mRNA_H-elongata_contig80570.15707.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80570.15707.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 1.010e-146 Identity = 378/908 (41.63%), Postives = 459/908 (50.55%), Query Frame = 1
Query: 1 AVECFREETEHRSTVRQIPAFHTFTMVCQLASEAGIGGHPSPIEMLKEATLAPLKYFQAQDRPDRGSKGKGQAFRQRLEAFQGCIEISASIFSAIRRCPQLARDRDVLPAVIAGCCSENPIAARHAFAILADQANQSPHVVSQMLLSKAMLIPTTVGMLQAPSRLGASGEEPNLAYTLACVYYLRAIKALAFSEVLDDTMRLDMYRTMVSSVPYARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKLCVEEATAPAAAAAAAKTTAGKSSVKIDQRVSRCLRLE*PSARGAAPTEWVVHPWLR*RQSPEC-GAIGL--------WRMQRAGCAEWLAVRSRWRSAIRQRRAKTELLPTAEPLH*HQTHPPVLR*Q*HQRQQ*LGAVPPSPMTTPA-PARAPKSVSARKENLGTRTEKSPFPSRRT--RPPQAQRSTS--SGFPLRQRCGSRTPRRSGT-------CAECYSSIG--YWKALIFT------CAASP*RL*YVPLGARPFATRSAAPRPLGLVAAKGTAVPVHPPGLSAERAGGHAANAGPLQRG*PAGS-----------HPDRPLSHR*LRVSGAE*RNGVLLTPGVVPVCGLRRPGARGGAAVCL-----------PIARHEHRAAS*SSPPRRREPRQRRQDKPRPRPSERRLDTKAGSGVRSDVGF-----------GGRDRSHQCRRLEVRWLQRRFGHTRWRGGLALGQEWGCRGRLKGLGKGAVSQGEERRHEG*ALRLLVPGGILPPGDGIVYRKSQRRLPDPKPTQAT-NDLLDVWASVPPTRSASTVG------------SSAVAPPVVTAMKGATVSILLRLKHAAMFKDFQTRHTCASALCKIALRLPEPVRFDVYCFLKTLASSADVFPLVAPR 2499
A+ECFR+E+EHRS+VRQIPAFHT +CQLAS +G+GG PSP+E+L+E TL PL+ QAQ+RP+RG K KG+A RQR EAF+ +++SA+IFSAIRRCP LARD+ +LP V+ GCCSEN +AARHAFAILAD A +SP VVSQ LLSKAML+PTTVGMLQAP L ++G EPNLA +LACVYYLRAIKALAF+ LDDTMRLDMYRTMVSSV ARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIK+CVEEATAPA AAAAA S+ L P+ G G G+ W + A C V ++ AIR R K EL+ TA + LR Q + + A PP+ P+ PA A + V + R R P RS + + F L P+ G +C S++ L+ T C+A+ + P L L + VP G RA A G R S PD P R + A N T V G RGGAA + PI+ + + S P R P +G G GF GG + S R+G+ GG G + RLK L + + +R A L G G SQ P P + N+LLDVW S P+ + G +SA A PVV+ M GAT+SIL+RLKHAAMF+DFQTR TCASALCKIALRLP+P+RFD YCFL+ LA SA +FPLV R
Sbjct: 87 AIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGEPNLADSLACVYYLRAIKALAFAGALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASEAHCNWALAHAACRVCRVVGRTFQVAIRPCRTKIELVSTAAAAVAAPSWQARLRQQ-ASAESVVAAGPPARAPRPSTPATASRKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSAT--------------SREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNP------RTAFASAANDRASTGSV---------GDRGGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPP-----------------TIVSGGGSSGSSGFATSLNGVSMILGGDEAS-------------RWGNA---GGGGAGGDPSETPRLKYLRTKSAATRLKRS----AFWFL--GEYCCQLTGAPAESSQNPDQSPPPAETGGNELLDVWTSPVPSPTKGGTGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSR 925
BLAST of mRNA_H-elongata_contig80570.15707.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 456 bits (1173), Expect = 2.720e-141 Identity = 368/922 (39.91%), Postives = 449/922 (48.70%), Query Frame = 1
Query: 1 AVECFREETEHRSTVRQIPAFHTFTMVCQLASEAGIGGHPSPIEMLKEATLAPLKYFQAQDRPDRGSKGKGQAFRQRLEAFQGCIEISASIFSAIRRCPQLARDRDVLPAVIAGCCSENPIAARHAFAILADQANQSPHVVSQMLLSKAMLIPTTVGMLQAPSRLGASGEEPNLAYTLACVYYLRAIKALAFSEVLDDTMRLDMYRTMVSSVPYARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKLCVEEATAPAAAAAAAKTTAGKSSVKIDQRVSRCLRLE*PSARGAAPTEWVVHPWLR*RQSPECGAIGL--------WRMQRAGCAEWLAVRSRWRSAIRQRRAKTELLPTAEPLH*HQTHPPVLR*Q*HQRQQ*LGAVPPSPMTTPAPARAPKSVSARKENLGTRTEKSPFPSRRTRPPQAQRSTSSGFPLRQRCGSRTPRRSGTCAECYSSIGYWKALIFTCAASP*RL*YVPLGARPFATRSAAPRPLGLVAAKGTAVPVHPPGLSAERA---GGHAANAGPLQRG*PAGSHPDRPLSHR*LRVSGAE*RNGVLLTPGVVPV-----------------CGLRRPGARGGAAVCLPIARHEHRAAS*SSPPRRREPRQRRQDKPRPRPSERRLDTKAGSGVRSD-------------VGFGGRDRSHQCRRLEVRWLQRRF---------------------GHTRWRGGLA------LGQEWGCRGRLKGLGKGAVSQGEERRH---EG*ALRLLVP-----GGILPPGDGIVYRKSQRRLPDPKPTQAT-NDLLDVWASVPPTRSASTVG------------SSAVAPPVVTAMKGATVSILLRLKHAAMFKDFQTRHTCASALCKIALRLPEPVRFDVYCFLKTLASSADVFPLVAPR 2499
A+ECFR+E+EHRS+VRQIPAFHT +CQLAS +G+GG PSP+E+L+E TL PL+ QAQ+RP+RG K KG+A RQR EAF+ +++SA+IFSAIRRCP LARD+ +LP V+ GCCSEN +AARHAFAILAD A +SP VVSQ LLSKAML+PTTVGMLQAP L ASG EPNLA +LACVYYLRAIKALAF+E LDDTMRLDMYRTMVSSV ARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIK+CVEEATAPA AAAAA T A S + S A + + + G G+ W + A C V ++ AI +QT Q R G+ S +PA A SV + GT + P + A+ S G R GS+ ++ +G +P P + + AP G A R GG A + R R L L V LL P P+ C P V + R + A S + P L V S+ G+GGR R + + R L R G RGG A ++W + G +G S+ ++ + A RL G G SQ P P + N+LLDVW S P+ + +G +SA A PVV+ M GAT+SIL+RLKHAAMF+DFQTR TCASALCKIALRLP+P+RFD YCFL+ LA SA +FPLV R
Sbjct: 191 AIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAA-TAAHDGSTAASRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNGPAGVGASEAYCNWALAHAACRVCRVVGRTFQVAIS-----------------YQTM------QNQNRAGVDGSSGGSSTVLASPA-ATSSVGGERRGSGTSGPRPPSVN-------ARHGFSEGLLASGRDGSQPVTPEVGTGSAFNLLG------------------LPPSPAPRSGITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAI-RDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATS----------------REEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSV-YRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQGDPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAESSQNHDQTPPPAKTGGNELLDVWTSPVPSPTKGGMGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSR 1044
BLAST of mRNA_H-elongata_contig80570.15707.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.280e-24 Identity = 94/283 (33.22%), Postives = 122/283 (43.11%), Query Frame = 1
Query: 205 GKGQAFRQRLEAFQGCIEISASIFSAIRRCPQLARDRDVLPAVIAGCCSENPIAARHAFAILADQANQSPH-----------------------------VVSQMLLSKAML-----------------IPTTVGMLQAPSRLGASG-----EEPNLAYTLACVYYLRAIKALAFSEVLDDTMRLDMYRTMVSSVPYARHRVALEA------------------------------------MQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKLCVEEA 792
G +A R E + + +S + SA+RR L R +LP V+ C S N + ARHAFA+L +QA VS +L + V L P+ + A+G +PNL LACVYYLR +K L F+ L+ RLD YRT+ +SV RHRVALEA MQCL+DH RAW LLV+AQRESRDAD+FRRVVD ++ C+ A
Sbjct: 387 GGRKAHRGEAEVKEHLL-LSRVVLSAVRRSAALRRRASLLPRVLEACRSPNAVTARHAFAVLLEQAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSMVLAEXXXXXXXXXXXXXXXAMDPKAVAEGVYPLLQPTTVAAAGALEIHNQPNLEDPLACVYYLRVLKTLVFAPELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHERAWTLLVDAQRESRDADLFRRVVDALRRCLAAA 668 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80570.15707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80570.15707.1 >prot_H-elongata_contig80570.15707.1 ID=prot_H-elongata_contig80570.15707.1|Name=mRNA_H-elongata_contig80570.15707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp MVCQLASEAGIGGHPSPIEMLKEATLAPLKYFQAQDRPDRGSKGKGQAFRback to top mRNA from alignment at H-elongata_contig80570:298..2886- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80570.15707.1 ID=mRNA_H-elongata_contig80570.15707.1|Name=mRNA_H-elongata_contig80570.15707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2589bp|location=Sequence derived from alignment at H-elongata_contig80570:298..2886- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80570:298..2886- >mRNA_H-elongata_contig80570.15707.1 ID=mRNA_H-elongata_contig80570.15707.1|Name=mRNA_H-elongata_contig80570.15707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig80570:298..2886- (Himanthalia elongata Himel1 dioecious)back to top |