mRNA_H-elongata_contig80625.15712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80625.15712.1
Unique NamemRNA_H-elongata_contig80625.15712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: D7FK14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK14_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.810e-54
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 1
Query:    1 DEYGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHLGPHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDD--GSFMLVTRATDHPQA 291
            DEYGYKYPCVKARG I GS  EVM MIVDS+RVLEYNRYSKGR D+EHLGPHTKIVWNKAQPPL+ KLHDFCTLMHM+ LDD  GSFML+TRAT+HP+A
Sbjct:   78 DEYGYKYPCVKARGIIEGSAAEVMSMIVDSTRVLEYNRYSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKA 176          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A835Z8H4_9STRA (START domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.370e-38
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    7 YGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHLGPHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRATDHPQARNKRG 306
            YG +YPCVKA   +  + E  + +I+DSSRVLEYNRYS+GR DV  LGPHTKIVWN+ QPPLT K+HDFCTLMH+++ D G   + TRATDH +A   RG
Sbjct:   43 YGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRG 142          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A4D9DEU8_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEU8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.340e-31
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 DEYGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHLGPHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRATDHPQ 288
            D YG +YPC+K    +  SPE VM ++VDS RV EYN+YSKGR DV  +GPHTKIVWN+  PPL  K H+FCT+MH+ +  DGS +++T+ TDHP+
Sbjct:  245 DAYGREYPCLKLSTMLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPE 340          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A7S2Y106_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y106_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.140e-26
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 DEYGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHLGPHTKIVWNKAQPPLTSKLHDFCTLMHM-EQLDDGSFMLVTRATDHPQARNKRG 306
            D  G  YP +K+ G +     +++ M++DS RV EYNR+SKGR DV+ +G  TK+VWN+  PP+T K HDFCTLMH+ +   DGS+ ++T+A  HP+    +G
Sbjct:  244 DADGADYPIIKSHGIVNAPAADLVEMMIDSERVQEYNRFSKGRTDVQTMGEDTKVVWNRTWPPMTPKPHDFCTLMHVTKNPKDGSYAMLTKAIQHPKVPKTKG 346          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A4D9CPQ0_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPQ0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.450e-19
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   16 KYPCVKARGTITGSPEEVMCMIVDSSRVLEYNR-YSKGRVDVEHLGPHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRATDHPQA 291
            KY CVKA GT+  SP++++ +  +++RV EYN+ Y++GR D+E +  HTK+VW  + P    K  DFCT++H  +L DG+ ++V R  +HP+A
Sbjct:  378 KYCCVKASGTLAASPDDILALFAENTRVPEYNKFYAEGR-DLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEA 469          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: B7G311_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G311_PHATC)

HSP 1 Score: 79.3 bits (194), Expect = 3.450e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 DEYGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDV-EHLGPHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRA 273
            D YG   P +K R  +  +P E++ +++DSSRV  YN +S GR D+      ++KIV N+ QPPL SK+    TL+H +QLDDG++MLV+RA
Sbjct:  242 DGYGSNLPWIKTRSVVPMTPVEMVDLLMDSSRVTTYNPWSIGREDLWVSEDNNSKIVRNRTQPPLGSKVMVATTLLHAQQLDDGAWMLVSRA 333          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A7R9VKG4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKG4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.360e-14
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    7 YGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDV-------EHLGPH----TKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGS-FMLVTRA-TDHPQARNKRG 306
            YG   P V+A G I  +P +++ M++DSSRV EYN+ S GR DV       E+ GP     TK+V + ++PPL  K  +F TLMH  +L+DG+ +++V+RA T   +A N  G
Sbjct:  102 YGSDLPTVRAEGVINMAPIKIVEMLMDSSRVHEYNKMSLGRDDVLVLQDDLENDGPFGQSITKVVRSASKPPLVRKPIEFVTLMHARKLEDGNGYLIVSRAVTQAEEAINSDG 214          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A7S1Y726_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y726_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.010e-13
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    7 YGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHL-GPH--TKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRA 273
            YG   P VK+   I  +PE++  +++DSS+V  YN+YS GR DV  + GP   TKIV N  +PP++ K     T++H  QL++GS+++V+RA
Sbjct:  150 YGSNLPVVKSESIIDMTPEQMSDLLLDSSKVKTYNKYSVGRTDVRRIEGPTGTTKIVRNITKPPVSQKKVMVTTMLHSRQLENGSYIVVSRA 241          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A6U6KS53_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KS53_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.330e-13
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    7 YGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDV-------EHLGPH----TKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGS-FMLVTRA-TDHPQARNKRG 306
            YG   P V+A G +  +P  ++ +++D+SRV EYN+ S GR DV       E+ GP     TK+V + ++PPL  K  +F TLMH+ +L+DG+ +++V+RA T   +A N  G
Sbjct:  296 YGSDLPTVRAEGVVNMAPSALVDLLLDNSRVYEYNKMSLGRDDVLVLQDDLENDGPFGQSITKVVRSASKPPLVRKSLEFVTLMHVRKLEDGNGYLIVSRAVTQAEEAINSDG 408          
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Match: A0A7S1VKR8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKR8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.840e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    7 YGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDV----EHLGPH------TKIVWNKAQPPLTSKLHDFCTLMHMEQL-DDGSFMLVTRATDH 282
            YG   P ++A G +  SP  ++ M++DS+RV EYN  S GR D+    E + P       TKIV ++ QPP+  K   F T++H  +L +DG ++L++RA  H
Sbjct:   98 YGSDLPAIRAAGLVNMSPGALVDMLMDSTRVKEYNTMSLGRKDMLVLQEDMDPDGPFRGITKIVQSETQPPMIRKTVQFTTILHARKLPNDGGYLLISRAVHH 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80625.15712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FK14_ECTSI2.810e-5482.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8H4_9STRA2.370e-3861.00START domain-containing protein (Fragment) n=1 Tax... [more]
A0A4D9DEU8_9STRA1.340e-3156.25START domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2Y106_9STRA8.140e-2645.63Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CPQ0_9STRA1.450e-1943.01START domain-containing protein n=2 Tax=Monodopsid... [more]
B7G311_PHATC3.450e-1545.65Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7R9VKG4_9STRA9.360e-1441.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1Y726_9STRA1.010e-1342.39Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U6KS53_9STRA4.330e-1338.94Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1VKR8_9STRA1.840e-1237.86Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80625contigH-elongata_contig80625:675..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2850.Phatr47341
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGs2XE26@2836,KOG1591@1,KOG1591@2759
Ec32 ortholog descriptionSTART-like domain
Ec32 orthologEc-18_002830.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.5404558-CDS-H-elongata_contig80625:674..7871622931211.5404558-CDS-H-elongata_contig80625:674..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 675..787 +
1691679743.4459732-CDS-H-elongata_contig80625:674..7871691679743.4459732-CDS-H-elongata_contig80625:674..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 675..787 +
1622931211.5638466-CDS-H-elongata_contig80625:1072..12681622931211.5638466-CDS-H-elongata_contig80625:1072..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 1073..1268 +
1691679743.4598536-CDS-H-elongata_contig80625:1072..12681691679743.4598536-CDS-H-elongata_contig80625:1072..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 1073..1268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80625.15712.1prot_H-elongata_contig80625.15712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80625 675..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80625.15712.1

>prot_H-elongata_contig80625.15712.1 ID=prot_H-elongata_contig80625.15712.1|Name=mRNA_H-elongata_contig80625.15712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
DEYGYKYPCVKARGTITGSPEEVMCMIVDSSRVLEYNRYSKGRVDVEHLG
PHTKIVWNKAQPPLTSKLHDFCTLMHMEQLDDGSFMLVTRATDHPQARNK
RG*
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mRNA from alignment at H-elongata_contig80625:675..1268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80625.15712.1 ID=mRNA_H-elongata_contig80625.15712.1|Name=mRNA_H-elongata_contig80625.15712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at H-elongata_contig80625:675..1268+ (Himanthalia elongata Himel1 dioecious)
GACGAGTACGGCTACAAGTACCCGTGCGTCAAAGCACGCGGGACCATCAC CGGGTCGCCGGAGGAGGTGATGTGCATGATTGTCGACTCCAGCCGCGTCC TGGAGTACAACAGGTGATAAAAGAGGCGATAGGACGGACGAGAAAAGCGT ACCTCAAGAGTACAAGCGCGCTCGCGGACGAAGAATATGGAGCGTCACCA GTGGCTTATTTTTATTTGGTTTCAGTATGTGGGCCTCTCACAAGTTGGTT GTCGGTCGGTTGATGTATGAGCGCCTTGGCTCTGGTGCGCGCGCCTTAAC ATCATCGCATGAACAAAAATGACGCCCGCGCGCGCGTGCTTTTACCCTTT GTCCACCCGCGATAACTGGCTGCACATTTTCTTTTGACATCGGGCCAGGT ACAGTAAGGGGCGGGTGGATGTGGAGCACCTGGGGCCCCACACGAAAATC GTGTGGAATAAGGCCCAGCCGCCTTTGACGAGCAAGCTCCACGACTTCTG CACCCTCATGCATATGGAGCAACTGGACGACGGCTCGTTCATGCTTGTCA CCAGGGCGACCGATCATCCGCAGGCGAGGAATAAACGGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig80625:675..1268+

>mRNA_H-elongata_contig80625.15712.1 ID=mRNA_H-elongata_contig80625.15712.1|Name=mRNA_H-elongata_contig80625.15712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig80625:675..1268+ (Himanthalia elongata Himel1 dioecious)
GACGAGTACGGCTACAAGTACCCGTGCGTCAAAGCACGCGGGACCATCAC
CGGGTCGCCGGAGGAGGTGATGTGCATGATTGTCGACTCCAGCCGCGTCC
TGGAGTACAACAGGACGAGTACGGCTACAAGTACCCGTGCGTCAAAGCAC
GCGGGACCATCACCGGGTCGCCGGAGGAGGTGATGTGCATGATTGTCGAC
TCCAGCCGCGTCCTGGAGTACAACAGGTACAGTAAGGGGCGGGTGGATGT
GGAGCACCTGGGGCCCCACACGAAAATCGTGTGGAATAAGGCCCAGCCGC
CTTTGACGAGCAAGCTCCACGACTTCTGCACCCTCATGCATATGGAGCAA
CTGGACGACGGCTCGTTCATGCTTGTCACCAGGGCGACCGATCATCCGCA
GGCGAGGAATAAACGGGGGTAGGTACAGTAAGGGGCGGGTGGATGTGGAG
CACCTGGGGCCCCACACGAAAATCGTGTGGAATAAGGCCCAGCCGCCTTT
GACGAGCAAGCTCCACGACTTCTGCACCCTCATGCATATGGAGCAACTGG
ACGACGGCTCGTTCATGCTTGTCACCAGGGCGACCGATCATCCGCAGGCG
AGGAATAAACGGGGGTAG
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