mRNA_H-elongata_contig80728.15723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80728.15723.1
Unique NamemRNA_H-elongata_contig80728.15723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Match: A0A6H5JLW9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.990e-37
Identity = 72/134 (53.73%), Postives = 98/134 (73.13%), Query Frame = 1 
Query:    1 REKVMKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRIQTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWGVVLFSIGTVLAILLRAGEPLFVCAALGLSR 402
            +++++K+ +L    +V+AGGGA G SPGRERL  AG      + VV +LL++RIQ ADFGDA DVE ET S LG+ + K+AS  R+SA+EHDLACL+S A  WGV LF IG VL++L +AG+PLF+ + + LSR
Sbjct:   75 KKQLLKIAMLGYARSVIAGGGATGASPGRERLLAAGFGAAVLSGVVCRLLEQRIQNADFGDAPDVEMETLSPLGLALGKKASARRVSAREHDLACLRSTAG-WGVALFVIGAVLSLLFKAGDPLFILSTVALSR 207
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BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Match: D7G1C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.280e-35
Identity = 72/134 (53.73%), Postives = 100/134 (74.63%), Query Frame = 1 
Query:    1 REKVMKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRIQTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWGVVLFSIGTVLAILLRAGEPLFVCAALGLSR 402
            +++++K+ +L    +V+AGGGA G SPGRERL  AG+     + VV +LL++RIQ ADFGDA DVE ET S LG+++ K+AS  R+SA+EHDLACL+S A RWGV LF IG VL++  +AG+PLF+ + + LSR
Sbjct:  417 KKQLLKIAMLGYARSVIAGGGATGASPGRERLLAAGVGAAVLSGVVCRLLEQRIQNADFGDAPDVEMETLSPLGLVLGKKASTQRVSAREHDLACLRSTA-RWGVALFVIGAVLSLFFKAGDPLFILSTVALSR 549
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLW9_9PHAE3.990e-3753.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1C8_ECTSI2.280e-3553.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80728contigH-elongata_contig80728:753..2325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003480.1
Exons3
Model size405
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80728.15723.1prot_H-elongata_contig80728.15723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80728 765..2325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.8007677-UTR-H-elongata_contig80728:752..7641622931212.8007677-UTR-H-elongata_contig80728:752..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80728 753..764 +
1691679743.9551702-UTR-H-elongata_contig80728:752..7641691679743.9551702-UTR-H-elongata_contig80728:752..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80728 753..764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.8154342-CDS-H-elongata_contig80728:764..9241622931212.8154342-CDS-H-elongata_contig80728:764..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 765..924 +
1691679743.9683363-CDS-H-elongata_contig80728:764..9241691679743.9683363-CDS-H-elongata_contig80728:764..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 765..924 +
1622931212.8368928-CDS-H-elongata_contig80728:1578..17081622931212.8368928-CDS-H-elongata_contig80728:1578..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 1579..1708 +
1691679743.9797702-CDS-H-elongata_contig80728:1578..17081691679743.9797702-CDS-H-elongata_contig80728:1578..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 1579..1708 +
1622931212.8725693-CDS-H-elongata_contig80728:2222..23251622931212.8725693-CDS-H-elongata_contig80728:2222..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 2223..2325 +
1691679743.9903617-CDS-H-elongata_contig80728:2222..23251691679743.9903617-CDS-H-elongata_contig80728:2222..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80728 2223..2325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80728.15723.1

>prot_H-elongata_contig80728.15723.1 ID=prot_H-elongata_contig80728.15723.1|Name=mRNA_H-elongata_contig80728.15723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRI
QTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWG
VVLFSIGTVLAILLRAGEPLFVCAALGLSR*
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mRNA from alignment at H-elongata_contig80728:753..2325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80728.15723.1 ID=mRNA_H-elongata_contig80728.15723.1|Name=mRNA_H-elongata_contig80728.15723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1573bp|location=Sequence derived from alignment at H-elongata_contig80728:753..2325+ (Himanthalia elongata Himel1 dioecious)
CGCGAGAAGGTAATGAAGGTGTTGTTGCTGCAAGCCACGACAAACGTCGT
CGCTGGTGGGGGCGCCGCCGGAACGTCCCCTGGTCGCGAGCGACTTTCCC
TTGCGGGGATGGCCATCGGCGGAGGGACGGTTGTGGTGCACAAGCTCTTG
CAGCGGAGGATACAAACAGCCGGTGTGTGTGAGAGGCGCTTCTCAGGCTG
TCCACCGTCGTCGACGACCAAATGCCGAAATATGTTTCTGTAACCGTCGT
CGACGACCATGTCCCGGTACTCGCTTCTGTAACCGTAACCGTAACCGTAA
CTTTAATAGTAACTTCGAGATGAAGGGACTTCATACGATCTATCTTATTC
CAGGGCTTGTTTATTTTGTCATAACTTTAATATAAAGAAACTGTATGCGG
TCTATCTTATTCCGGCGCTTGTTTCTCTAACCGTAACTGTCCTTCTAACT
GTACGATAAATAAAATTAATGCGTTCTATATCATCTTGGCACTTGCTGCC
GTCGCCGCCGCAATATCTCGTCGACCGAGATTTTCCCATTTATCGACGCC
ACAAGACATTAAACACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC
CCGAAAATATAACAAGGCAGCTCGCGGGAAGCTTCTCACCTCAACGGTTG
ATTTAAGAAAATAGCCCAGATATCCTTCAACCTTTCTACCCTTTATCGTC
ATATAATGGGTACAGGTAGTGCGTGGTGTGTGACCCGAAAAATCATCTTA
CGAAACAACATCGCTTCGTCCGCCAGATTTTGGCGACGCCGCAGATGTCG
AGACCGAAACTCGATCGTTACTGGGGGTTTTGATGAGAAAGAGGGCGTCG
ATTGGGCGGATTTCGGCGAAGGAGCACGATCTGGCCTGTCTCCAATCCGC
CGCCAGGTACAGCATCATAAAAGGTACAGCGTTATAAAAAATATGGCGCT
ATAAAAGGTACAGCAGTATCTCCCTCACTCTCCACATTTTTTTTCCCTAA
TGCCGTTACGTTTTATATACTGTATAGTAGAGCAAAGTCACATGAATGTT
GTCGAGGATGGTGCTGATGTGAAGCCAGAGGTTCGGGGATGGGGGGGACA
GTTGTCGTTCCCCATCGCTGCGATTTCTCAGGTCCCCTTCTTCCGACCTT
TCCCCCGTTAAAACGTTAGAACTACCAAAAACAAAGCTCGCGCTGACGAT
GACTTGTTCCATTTGTGAGAGGAGAAGCTGCGTCGCGGTGCATGCCGTCA
AAAGGTGGGGAAAACAATTGTGTCTCACGAGCCGCGTGGACCCTGTTATT
ATTGTCACATTATGCCCTCCCCTCAGCGCACATCGGATTATCGAAGTCGC
GATGATGACGCCTGGGCTCTTGCTTTGCCTCTGCTTTGCCTCTTGTTTTC
CCCTGGTTTGACCGTGTCAGCAGATGGGGTGTCGTCTTGTTTTCCATTGG
AACAGTGCTAGCGATACTTCTTCGCGCTGGAGAACCCCTCTTCGTCTGCG
CCGCGTTAGGCCTCTCAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig80728:753..2325+

>mRNA_H-elongata_contig80728.15723.1 ID=mRNA_H-elongata_contig80728.15723.1|Name=mRNA_H-elongata_contig80728.15723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig80728:753..2325+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGTTGTTGCTGCAAGCCACGACAAACGTCGTCGCTGGTGGGGG
CGCCGCCGGAACGTCCCCTGGTCGCGAGCGACTTTCCCTTGCGGGGATGG
CCATCGGCGGAGGGACGGTTGTGGTGCACAAGCTCTTGCAGCGGAGGATA
CAAACAGCCGATGAAGGTGTTGTTGCTGCAAGCCACGACAAACGTCGTCG
CTGGTGGGGGCGCCGCCGGAACGTCCCCTGGTCGCGAGCGACTTTCCCTT
GCGGGGATGGCCATCGGCGGAGGGACGGTTGTGGTGCACAAGCTCTTGCA
GCGGAGGATACAAACAGCCGATTTTGGCGACGCCGCAGATGTCGAGACCG
AAACTCGATCGTTACTGGGGGTTTTGATGAGAAAGAGGGCGTCGATTGGG
CGGATTTCGGCGAAGGAGCACGATCTGGCCTGTCTCCAATCCGCCGCCAG
ATTTTGGCGACGCCGCAGATGTCGAGACCGAAACTCGATCGTTACTGGGG
GTTTTGATGAGAAAGAGGGCGTCGATTGGGCGGATTTCGGCGAAGGAGCA
CGATCTGGCCTGTCTCCAATCCGCCGCCAGCAGATGGGGTGTCGTCTTGT
TTTCCATTGGAACAGTGCTAGCGATACTTCTTCGCGCTGGAGAACCCCTC
TTCGTCTGCGCCGCGTTAGGCCTCTCAAGGTAGCAGATGGGGTGTCGTCT
TGTTTTCCATTGGAACAGTGCTAGCGATACTTCTTCGCGCTGGAGAACCC
CTCTTCGTCTGCGCCGCGTTAGGCCTCTCAAGGTAG
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