mRNA_H-elongata_contig80578.15709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80578.15709.1
Unique NamemRNA_H-elongata_contig80578.15709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: D8LFM5_ECTSI (Sodium/hydrogen exchanger n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM5_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 7.980e-81
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQ 396
            TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIG AIVFCLVARLFNTFPFSALANLWRQRKI+ANMQVVMWFAGLRGAIA+ALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVK Q
Sbjct:  309 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGLAIVFCLVARLFNTFPFSALANLWRQRKITANMQVVMWFAGLRGAIAYALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKIQ 440          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A835YNF3_9STRA (Sodium/hydrogen exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.050e-62
Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    4 AEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQ 396
            AEYIF+S+ATLSEF +FLYMGMGVFTGRF+ WD  F+  A++FCLVAR+FNTFPFS LANLWR+RKI+  MQVVMWFAGLRGAIAFALS SMPG SKDVY STTLMVV+ TT+ CGGLTEPLL RMNVK +
Sbjct:  302 AEYIFSSMATLSEFSMFLYMGMGVFTGRFQGWDPLFVVLAVIFCLVARMFNTFPFSFLANLWRKRKITGGMQVVMWFAGLRGAIAFALSQSMPGPSKDVYTSTTLMVVLITTLVCGGLTEPLLGRMNVKVK 432          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A835YPM8_9STRA (Sodium/hydrogen exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPM8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.760e-60
Identity = 101/132 (76.52%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQ 396
            TAE IF S+ATLSEF V++YMGMGVFTGRF+ WD  F+  A+VFCLVAR+FNTFPFS LANLWR++KI+  MQVVMWF+GLRGAIAFALS SMPG SKDVYASTTLMVV+ TT+ CGGLTEPLL RM VK Q
Sbjct:  297 TAESIFESMATLSEFFVYIYMGMGVFTGRFKGWDPLFVVLAVVFCLVARMFNTFPFSFLANLWRKQKITGGMQVVMWFSGLRGAIAFALSQSMPGPSKDVYASTTLMVVLITTLVCGGLTEPLLTRMKVKLQ 428          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A3L6V4V5_9STRA (Na_H_Exchanger domain-containing protein (Fragment) n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V4V5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.800e-50
Identity = 84/134 (62.69%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQVS 402
            T+E IF S A ++EF VFLYMGMG+  G+F  WD +F+  AIVFCL+ RLFN FP S +AN  R+ K++A MQVV+WFAGLRGAIAFALS  MPGA++D+Y +TTL VVIFTTI CGGLTEPLL +  +K   S
Sbjct:   67 TSESIFQSFALVAEFFVFLYMGMGICVGQFGRWDVKFMVLAIVFCLIGRLFNIFPLSWVANWQRKEKVTAQMQVVLWFAGLRGAIAFALSQDMPGANRDLYTTTTLSVVIFTTIVCGGLTEPLLKQTKLKAAAS 200          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: K3X4D0_GLOUD (Sodium/hydrogen exchanger n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4D0_GLOUD)

HSP 1 Score: 174 bits (440), Expect = 2.300e-49
Identity = 89/130 (68.46%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVK 390
            TAE+IF S A ++EF VFLYMGMGV  G+F  WD +FI  AI+FCLVARLFNTFPFS LANL R  KI   MQ+V+WFAGLRGAIAFALS +MPG ++D+Y +TTL VVIFTTI CGGLTEPLL    +K
Sbjct:  291 TAEHIFKSFALVAEFFVFLYMGMGVCAGQFGRWDLKFIILAIIFCLVARLFNTFPFSWLANLGRTTKIPMKMQIVLWFAGLRGAIAFALSQNMPGPNQDLYITTTLSVVIFTTIICGGLTEPLLKYTKLK 420          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A7S1TVV0_9STRA (Sodium/hydrogen exchanger n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVV0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.400e-49
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQ 396
            T+E  F +LAT+SEF V+LYMGMG+FTGR+R W++ F+  AI+FCL+ RLFN FPFS  ANL+R+++I   MQ+V+WFAGLRGAIAFALS +MP   +D+Y +TTL +V+FTT+ CGGLTEPLL +M +K Q
Sbjct:  315 TSEVTFKALATVSEFFVYLYMGMGIFTGRYRSWNFTFVFLAIIFCLLGRLFNIFPFSFAANLFRRQRIPLRMQIVIWFAGLRGAIAFALSQNMPADHRDLYTTTTLSIVLFTTVVCGGLTEPLLGKMGMKLQ 446          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A425DIF7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DIF7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.260e-48
Identity = 84/134 (62.69%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQVS 402
            T+E IF S A ++EF VFLYMGMG+  G+F  WD +F+  AIVFCL+ RLFN FP S +AN  R+ K++A MQVV+WFAGLRGAIAFALS  MPGA++D+Y +TTL VVIFTTI CGGLTEPLL +  +K   S
Sbjct:  172 TSESIFQSFALVAEFFVFLYMGMGICVGQFGRWDVKFMVLAIVFCLIGRLFNIFPLSWVANWQRKEKVTAQMQVVLWFAGLRGAIAFALSQDMPGANRDLYTTTTLSVVIFTTIVCGGLTEPLLKQTKLKAAAS 305          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A5D6XTM1_9STRA (Sodium/hydrogen exchanger n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTM1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.330e-48
Identity = 91/136 (66.91%), Postives = 105/136 (77.21%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALS----TSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQ 396
            TAE+IF S A ++EF VFLYMGMGV  G+F  WD +FI  AIVFCLVARLFNTFPFS LANL R  KI   MQ+V+WFAGLRGAIAFALS    T+MPG ++D+Y +TTL VVIFTTI CGGLTEPLL    +K +
Sbjct:  284 TAEHIFKSFALVAEFFVFLYMGMGVCAGQFGRWDLKFIVLAIVFCLVARLFNTFPFSWLANLGRTTKIPMKMQIVLWFAGLRGAIAFALSQYVATNMPGPNQDLYVTTTLAVVIFTTIICGGLTEPLLKYTKLKRE 419          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A6G0XPX9_9STRA (Sodium/hydrogen exchanger n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPX9_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.210e-47
Identity = 82/130 (63.08%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVK 390
            TAE IF S A  +EF VFLYMGMG+  G+F  WD++F+  AI+FCLV+RLFN +P S LAN  R+ K+S  MQ V+WFAGLRGA+AFALS  MPGA++D+Y +TTL VVIFTTI CGGLTEPLL +  +K
Sbjct:  194 TAESIFQSFALTAEFFVFLYMGMGICVGQFGRWDFKFMVLAIIFCLVSRLFNIYPLSWLANWKRKEKVSMQMQTVLWFAGLRGAMAFALSQDMPGANRDLYTTTTLSVVIFTTIVCGGLTEPLLKKTKLK 323          
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Match: A0A1V9ZCV7_9STRA (Sodium/hydrogen exchanger (Fragment) n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZCV7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.210e-47
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARLFNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDVYASTTLMVVIFTTIGCGGLTEPLLHRMNVK 390
            T+E IF S A  +EF VFLYMGMG+  G+F  WD+ F+   I+FCL+ARLFN FPFS +ANL R +KI   MQVV+WFAGLRGAIAFALS  MPGA+++VY +TTL +VIFTTI CGGLTEPLL +  +K
Sbjct:  308 TSESIFQSFALAAEFFVFLYMGMGICVGQFGRWDFTFMILGIIFCLIARLFNIFPFSWIANLGRSQKIPFQMQVVLWFAGLRGAIAFALSQDMPGANREVYTTTTLTIVIFTTIVCGGLTEPLLKQTKLK 437          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80578.15709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM5_ECTSI7.980e-8196.97Sodium/hydrogen exchanger n=2 Tax=Ectocarpus TaxID... [more]
A0A835YNF3_9STRA4.050e-6277.86Sodium/hydrogen exchanger n=1 Tax=Tribonema minus ... [more]
A0A835YPM8_9STRA2.760e-6076.52Sodium/hydrogen exchanger n=1 Tax=Tribonema minus ... [more]
A0A3L6V4V5_9STRA8.800e-5062.69Na_H_Exchanger domain-containing protein (Fragment... [more]
K3X4D0_GLOUD2.300e-4968.46Sodium/hydrogen exchanger n=1 Tax=Globisporangium ... [more]
A0A7S1TVV0_9STRA2.400e-4961.36Sodium/hydrogen exchanger n=2 Tax=Phaeomonas parva... [more]
A0A425DIF7_9STRA1.260e-4862.69Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A5D6XTM1_9STRA1.330e-4866.91Sodium/hydrogen exchanger n=1 Tax=Pythium brassicu... [more]
A0A6G0XPX9_9STRA2.210e-4763.08Sodium/hydrogen exchanger n=1 Tax=Aphanomyces eute... [more]
A0A1V9ZCV7_9STRA3.210e-4763.85Sodium/hydrogen exchanger (Fragment) n=3 Tax=Sapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80578contigH-elongata_contig80578:1706..2796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue8e-67
Seed eggNOG ortholog2880.D8LFM5
KEGG koko:K03316,ko:K14724
KEGG TC2.A.36,2.A.36.1.12,2.A.36.1.9
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNa /H exchanger
Ec32 orthologEc-04_001610.1
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.297123-CDS-H-elongata_contig80578:1705..19191622931211.297123-CDS-H-elongata_contig80578:1705..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80578 1706..1919 -
1691679743.3483567-CDS-H-elongata_contig80578:1705..19191691679743.3483567-CDS-H-elongata_contig80578:1705..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80578 1706..1919 -
1622931211.3162386-CDS-H-elongata_contig80578:2608..27961622931211.3162386-CDS-H-elongata_contig80578:2608..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80578 2609..2796 -
1691679743.3668072-CDS-H-elongata_contig80578:2608..27961691679743.3668072-CDS-H-elongata_contig80578:2608..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80578 2609..2796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80578.15709.1prot_H-elongata_contig80578.15709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80578 1706..2796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80578.15709.1

>prot_H-elongata_contig80578.15709.1 ID=prot_H-elongata_contig80578.15709.1|Name=mRNA_H-elongata_contig80578.15709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
TAEYIFASLATLSEFVVFLYMGMGVFTGRFRDWDWRFIGFAIVFCLVARL
FNTFPFSALANLWRQRKISANMQVVMWFAGLRGAIAFALSTSMPGASKDV
YASTTLMVVIFTTIGCGGLTEPLLHRMNVKTQVS
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mRNA from alignment at H-elongata_contig80578:1706..2796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80578.15709.1 ID=mRNA_H-elongata_contig80578.15709.1|Name=mRNA_H-elongata_contig80578.15709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1091bp|location=Sequence derived from alignment at H-elongata_contig80578:1706..2796- (Himanthalia elongata Himel1 dioecious)
ACGGCGGAGTATATCTTCGCCTCTCTGGCGACGCTCTCCGAGTTCGTGGT TTTCCTATACATGGGGATGGGTGTTTTCACCGGGCGCTTCAGGGACTGGG ACTGGCGCTTCATCGGCTTTGCTATTGTGTTCTGCCTCGTGGCGCGGCTG TTCAACACGTTCCCCTTCAGCGCGCTTGCCAACCTCTGGTGAGCGCTGCA GGCTGCTTCTGGTTTCGTTGGCTCTCGTTGCCTTAATCCCCCCCCCCCCA TCCTAAAGCAGAAGTGTGCGAGGCGTAGCAGGCTCCCTTTCAGCGCGCTT GCCAGCGCTCTGAAGATCGTGGGAATTCTCGTCGAGGTCTACCCTCCGCT GGCGGGGGCGGAAGCAAAATGCTGGACTGATAGAAACTTTTGAGGCCGTT TCCCAGACACTATTGGCTTTTTGCCTTAGCGGCCGCAGTTAGGAGGGAAC TGAAAGTGGTTTTCCGTCGGTGACAAGCGGGAAACTTACCCATATTATTT CCTTGGTCCCAGGGGGAGACCGTATTTATATGAAAAGTAGAAGTGGATGC GTTGAATCGATACCTACCGATTAGCCTATGTCTGTTAAAGAGCGGGAGGG TGGTGGTGGGGGTGAGAAAAGGAGTACTTAAAAAAAAATGCTTTTTAACG GGGGAAGGCTTTATGCGTGTCAAGCATATCATCTACGGGAGGTAGCTGTT TTTTAGGGTGGAAACACACATGCAGGCAACAGCAGCAGCCGCCGCAGTAG CGTGCTTGATGTCTGTTAAAGCATGACGTCATCTCCTGACTCCACCGCGC CGAGGCCAATGTTGCTGCGACGTAACGTCATCCGACCCCGATGATCCGGA ACCTGTCCTCCCTTACGCACGCGGTAGGAGACAACGCAAGATTTCGGCGA ACATGCAGGTGGTGATGTGGTTCGCGGGGCTGCGAGGCGCCATCGCCTTC GCGCTGTCGACGAGCATGCCGGGGGCCAGCAAGGACGTGTACGCGTCTAC GACCCTGATGGTGGTAATCTTTACGACGATCGGCTGTGGCGGCCTGACGG AGCCCCTCCTACACCGAATGAATGTCAAGACTCAGGTAAGT
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Coding sequence (CDS) from alignment at H-elongata_contig80578:1706..2796-

>mRNA_H-elongata_contig80578.15709.1 ID=mRNA_H-elongata_contig80578.15709.1|Name=mRNA_H-elongata_contig80578.15709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig80578:1706..2796- (Himanthalia elongata Himel1 dioecious)
ACGGCGGAGTATATCTTCGCCTCTCTGGCGACGCTCTCCGAGTTCGTGGT
TTTCCTATACATGGGGATGGGTGTTTTCACCGGGCGCTTCAGGGACTGGG
ACTGGCGCTTCATCGGCTTTGCTATTGTGTTCTGCCTCGTGGCGCGGCTG
TTCAACACGTTCCCCTTCAGCGCGCTTGCCAACCTCTGACGGCGGAGTAT
ATCTTCGCCTCTCTGGCGACGCTCTCCGAGTTCGTGGTTTTCCTATACAT
GGGGATGGGTGTTTTCACCGGGCGCTTCAGGGACTGGGACTGGCGCTTCA
TCGGCTTTGCTATTGTGTTCTGCCTCGTGGCGCGGCTGTTCAACACGTTC
CCCTTCAGCGCGCTTGCCAACCTCTGGAGACAACGCAAGATTTCGGCGAA
CATGCAGGTGGTGATGTGGTTCGCGGGGCTGCGAGGCGCCATCGCCTTCG
CGCTGTCGACGAGCATGCCGGGGGCCAGCAAGGACGTGTACGCGTCTACG
ACCCTGATGGTGGTAATCTTTACGACGATCGGCTGTGGCGGCCTGACGGA
GCCCCTCCTACACCGAATGAATGTCAAGACTCAGGTAAGTGAGACAACGC
AAGATTTCGGCGAACATGCAGGTGGTGATGTGGTTCGCGGGGCTGCGAGG
CGCCATCGCCTTCGCGCTGTCGACGAGCATGCCGGGGGCCAGCAAGGACG
TGTACGCGTCTACGACCCTGATGGTGGTAATCTTTACGACGATCGGCTGT
GGCGGCCTGACGGAGCCCCTCCTACACCGAATGAATGTCAAGACTCAGGT
AAGT
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