARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACD 1223
            L + ++G    + E L L GAS+ G  +I+  PL  AA  G A ++ LL  RGA+ +    +++     + + + G+ +++ AV    +++ R LL+AGA+PNA D  G+TPLM  CR        A  R   +                G  A+H+A+  +D D++ ++L  A +TL++ +  G TPL  AA  G  ESV  LLS GAS+ +++       A  L  AV  G  E+VR+LL  GM+A+G + AV +  +    +G A IL M+L   GEE R Q +   +  ++LL  A +   LS++  +L+ GA E A D
Sbjct:   10 LVEVLKGNERGVEEQLDL-GASLDG-FDIW-KPLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACR-----LFGAADRYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKG---ASALVGAVQEGRQEIVRILLDHGMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAGADERARD 321          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 9.070e-26
Identity = 101/332 (30.42%), Postives = 153/332 (46.08%), Query Frame = 3
Query:  303 LLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPF----EIRLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQRE--------------QLSASKFMNTSLL-------QRAVANRDLSIVRVLLAFGAAETACD 1223
            +L EGASVH   +  V P+ VA + G   ++K L+  GAD +     +    +    E     G  +LY+A  + +  A  +LL+ GANPNATD +G TP+MV C    V      +++T +                G  A+H AAG  D  ++ ++L  APSTL+  + NG TPL  AAE GN  ++S L S GAS+   +    +     L  AV  G    VR LL  G++A+G +  +       V  G  + L M+L+  GE+++E               L +  F  T++L         A  +  +  + VLL+ GA    CD
Sbjct:    1 MLEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTS----TKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGIT---ALHKAVIVGMGTSVRFLLENGLDAVGGLPGIAEAIRISVWFGCIDGLEMLLNVHGEKKQEFWAKHYVFGVQDDSLLGSVPFSITAILCEWYPILHYAAKHYSIPALHVLLSAGAIPETCD 325          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.420e-25
Identity = 114/412 (27.67%), Postives = 188/412 (45.63%), Query Frame = 3
Query:  363 VAAETGNAKMMKLLLDRGA-------DPDQCIRKEIISPFEIRLARGTRSLYVAVLM-EHLNATRMLLEAGANPNATDVEGNTPLMVLCR----GRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFK-VVSEGRANILRMILDAVGEEQREQLSASKF-MNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIV----LANEPKDK---------SDPKNTYAICSMLDRAPALLARSWLWP-----------------TCYATTKNASNGEE-KAILYVRISRSKNRDLYAKIL 1463
            +AA     ++ +LL++RGA       +P    R+ +++   + + +G  + + A+   + ++   +LL AGA+P+A +  G TPLM L R    G  ++ A        L                G+TA   A    + + +  +L  +P+ L R++W+G + L +A   G+   VS LLS GA +       +    CPLA A+ +GH+++V++LL   + A+G V     +A    +++ R  ILRM+L+  GEE   + + S + +  SLL  +      + V  LLA GA E A D  G+  +D++    L N P             DP     I   ++RAPA  ARSW WP                 TC   TK +  G + +  L V+I R +   L + IL
Sbjct:    1 MAAVHAQTEIAQLLIERGAHVNAGVTNPSMGTRERVVNSTFLPM-QGENAFHAAICFAKKMDLVDLLLRAGADPSAGNKLGITPLMCLAREEPPGPWLECA--------LEVLIKAGVNPDQVDAEGWTAFLHAVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLSVVSCLLSLGAKHPRTTIRDH----CPLAVAIIKGHEDIVKILLAN-LSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWADSDWGLAGSLLHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAWPAFEWAGCSTTAAICGSSTCNGLTKASGQGRKTRTPLVVQIHRPERNKLLSGIL 398          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.720e-16
Identity = 65/212 (30.66%), Postives = 103/212 (48.58%), Query Frame = 3
Query:  468 RLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQR 1103
            ++ +G   +  AV++  + A + +L AGA+PN  D  G   L V C     +R   I R                      +A+H AA     +L   +L  AP+TL+ V+  G TPL  A   G  ++V+ LLS GAS++ VF+         L  AV  GHD ++ +LLG+G+EA+G + ++       V++ R   L ++L   GEE+R
Sbjct:   12 KIPKGLGLVSAAVIVRRIPALQCVLRAGADPNTPDGVGCNALQVACFDGDDERRLCIVRELLKWGANPNLRGGPYG-----SALHTAAKEGHTNLFTTLLAAAPATLNLVNEQGLTPLGTATSFGRHKAVTCLLSLGASDRQVFQETRSG---SLQEAVVAGHDTLLSLLLGKGLEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGEERR 215          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D7FVH7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.130e-14
Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 3
Query:  390 MMKLLLDRGADPDQCIRKEIISPFEIR--LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSV-FELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIG 1004
            M++ LL+ GAD +      +    + R  L +G R+++VAV+       ++L++AGAN + T   G TPLM  C+ R+ +    + +                     +  + +A     +  +  +L  AP+T+++V+ +G+TPL MA+  G  E+VS LLSAGA    + FE       CPL  AV +   +VVRVLL  G+ AIG
Sbjct:    1 MIECLLNNGADVNAASPLMLHQGEDGRMSLCQGVRAIHVAVIHHDRKCLKVLIDAGANLDVTYSGGVTPLMAACKMRVEEHGIEMVKEVIEAGANPLIQDNKR-----WACLWYAINLGRIRTIQTILSVAPTTVNQVAPDGSTPLYMASGFGQYEAVSLLLSAGAKQTRLSFEKGK----CPLDVAVRQNRTDVVRVLLSDGLHAIG 199          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LME8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-10
Identity = 62/204 (30.39%), Postives = 89/204 (43.63%), Query Frame = 3
Query:  753 LDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMNTS-LLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWPT 1361
            +D++LR APS LD+    G TPL  A + G+  SVSRLLSAGA++        + FA  LA   D+                                   A IL+M+L AV   + +    ++ +N+  LL+ A  +       VLLA GA ET     G+   D++    P  + DP+   AI  ML +     +RS  WPT
Sbjct:    1 MDLLLRVAPSRLDQADNYGVTPLCCAVQGGHENSVSRLLSAGATS--------LRFAMELAVRFDQ-----------------------------------ARILKMLLTAVHAGESDGPGVAEVVNSGPLLRLAALHGHPGATHVLLAAGADETRETDRGERARDLIGIFVPDCERDPEKEAAIGRMLQQGAVFRSRSLAWPT 161          
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LSL4_ECTSI (Ion channel nompc n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.620e-10
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  741 DVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLG--QGMEAIGAV 1010
            D + + ++L  APST++R +  G TPL +A E G A+ VSRLLSA A++K +         CPLA A   GH+ VVRVLLG  + ++A G V
Sbjct:    4 DTESITLLLEAAPSTMNRATKGGMTPLCVACEFGQAQVVSRLLSAEATSKWM--------PCPLATATANGHESVVRVLLGTKERIKAFGGV 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSC7_9PHAE4.490e-5540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI7.630e-5539.09Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LDZ2_ECTSI7.760e-4236.54Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JAW5_9PHAE6.030e-3633.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMA9_ECTSI9.070e-2630.42Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FLL0_ECTSI8.420e-2527.67Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LME7_ECTSI5.720e-1630.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVH7_ECTSI1.130e-1431.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LME8_ECTSI1.190e-1030.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSL4_ECTSI6.620e-1044.57Ion channel nompc n=1 Tax=Ectocarpus siliculosus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80898contigH-elongata_contig80898:1112..2877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue4.3e-50
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size1766
Cds size1266
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80898.15746.1prot_H-elongata_contig80898.15746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80898 1318..2583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.2009723-UTR-H-elongata_contig80898:1111..13171622931215.2009723-UTR-H-elongata_contig80898:1111..1317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80898 1112..1317 +
1691679744.938249-UTR-H-elongata_contig80898:1111..13171691679744.938249-UTR-H-elongata_contig80898:1111..1317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80898 1112..1317 +
1622931215.2522538-UTR-H-elongata_contig80898:2583..28771622931215.2522538-UTR-H-elongata_contig80898:2583..2877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80898 2584..2877 +
1691679744.9697788-UTR-H-elongata_contig80898:2583..28771691679744.9697788-UTR-H-elongata_contig80898:2583..2877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80898 2584..2877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.2221494-CDS-H-elongata_contig80898:1317..25831622931215.2221494-CDS-H-elongata_contig80898:1317..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80898 1318..2583 +
1691679744.9573078-CDS-H-elongata_contig80898:1317..25831691679744.9573078-CDS-H-elongata_contig80898:1317..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80898 1318..2583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80898.15746.1

>prot_H-elongata_contig80898.15746.1 ID=prot_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=422bp
MADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPP
LIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIRLARGTRSLYVAV
LMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFL
RVLLDAGANPLLVQIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWN
GTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGH
DEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQRE
QLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVL
ANEPKDKSDPKNTYAICSMLDRAPALLARSWLWPTCYATTKNASNGEEKA
ILYVRISRSKNRDLYAKILRG*
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mRNA from alignment at H-elongata_contig80898:1112..2877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80898.15746.1 ID=mRNA_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1766bp|location=Sequence derived from alignment at H-elongata_contig80898:1112..2877+ (Himanthalia elongata Himel1 dioecious)
AACTCCTCGCGCCAAGTCGATCACAGATGATCTGAGGCCGGCATTATCTT CTTGAGTTCGAAGGATATACGAAGCATAAATTACCATGTGGCACCCTGAT TTTGTTTCTATCTAAAACAGAGTAAATCTACTATTATTGTGCTTGTTTCA GCGACTTGTGGTGTGAGCTTTACGTACGAAACGTAAGGCGCTTTGACGAA GAAACCATGGCCGATACTGAGGCAGCTCGTCTTCGTGAGAAAGACTTGGC AACGAGACTCACTGACGCCGTGAGAGGCAGAAACATTAAAATTGCTGAAG ATTTGTTGTTGGAAGGTGCGAGCGTGCACGGGTCGGTAGAAATATATGTC CCCCCACTCATTGTTGCCGCTGAGACCGGCAATGCCAAGATGATGAAGTT ACTCCTTGACCGAGGCGCTGATCCCGACCAATGCATTCGGAAAGAAATCA TCAGTCCCTTCGAAATCCGTTTGGCGAGGGGGACGCGATCCCTATACGTC GCCGTGTTGATGGAACATCTAAATGCAACCCGAATGTTACTGGAGGCTGG CGCCAATCCTAATGCCACCGATGTCGAGGGAAACACTCCTCTCATGGTGC TATGTCGGGGAAGGCTCGTGGATAGAGCTACAGCGATATCGAGAATTACT TTTCTTCGAGTCCTGTTGGATGCAGGAGCAAATCCCCTCTTGGTCCAGAT CTTCGGTTTCACCGCGATGCACTTTGCGGCGGGAAGCAACGATGTCGATC TCCTGGACATCATGTTGAGGACGGCGCCATCAACTCTAGATCGTGTCTCG TGGAACGGCACGACGCCTTTGCTCATGGCAGCTGAAGCTGGAAATGCGGA GTCTGTATCCCGCCTGCTTTCGGCCGGAGCAAGCAACAAGTCGGTGTTCG AGCTGCCCAATATGGATTTCGCGTGCCCTCTGGCAGCCGCTGTGGACCGA GGCCACGACGAAGTTGTTCGCGTTTTATTGGGCCAAGGAATGGAAGCGAT CGGAGCGGTCCGAGCCGTTGGCCGTGTTGCGTTCAAGGTTGTGAGCGAAG GACGAGCGAATATCCTTCGGATGATTCTTGACGCGGTGGGAGAGGAGCAG CGGGAACAGTTGTCGGCGTCAAAGTTCATGAACACTTCCCTGCTCCAAAG AGCCGTTGCGAACAGAGATCTTTCCATAGTAAGAGTTCTCCTCGCATTCG GCGCGGCTGAGACGGCGTGCGACGCGTACGGAAAGCTCATGATGGATATT GTTCTGGCCAATGAGCCTAAAGACAAGAGCGATCCGAAGAACACGTACGC AATCTGTAGCATGTTGGACCGGGCCCCAGCGCTCCTCGCTCGATCTTGGC TTTGGCCAACCTGTTATGCCACCACCAAGAACGCATCCAACGGAGAAGAG AAGGCGATATTATATGTGCGGATCTCGCGTTCGAAGAATCGCGACTTGTA CGCGAAAATATTGAGAGGGTGAGTGAGGGTGTAGCGCACGCGTGGGCGTC TTTCGCAGTCAAGCAAAAGCGATATACCCTCGGTTTCCGTACGGATCTAG GACATAGCCCAATCAAAGAAGCCTCGCATCATCTGCGTTGTTGTACGATT CCCTTCGCGCTCCGCCCGCTGGCCATCCTTCGAGATTACTTCCCCCATAG ATCGTTTTGTGCTGAGTTTTCGTGCGACGAGGGACGGTAAAATCGGCGGT GGTTTACAGCAGTGACGTAGCTTCATTGTAAGCGCGACTTTTTTTATTAG AAGGGGGTGACATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig80898:1112..2877+

>mRNA_H-elongata_contig80898.15746.1 ID=mRNA_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2532bp|location=Sequence derived from alignment at H-elongata_contig80898:1112..2877+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGATACTGAGGCAGCTCGTCTTCGTGAGAAAGACTTGGCAACGAG
ACTCACTGACGCCGTGAGAGGCAGAAACATTAAAATTGCTGAAGATTTGT
TGTTGGAAGGTGCGAGCGTGCACGGGTCGGTAGAAATATATGTCCCCCCA
CTCATTGTTGCCGCTGAGACCGGCAATGCCAAGATGATGAAGTTACTCCT
TGACCGAGGCGCTGATCCCGACCAATGCATTCGGAAAGAAATCATCAGTC
CCTTCGAAATCCGTTTGGCGAGGGGGACGCGATCCCTATACGTCGCCGTG
TTGATGGAACATCTAAATGCAACCCGAATGTTACTGGAGGCTGGCGCCAA
TCCTAATGCCACCGATGTCGAGGGAAACACTCCTCTCATGGTGCTATGTC
GGGGAAGGCTCGTGGATAGAGCTACAGCGATATCGAGAATTACTTTTCTT
CGAGTCCTGTTGGATGCAGGAGCAAATCCCCTCTTGGTCCAGATCTTCGG
TTTCACCGCGATGCACTTTGCGGCGGGAAGCAACGATGTCGATCTCCTGG
ACATCATGTTGAGGACGGCGCCATCAACTCTAGATCGTGTCTCGTGGAAC
GGCACGACGCCTTTGCTCATGGCAGCTGAAGCTGGAAATGCGGAGTCTGT
ATCCCGCCTGCTTTCGGCCGGAGCAAGCAACAAGTCGGTGTTCGAGCTGC
CCAATATGGATTTCGCGTGCCCTCTGGCAGCCGCTGTGGACCGAGGCCAC
GACGAAGTTGTTCGCGTTTTATTGGGCCAAGGAATGGAAGCGATCGGAGC
GGTCCGAGCCGTTGGCCGTGTTGCGTTCAAGGTTGTGAGCGAAGGACGAG
CGAATATCCTTCGGATGATTCTTGACGCGGTGGGAGAGGAGCAGCGGGAA
CAGTTGTCGGCGTCAAAGTTCATGAACACTTCCCTGCTCCAAAGAGCCGT
TGCGAACAGAGATCTTTCCATAGTAAGAGTTCTCCTCGCATTCGGCGCGG
CTGAGACGGCGTGCGACGCGTACGGAAAGCTCATGATGGATATTGTTCTG
GCCAATGAGCCTAAAGACAAGAGCGATCCGAAGAACACGTACGCAATCTG
TAGCATGTTGGACCGGGCCCCAGCGCTCCTCGCTCGATCTTGGCTTTGGC
CAACCTGTTATGCCACCACCAAGAACGCATCCAACGGAGAAGAGAAGGCG
ATATTATATGTGCGGATCTCGCGTTCGAAGAATCGCGACTTGTACGCGAA
AATATTGAGAGGGTGAATGGCCGATACTGAGGCAGCTCGTCTTCGTGAGA
AAGACTTGGCAACGAGACTCACTGACGCCGTGAGAGGCAGAAACATTAAA
ATTGCTGAAGATTTGTTGTTGGAAGGTGCGAGCGTGCACGGGTCGGTAGA
AATATATGTCCCCCCACTCATTGTTGCCGCTGAGACCGGCAATGCCAAGA
TGATGAAGTTACTCCTTGACCGAGGCGCTGATCCCGACCAATGCATTCGG
AAAGAAATCATCAGTCCCTTCGAAATCCGTTTGGCGAGGGGGACGCGATC
CCTATACGTCGCCGTGTTGATGGAACATCTAAATGCAACCCGAATGTTAC
TGGAGGCTGGCGCCAATCCTAATGCCACCGATGTCGAGGGAAACACTCCT
CTCATGGTGCTATGTCGGGGAAGGCTCGTGGATAGAGCTACAGCGATATC
GAGAATTACTTTTCTTCGAGTCCTGTTGGATGCAGGAGCAAATCCCCTCT
TGGTCCAGATCTTCGGTTTCACCGCGATGCACTTTGCGGCGGGAAGCAAC
GATGTCGATCTCCTGGACATCATGTTGAGGACGGCGCCATCAACTCTAGA
TCGTGTCTCGTGGAACGGCACGACGCCTTTGCTCATGGCAGCTGAAGCTG
GAAATGCGGAGTCTGTATCCCGCCTGCTTTCGGCCGGAGCAAGCAACAAG
TCGGTGTTCGAGCTGCCCAATATGGATTTCGCGTGCCCTCTGGCAGCCGC
TGTGGACCGAGGCCACGACGAAGTTGTTCGCGTTTTATTGGGCCAAGGAA
TGGAAGCGATCGGAGCGGTCCGAGCCGTTGGCCGTGTTGCGTTCAAGGTT
GTGAGCGAAGGACGAGCGAATATCCTTCGGATGATTCTTGACGCGGTGGG
AGAGGAGCAGCGGGAACAGTTGTCGGCGTCAAAGTTCATGAACACTTCCC
TGCTCCAAAGAGCCGTTGCGAACAGAGATCTTTCCATAGTAAGAGTTCTC
CTCGCATTCGGCGCGGCTGAGACGGCGTGCGACGCGTACGGAAAGCTCAT
GATGGATATTGTTCTGGCCAATGAGCCTAAAGACAAGAGCGATCCGAAGA
ACACGTACGCAATCTGTAGCATGTTGGACCGGGCCCCAGCGCTCCTCGCT
CGATCTTGGCTTTGGCCAACCTGTTATGCCACCACCAAGAACGCATCCAA
CGGAGAAGAGAAGGCGATATTATATGTGCGGATCTCGCGTTCGAAGAATC
GCGACTTGTACGCGAAAATATTGAGAGGGTGA
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