mRNA_H-elongata_contig80779.15735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80779.15735.1
Unique NamemRNA_H-elongata_contig80779.15735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: D8LIH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH2_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 7.520e-118
Identity = 169/187 (90.37%), Postives = 180/187 (96.26%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H  ++LLVLGFS GVFGLYEMPDCTA+HTLSVGQ+GIGTCDV+ TGDWLAFGC+RLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDD KVKLWST+SGFCFVTF+EHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRT+VTPQPAQLTSLALD SG++VVAG MDPFEV
Sbjct:  323 HAKRSLLVLGFSSGVFGLYEMPDCTAIHTLSVGQAGIGTCDVSTTGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 509
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 1.480e-115
Identity = 170/187 (90.91%), Postives = 180/187 (96.26%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H  ++LLVLGFS GVFGLYEMPDCTA+HTLSVGQ+GIGTCDV+ TGDWLAFGC+RLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDD KVKLWSTSSGFCFVTF+EHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRT+VTPQPAQLTSLALD SG++VVAG MDPFEV
Sbjct:  317 HAKRSLLVLGFSSGVFGLYEMPDCTAIHTLSVGQAGIGTCDVSTTGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDSKVKLWSTSSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 503
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: W7T6B9_9STRA (Small nucleolar ribonucleoprotein complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6B9_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.500e-80
Identity = 123/186 (66.13%), Postives = 145/186 (77.96%), Query Frame = 1 
Query:    4 PTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            P  ALLV+GFS GVFGLY++P    VHTLSV    IGT  +N TG+WLA GC+ LGQLLVWEWQSETYVLKQQGH   +N  A+   G V ATGG+D KVKLWST+SGF FVTF+ H+APVTA+ F  +  AV+SASLDGTVRAHDL+RY+NFRT+ TP P QL SLA+DPSG++V AG  +PFEV
Sbjct:  314 PGTALLVVGFSDGVFGLYDLPTGAVVHTLSVSSGQIGTVALNLTGEWLALGCAPLGQLLVWEWQSETYVLKQQGHAQAVNAVAYSPDGQVMATGGEDAKVKLWSTASGFSFVTFTAHDAPVTALAFLGSGQAVLSASLDGTVRAHDLLRYRNFRTLTTPAPTQLLSLAVDPSGEVVCAGSSEPFEV 499
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A812ZN46_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZN46_9DINO)

HSP 1 Score: 246 bits (628), Expect = 8.580e-79
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H    ++V+GFS G+FGLY +P+C+ +HTLS+    I T D+N +G+WLAFG   LGQLLVWEWQSETY+LKQQGH Y +N  A+   G V ATG DD KVKLWST SGFCFVTFS+H A VTA+ F     AV+SAS DGTVRA DLVRY+NFRTM TP P Q  SLA DP G++V AG ++PF++
Sbjct:   95 HTKTNMVVVGFSSGIFGLYSLPECSNLHTLSISSHRIQTVDINSSGEWLAFGSRALGQLLVWEWQSETYILKQQGHFYDINTLAYSPDGQVVATGADDGKVKLWSTRSGFCFVTFSQHTAAVTALAFVGKGVAVLSASSDGTVRAFDLVRYRNFRTMTTPSPVQFMSLAADPGGEIVCAGCLEPFDI 281
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A2P4WX09_9STRA (Periodic tryptophan protein 2 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WX09_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.690e-78
Identity = 119/187 (63.64%), Postives = 142/187 (75.94%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H +  +LV+GF  G FGLYE+P    +HTLSV Q+ + T  VN TG+WLAF   +LGQLLVWEW+SETYVLKQQGH + LN A++   G + ATG DD K+KLW T+SGFC+VTF+EH APVTAV+F P+  AVVSASLDGTVRA DL RYKNFR + TP+P Q  SLALDPSG +V AG MDPF V
Sbjct:   12 HSSTGMLVVGFGNGTFGLYELPAFVNIHTLSVTQNELETVAVNATGEWLAFASRKLGQLLVWEWRSETYVLKQQGHYFDLNAASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHSAPVTAVQFVPSGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPTQFLSLALDPSGQVVCAGSMDPFNV 198
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A4D9D7J8_9STRA (Utp12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7J8_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.060e-77
Identity = 122/185 (65.95%), Postives = 144/185 (77.84%), Query Frame = 1 
Query:    4 PTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFE 558
            P  ALLV+GFS GVFGLY++P    VHTLSV    IGT  +N TG+WLA GC+ LGQLLVWEWQSETYVLKQQGH   +N  A+   G V ATGG+D KVKLWST+SGF FVTF+ H+APVTA+ F  +  AV+SASLDGTVRAHDL+RY+NFRT+ TP P QL SLA+DPSG++V AG  +PFE
Sbjct:  314 PGTALLVVGFSDGVFGLYDLPTGAVVHTLSVSSGQIGTVALNLTGEWLALGCASLGQLLVWEWQSETYVLKQQGHAQAVNAVAYSPDGQVMATGGEDAKVKLWSTASGFSFVTFTAHDAPVTALAFLGSGQAVLSASLDGTVRAHDLLRYRNFRTLTTPAPTQLLSLAVDPSGEVVCAGSSEPFE 498
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A1Y1YMM0_9FUNG (WD repeat protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YMM0_9FUNG)

HSP 1 Score: 254 bits (649), Expect = 1.550e-76
Identity = 112/187 (59.89%), Postives = 148/187 (79.14%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H T  LL++GF+ G+FG++E+PD T +HTLS+ Q+ I T  +N +G+WLA G S+LGQLLVWEWQSE+YVLKQQGH Y +NC A+ + G   ATGGDD KVK+W+T+SGFCFVTFS+H + V AV FT N+  V+SAS DGTVRA+DL+RY+NFRT  +P P Q ++L++DPSG++V AG MD FE+
Sbjct:  256 HQTSNLLLVGFTTGIFGIWELPDFTNIHTLSISQNRIDTASINASGEWLALGSSKLGQLLVWEWQSESYVLKQQGHFYDMNCLAYSSDGQYIATGGDDGKVKIWNTTSGFCFVTFSDHSSGVVAVEFTKNSQVVLSASRDGTVRAYDLLRYRNFRTFTSPSPVQFSALSVDPSGEIVCAGSMDTFEI 442
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A4P9XME7_9FUNG (WD40 repeat-like protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XME7_9FUNG)

HSP 1 Score: 252 bits (644), Expect = 5.640e-76
Identity = 115/187 (61.50%), Postives = 142/187 (75.94%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
             P   LL +GF+ GVFG++EMPD   +HTLS+ Q  I TC VN +G+WLAFG  +LGQLLVWEWQSETYVLKQQGH Y +N  AF   G   ATGGDD KVK+WS +SGFCFVTF+EH+A VT V F  N   ++S+SLDGTVRA+D++RY+NFRT +TP+P Q +SLA DPSG++V AG  D FE+
Sbjct:  217 QPRNGLLCVGFASGVFGIWEMPDFNNIHTLSISQHRIDTCAVNASGEWLAFGSCKLGQLLVWEWQSETYVLKQQGHYYDMNVVAFSPDGQNIATGGDDGKVKVWSAASGFCFVTFAEHDAAVTGVEFVKNGQVLLSSSLDGTVRAYDMIRYRNFRTFLTPEPKQFSSLACDPSGEIVCAGSRDSFEI 403
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: H3GD86_PHYRM (Utp12 domain-containing protein n=30 Tax=Peronosporaceae TaxID=4777 RepID=H3GD86_PHYRM)

HSP 1 Score: 253 bits (647), Expect = 5.670e-76
Identity = 120/187 (64.17%), Postives = 143/187 (76.47%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H +  +LV+GF  G FGLYE+P    +HTLSV Q+ + T  VN TG+WLAF   +LGQLLVWEW+SETYVLKQQGH + LN A++   G + ATG DD K+KLW T+SGFC+VTF+EH APVTAV+FTP+  AVVSASLDGTVRA DL RYKNFR + TP+P Q  SLALDPSG +V AG MDPF V
Sbjct:  303 HSSTGMLVVGFGNGTFGLYELPAFVNIHTLSVTQNELETVAVNATGEWLAFASRKLGQLLVWEWRSETYVLKQQGHYFDLNAASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHSAPVTAVQFTPSGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPTQFLSLALDPSGQVVCAGSMDPFNV 489
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BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Match: A0A662WSJ9_9STRA (Utp12 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSJ9_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.210e-75
Identity = 119/187 (63.64%), Postives = 143/187 (76.47%), Query Frame = 1 
Query:    1 HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLAFGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHKVKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEV 561
            H +  LL++GF  G FGLYE+P    VHTLSV Q+ + T  VN +G+WLAF   +LGQLLVWEW+SETYVLKQQGH + LN A++   G + ATG DD K+KLW T+SGFC+VTFSEH APVTAV+FTP+  AV+SASLDGTVRA DL RYKNFR + TP+P Q  SLALDPSG +V AG +DPF V
Sbjct:  311 HSSTGLLIVGFGNGTFGLYELPSFVNVHTLSVTQNELETVAVNASGEWLAFASRKLGQLLVWEWRSETYVLKQQGHYFDLNAASYSPDGRLLATGADDAKLKLWDTASGFCYVTFSEHAAPVTAVQFTPSGQAVISASLDGTVRAFDLNRYKNFRVLTTPEPVQFLSLALDPSGQVVCAGSLDPFNV 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80779.15735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIH2_ECTSI7.520e-11890.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCN5_9PHAE1.480e-11590.91Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
W7T6B9_9STRA1.500e-8066.13Small nucleolar ribonucleoprotein complex subunit ... [more]
A0A812ZN46_9DINO8.580e-7960.96Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A2P4WX09_9STRA1.690e-7863.64Periodic tryptophan protein 2 (Fragment) n=1 Tax=P... [more]
A0A4D9D7J8_9STRA6.060e-7765.95Utp12 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A1Y1YMM0_9FUNG1.550e-7659.89WD repeat protein n=1 Tax=Basidiobolus meristospor... [more]
A0A4P9XME7_9FUNG5.640e-7661.50WD40 repeat-like protein n=1 Tax=Thamnocephalis sp... [more]
H3GD86_PHYRM5.670e-7664.17Utp12 domain-containing protein n=30 Tax=Peronospo... [more]
A0A662WSJ9_9STRA1.210e-7563.64Utp12 domain-containing protein n=2 Tax=Nothophyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80779contigH-elongata_contig80779:54..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.0
Seed ortholog evalue1.4e-96
Seed eggNOG ortholog2880.D8LIH2
Preferred namePWP2
KEGG koko:K08852,ko:K14558
KEGG Pathwayko03008,ko04140,ko04141,ko04210,ko04932,ko05010,map03008,map04140,map04141,map04210,map04932,map05010
GOsGO:0000028,GO:0000151,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000920,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007163,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010119,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030010,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034388,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080008,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0291@1,KOG0291@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Hectar predicted targeting categorysignal peptide
Exons4
Model size567
Cds size567
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80779.15735.1prot_H-elongata_contig80779.15735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80779 54..2752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.2496204-CDS-H-elongata_contig80779:53..1711622931214.2496204-CDS-H-elongata_contig80779:53..171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 54..171 -
1691679744.6137915-CDS-H-elongata_contig80779:53..1711691679744.6137915-CDS-H-elongata_contig80779:53..171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 54..171 -
1622931214.2664392-CDS-H-elongata_contig80779:779..9281622931214.2664392-CDS-H-elongata_contig80779:779..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 780..928 -
1691679744.6251159-CDS-H-elongata_contig80779:779..9281691679744.6251159-CDS-H-elongata_contig80779:779..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 780..928 -
1622931214.2848766-CDS-H-elongata_contig80779:1771..18971622931214.2848766-CDS-H-elongata_contig80779:1771..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 1772..1897 -
1691679744.6337295-CDS-H-elongata_contig80779:1771..18971691679744.6337295-CDS-H-elongata_contig80779:1771..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 1772..1897 -
1622931214.2980175-CDS-H-elongata_contig80779:2578..27521622931214.2980175-CDS-H-elongata_contig80779:2578..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 2579..2752 -
1691679744.6421459-CDS-H-elongata_contig80779:2578..27521691679744.6421459-CDS-H-elongata_contig80779:2578..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80779 2579..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80779.15735.1

>prot_H-elongata_contig80779.15735.1 ID=prot_H-elongata_contig80779.15735.1|Name=mRNA_H-elongata_contig80779.15735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
HPTQALLVLGFSIGVFGLYEMPDCTAVHTLSVGQSGIGTCDVNRTGDWLA
FGCSRLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDHK
VKLWSTSSGFCFVTFSEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVR
YKNFRTMVTPQPAQLTSLALDPSGDLVVAGGMDPFEVL*
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mRNA from alignment at H-elongata_contig80779:54..2752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80779.15735.1 ID=mRNA_H-elongata_contig80779.15735.1|Name=mRNA_H-elongata_contig80779.15735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2699bp|location=Sequence derived from alignment at H-elongata_contig80779:54..2752- (Himanthalia elongata Himel1 dioecious)
CATCCCACACAGGCTTTGCTGGTGCTAGGTTTCTCGATAGGCGTGTTTGG
GCTGTACGAGATGCCCGACTGCACCGCTGTCCACACCCTCAGCGTAGGAC
AGTCGGGGATCGGGACCTGCGACGTAAATCGAACCGGCGACTGGTTGGCG
TTCGGGTGCTCCAGGCTAGGGCAGGTGCGCTACGCCATTTAGTAAAATAG
TTTGTTGTTTTGCGATGTGTGTTGTGTTTGCGTCCGCGCTTTGAGCGTTT
CTCCGTAGAAAAACGCCTCCACGAAGGGCAGTGGTTGTTTTCAGGCGTGG
CCTTGCTCTGCGTGGGTTTTGACGGAGAACGATTGGTGGTGTCACAAAGC
ATCCTGGATTAGTTGTGCTTGCTCGTTAGCTTGATATTCGGGTGGCTAAT
AGTGGCACGAAAGGTTAGTTCGTTTTTTGTGTGGATTGACACCCTCCGCG
ATGACTATGAATATGCCTTTGTGCTTGGAAAACCTTCGAACTTACTAAGC
ACCCGGCAGTAGACCGCTTCTTTAACCAATTAAACACGCCCGCGCCCCCA
TACATAAATACACAAGAAGGACGAAGTTAAGAACAACAATACCCCCACCA
GTTACAGTTACATTTACAGTCACAGTACGGGATATCAGGATATGCAATAA
TGTACGATTACCATAAATTGCGCCCCTCTACTTCCGACGCGATCCACGCC
TTGCTTCGCCTTACTTCGCCTTGCCTTTTGTTGTATTTTAGCTCCCCCCC
CGTCCCCTTATTGCTCTATCCCCCCAATGGTCCAACGATCGGCGGTCCTT
CTTTTTCGCTTTTTTTCGCTTTTTTTCGCTTATTTTCGCTTTTTTTTCTT
CCTAGCTATTGGTTTGGGAGTGGCAGAGCGAGACGTATGTTCTCAAGCAG
CAGGGCCACGGCTACGGGCTCAACTGTGCCGCTTTCGGGGCGACGGGGTC
TGTGTGCGCCACGGGAGGGGACGATCACAAGGTGACCCCGAAAAAAACGC
CAGCTTATGTGTAGGTTGCTTGTTCGCCTCGAGAAGCATATCCATTGGTC
GTCGCTACTGGTTAGGGGTGGAGGGGCTTTCAAAATCCTCGAATGCGAAT
ACTGTATTCGATATTTCGAATGAAAATCATAGCTTTTGTTAGTCGGTATC
GGATTTATCTGGAACAAACAACCACACTCTTGTATTTTGGTGCATGATTG
TGTGAAGTAGTAACGCTCGAGCCTTGCGTGGATAGTAACGAAGGCCGTTT
TGCGCCGCCGTTTTGTACCCTTACCATACTAATATGCCATATTTTCGATT
TTGGAGGTGATTTTTTTTTCTTTTTTTCAAAATACCTATAATAGTCCTAT
GTACTCTATACAGTATCTATCTATGTATCTACATATCTATTTTATGTTAA
AAAGTTATTGCTTAGCTCTATTTTTTAAAAATATACCAGTATGATAAAAA
AAAACTATTAATATACCCTATAATGGTATGACTCGTACCTCTCACGATCA
TGTATATATAGAGCCCTTCCGGGTTGGAGTTGAGATATAACCTATATATA
TATATATATACTGGTATATTTATTTATTTATTTATTTTCATTATAAAAAT
CTCCATAAAAGCTATGCTGTCGTTGTTTTAAGTTTTATTTTTTAGTTTGT
ATTGCATGTGGGAGAAAATCGCGCATCTGGCCCTATTTTTTGCCATTTCC
CCGCCGTCGGTGGTGAATCGCGTCATAGTACAATCACGCTCTGTGTTGAT
TCGGGGAGTTGCCAAGAGGCGGTGCGCTTTCGTGTGTGTGTGTGTTTGTG
TGTGTCCATAATGGTCGATCTCAGGTGAAGCTGTGGTCGACGTCAAGCGG
ATTTTGCTTCGTAACTTTCTCCGAACACGAGGCCCCCGTCACCGCCGTCC
GCTTCACCCCTAACGCCTCCGCGGTGGTCTCCGCCTCGCTCGACGGGACT
GTCAGAGCGCACGACCTTGTGCGGTGAGTTCCTTGTACAAAATAACGCCA
ATTGTAATTATTGTGGAACTCCCCCCCCCTCCCTCCTCCCGTGAAAGTGT
TGGTGTGGTTCTGTGGAGGAGCATTTCTATCGGGATGAACGGTTTTCAGG
CGCCAAAACTCTCGGAATATTTTGCCCTGGCGTTTGTTTCGCGAGAGAGA
GACAAAGAGGGACACGAAACACAACACGTCATTGACACCATAGATGTGCT
CGTCCACTAGGGCCATCGAGCGAGAAGAGAGGGAAAGAAATGGAGCAAGA
TTTCGTCCATTCGTTTTTCGGTAATTCTAAAATTTCGATTTTTCTTGATC
ATTCTCTCGACCAATTTCGACCATTCTGAAGTGCATTTTTTTTTTAAAGT
GTGTTATCATTAGAGGAAAAATAAATAAATAAATAGGGAGGCCGGGAAAG
GAGGGGAAAAGGGGACATGACTGCATTGGCTTTCCACCATGACGTCAGAG
GTGACGTAGGCGTGTTTCCTTCGTCAATAATAGCCGCCACGATTAGCTCT
ATACTGTACCCTAGTTAATACTGTACCCTAGTTAATAGTCAGGAGTGATG
ACCACGAGATGGCTATTGACTGCTGCCGCAGGTACAAGAATTTTCGGACG
ATGGTGACCCCTCAGCCGGCGCAGCTCACTTCCCTGGCTCTCGACCCCTC
CGGAGATCTCGTCGTGGCTGGAGGCATGGACCCCTTCGAGGTACTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig80779:54..2752-

>mRNA_H-elongata_contig80779.15735.1 ID=mRNA_H-elongata_contig80779.15735.1|Name=mRNA_H-elongata_contig80779.15735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig80779:54..2752- (Himanthalia elongata Himel1 dioecious)
CATCCCACACAGGCTTTGCTGGTGCTAGGTTTCTCGATAGGCGTGTTTGG
GCTGTACGAGATGCCCGACTGCACCGCTGTCCACACCCTCAGCGTAGGAC
AGTCGGGGATCGGGACCTGCGACGTAAATCGAACCGGCGACTGGTTGGCG
TTCGGGTGCTCCAGGCTAGGGCAGCATCCCACACAGGCTTTGCTGGTGCT
AGGTTTCTCGATAGGCGTGTTTGGGCTGTACGAGATGCCCGACTGCACCG
CTGTCCACACCCTCAGCGTAGGACAGTCGGGGATCGGGACCTGCGACGTA
AATCGAACCGGCGACTGGTTGGCGTTCGGGTGCTCCAGGCTAGGGCAGCT
ATTGGTTTGGGAGTGGCAGAGCGAGACGTATGTTCTCAAGCAGCAGGGCC
ACGGCTACGGGCTCAACTGTGCCGCTTTCGGGGCGACGGGGTCTGTGTGC
GCCACGGGAGGGGACGATCACAAGCTATTGGTTTGGGAGTGGCAGAGCGA
GACGTATGTTCTCAAGCAGCAGGGCCACGGCTACGGGCTCAACTGTGCCG
CTTTCGGGGCGACGGGGTCTGTGTGCGCCACGGGAGGGGACGATCACAAG
GTGAAGCTGTGGTCGACGTCAAGCGGATTTTGCTTCGTAACTTTCTCCGA
ACACGAGGCCCCCGTCACCGCCGTCCGCTTCACCCCTAACGCCTCCGCGG
TGGTCTCCGCCTCGCTCGACGGGACTGTCAGAGCGCACGACCTTGTGCGG
TGAAGCTGTGGTCGACGTCAAGCGGATTTTGCTTCGTAACTTTCTCCGAA
CACGAGGCCCCCGTCACCGCCGTCCGCTTCACCCCTAACGCCTCCGCGGT
GGTCTCCGCCTCGCTCGACGGGACTGTCAGAGCGCACGACCTTGTGCGGT
ACAAGAATTTTCGGACGATGGTGACCCCTCAGCCGGCGCAGCTCACTTCC
CTGGCTCTCGACCCCTCCGGAGATCTCGTCGTGGCTGGAGGCATGGACCC
CTTCGAGGTACTGTAAGTACAAGAATTTTCGGACGATGGTGACCCCTCAG
CCGGCGCAGCTCACTTCCCTGGCTCTCGACCCCTCCGGAGATCTCGTCGT
GGCTGGAGGCATGGACCCCTTCGAGGTACTGTAA
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