mRNA_H-elongata_contig80772.15734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80772.15734.1
Unique NamemRNA_H-elongata_contig80772.15734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: D8LFS0_ECTSI (Defective in cullin neddylation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS0_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.380e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVLIISWKM+A  MCVY+R EWR+GMS MGVS+  QLRQK+
Sbjct:  112 QDLVVLIISWKMEAEEMCVYSRQEWRRGMSKMGVSSTRQLRQKL 155
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: UPI00092F3E40 (DCN1-like protein 2 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F3E40)

HSP 1 Score: 53.9 bits (128), Expect = 2.650e-8
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 HQDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            HQD+V+L+ISW MKAG MC +T+ E+  G+ ++GV ++ + R+K+
Sbjct:   24 HQDIVMLVISWHMKAGTMCEFTQKEFIDGLQSLGVDSLEKFREKI 68
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: A0A5D6Y6G0_9STRA (Defective in cullin neddylation protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6G0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVLII+WKMKA  MC +TR EW++GM+ MG  +  +L++++
Sbjct:  434 QDIVVLIIAWKMKAAYMCAFTRKEWKEGMAAMGTDSAAKLKEQL 477
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: K3W7W8_GLOUD (Defective in cullin neddylation protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7W8_GLOUD)

HSP 1 Score: 55.5 bits (132), Expect = 7.930e-8
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I WKM+A  MC +TR EW++GM  MGV ++ +++ K+
Sbjct:  101 QDIVVLVIGWKMEAAYMCEFTRKEWKKGMEAMGVDSIDKMKAKI 144
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: A0A0P1ATI7_PLAHL (Defective in cullin neddylation protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATI7_PLAHL)

HSP 1 Score: 53.5 bits (127), Expect = 3.930e-7
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKMKA  MC +TR EW+ GM  MG  +   L+ K+
Sbjct:   98 QDLVVLVIAWKMKATYMCAFTRKEWQSGMQKMGCDSAAILKAKI 141
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: D0NY45_PHYIT (Defective in cullin neddylation protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0NY45_PHYIT)

HSP 1 Score: 52.0 bits (123), Expect = 9.350e-7
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKM+A  MC +TR EW++GM  M   +  +L+ K+
Sbjct:   38 QDLVVLVIAWKMQAAYMCAFTRKEWQKGMQEMDCDSAAKLKAKI 81
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: A0A662WIL3_9STRA (Defective in cullin neddylation protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIL3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.000e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKM+A  MC +TR EW  GM TM   +  +++ K+
Sbjct:   15 QDIVVLVIAWKMEAAYMCAFTRKEWMAGMETMDCDSAAKIKAKI 58
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: A0A0W8D8Y6_PHYNI (Defective in cullin neddylation protein n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D8Y6_PHYNI)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKM+A  MC +TR EW++GM  M   +  +L+ K+
Sbjct:  362 QDLVVLVIAWKMQAAYMCAFTRKEWQKGMQEMDCDSAAKLKAKI 405
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: M4B1U3_HYAAE (Defective in cullin neddylation protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1U3_HYAAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.120e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKM+A  MC +TR EW++GM  M   ++ +L+ K+
Sbjct:   55 QDVVVLVIAWKMQAAYMCAFTRKEWQKGMREMDCDSVAKLKAKL 98
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BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Match: A0A3M6VRM4_9STRA (Defective in cullin neddylation protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRM4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 QDMVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV 135
            QD+VVL+I+WKM+A  MC +TR EW++GM  M   ++ +L+ K+
Sbjct:  372 QDIVVLVIAWKMQAAYMCAFTRREWQKGMQEMDCDSVAKLKTKL 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80772.15734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFS0_ECTSI1.380e-1272.73Defective in cullin neddylation protein n=1 Tax=Ec... [more]
UPI00092F3E402.650e-846.67DCN1-like protein 2 n=1 Tax=Lupinus angustifolius ... [more]
A0A5D6Y6G0_9STRA2.910e-852.27Defective in cullin neddylation protein n=1 Tax=Py... [more]
K3W7W8_GLOUD7.930e-850.00Defective in cullin neddylation protein n=1 Tax=Gl... [more]
A0A0P1ATI7_PLAHL3.930e-752.27Defective in cullin neddylation protein n=1 Tax=Pl... [more]
D0NY45_PHYIT9.350e-747.73Defective in cullin neddylation protein n=19 Tax=P... [more]
A0A662WIL3_9STRA1.000e-647.73Defective in cullin neddylation protein (Fragment)... [more]
A0A0W8D8Y6_PHYNI1.710e-647.73Defective in cullin neddylation protein n=2 Tax=Ph... [more]
M4B1U3_HYAAE2.120e-647.73Defective in cullin neddylation protein n=1 Tax=Hy... [more]
A0A3M6VRM4_9STRA3.190e-647.73Defective in cullin neddylation protein n=2 Tax=Pe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80772contigH-elongata_contig80772:2045..2179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog2880.D8LFS0
KEGG koko:K17822
EggNOG free text desc.cullin family protein binding
EggNOG OGsKOG3077@1,KOG3077@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003780.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.1804676-UTR-H-elongata_contig80772:2044..20531622931214.1804676-UTR-H-elongata_contig80772:2044..2053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80772 2045..2053 +
1691679744.583137-UTR-H-elongata_contig80772:2044..20531691679744.583137-UTR-H-elongata_contig80772:2044..2053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80772 2045..2053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.2014284-CDS-H-elongata_contig80772:2053..21791622931214.2014284-CDS-H-elongata_contig80772:2053..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80772 2054..2179 +
1691679744.6020658-CDS-H-elongata_contig80772:2053..21791691679744.6020658-CDS-H-elongata_contig80772:2053..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80772 2054..2179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80772.15734.1prot_H-elongata_contig80772.15734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80772 2054..2179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80772.15734.1

>prot_H-elongata_contig80772.15734.1 ID=prot_H-elongata_contig80772.15734.1|Name=mRNA_H-elongata_contig80772.15734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVVLIISWKMKAGGMCVYTRDEWRQGMSTMGVSTMYQLRQKV
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mRNA from alignment at H-elongata_contig80772:2045..2179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80772.15734.1 ID=mRNA_H-elongata_contig80772.15734.1|Name=mRNA_H-elongata_contig80772.15734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig80772:2045..2179+ (Himanthalia elongata Himel1 dioecious)
CATCAGGACATGGTGGTGCTGATAATATCGTGGAAGATGAAGGCCGGGGG
GATGTGCGTTTATACGAGGGACGAGTGGCGCCAGGGCATGTCGACGATGG
GGGTTTCCACGATGTACCAGCTGCGACAAAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig80772:2045..2179+

>mRNA_H-elongata_contig80772.15734.1 ID=mRNA_H-elongata_contig80772.15734.1|Name=mRNA_H-elongata_contig80772.15734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig80772:2045..2179+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGCTGATAATATCGTGGAAGATGAAGGCCGGGGGGATGTGCGT
TTATACGAGGGACGAGTGGCGCCAGGGCATGTCGACGATGGGGGTTTCCA
CGATGTACCAGCTGCGACAAAAGGTGATGGTGGTGCTGATAATATCGTGG
AAGATGAAGGCCGGGGGGATGTGCGTTTATACGAGGGACGAGTGGCGCCA
GGGCATGTCGACGATGGGGGTTTCCACGATGTACCAGCTGCGACAAAAGG
TG
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