mRNA_H-elongata_contig8053.15704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8053.15704.1
Unique NamemRNA_H-elongata_contig8053.15704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.860e-22
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGARPTIKPN 201
            GWEESVDAA+THLLRTSLAKVAKD  P S     PL+MP DT KLKKH+SIVFDRLNKGAR  + P+
Sbjct: 1043 GWEESVDAAVTHLLRTSLAKVAKDAAPPSAGQTPPLSMPADTVKLKKHLSIVFDRLNKGARLVVLPS 1109
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: D8LTW5_ECTSI (Bardet-Biedl syndrome 9, parathyroid hormone-responsive B1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.630e-21
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGARPTIKPN 201
            GWEESV AA+THLLRTSLAKVAKD  P S     PL+MP DT KLKKH+SIVFDRLNKGAR  + P+
Sbjct:  967 GWEESVHAAVTHLLRTSLAKVAKDAAPPSAGQTPPLSMPADTVKLKKHLSIVFDRLNKGARLVVLPS 1033
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A7S2FQC3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQC3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.400e-18
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGARPTIKPN 201
            GWEE+ DAA+THLL+TSLAK AKD    S     PL MP+DT++LKKHI IV DRL KGA  T KP+
Sbjct:   71 GWEETTDAALTHLLKTSLAKTAKD----SVIVHQPLVMPKDTSRLKKHIQIVCDRLKKGASLTGKPS 133
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A8J1TWF3_OWEFU (Ofus.G061491 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TWF3_OWEFU)

HSP 1 Score: 80.9 bits (198), Expect = 3.090e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GWEE VD ++THLLRT LAK +KD     T   APLTMP+DT K+KKH++++FDRL KGAR
Sbjct:  769 GWEEIVDTSITHLLRTCLAKSSKDQ----TINPAPLTMPKDTTKIKKHVALLFDRLGKGAR 825
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A210QS47_MIZYE (Protein PTHB1 n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210QS47_MIZYE)

HSP 1 Score: 79.7 bits (195), Expect = 7.870e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GWEESVDA++THLLRT+LAK AKD     T    PL MPEDT K+KKHI+++ D+L KGAR
Sbjct:  765 GWEESVDASVTHLLRTTLAKSAKDQ----TLNPQPLQMPEDTTKVKKHIALMCDKLGKGAR 821
[Close]
BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A1S3HPP0_LINUN (protein PTHB1-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HPP0_LINUN)

HSP 1 Score: 78.6 bits (192), Expect = 2.010e-15
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GWEE VDAA+THLLRT LAK AKD     T   +PLTMP DT+KL+KHI ++ DRL+KGA+
Sbjct:  765 GWEECVDAAITHLLRTCLAKNAKDQ----TVNPSPLTMPRDTSKLRKHIGMLCDRLSKGAK 821
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BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A6J8B200_MYTCO (BBS9 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B200_MYTCO)

HSP 1 Score: 78.2 bits (191), Expect = 2.690e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GW ESVDAA+TH+LRT+LAK AKD     T    PL MPEDT K+KKH++++ D+L KGAR
Sbjct:  373 GWVESVDAAVTHVLRTTLAKAAKDQ----TLNPQPLQMPEDTTKVKKHVALMIDKLGKGAR 429
[Close]
BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A8B6H0Y5_MYTGA (Bardet-Biedl syndrome 9 protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H0Y5_MYTGA)

HSP 1 Score: 78.2 bits (191), Expect = 2.740e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GW ESVDAA+TH+LRT+LAK AKD     T    PL MPEDT K+KKH++++ D+L KGAR
Sbjct:  764 GWVESVDAAVTHVLRTTLAKAAKDQ----TLNPQPLQMPEDTTKVKKHVALMIDKLGKGAR 820
[Close]
BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: UPI001E1DB212 (protein PTHB1-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB212)

HSP 1 Score: 78.2 bits (191), Expect = 2.740e-15
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGAR 183
            GWEE+VDA++THLLRT+LAK AKD     T    PL +PEDT+K+KKHI+++ D+L+KGAR
Sbjct:  771 GWEETVDASVTHLLRTTLAKSAKDQ----TLNPQPLKLPEDTSKVKKHIALLCDKLSKGAR 827
[Close]
BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Match: A0A444U437_ACIRT (Protein PTHB1 (Fragment) n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U437_ACIRT)

HSP 1 Score: 75.5 bits (184), Expect = 4.950e-15
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 GWEESVDAAMTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKGARPTI 192
            GWEESVDAA+THLLRT L+K  KD     T   + LTMP+DT+KLKKHI+++ DR+ KG R T+
Sbjct:  147 GWEESVDAAVTHLLRTCLSKSPKDQALNLT---SHLTMPKDTSKLKKHITLLCDRIGKGGRLTL 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8053.15704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J4_9PHAE1.860e-2273.13Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW5_ECTSI1.630e-2171.64Bardet-Biedl syndrome 9, parathyroid hormone-respo... [more]
A0A7S2FQC3_9STRA4.400e-1862.69Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J1TWF3_OWEFU3.090e-1662.30Ofus.G061491 protein n=2 Tax=Owenia fusiformis Tax... [more]
A0A210QS47_MIZYE7.870e-1663.93Protein PTHB1 n=4 Tax=Pectinidae TaxID=6566 RepID=... [more]
A0A1S3HPP0_LINUN2.010e-1563.93protein PTHB1-like isoform X1 n=1 Tax=Lingula ungu... [more]
A0A6J8B200_MYTCO2.690e-1560.66BBS9 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
A0A8B6H0Y5_MYTGA2.740e-1560.66Bardet-Biedl syndrome 9 protein n=1 Tax=Mytilus ga... [more]
UPI001E1DB2122.740e-1560.66protein PTHB1-like isoform X1 n=2 Tax=Mercenaria m... [more]
A0A444U437_ACIRT4.950e-1559.38Protein PTHB1 (Fragment) n=1 Tax=Acipenser ruthenu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8053contigH-elongata_contig8053:6072..6275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue5e-13
Seed eggNOG ortholog2880.D8LTW5
Preferred nameBBS9
KEGG koko:K19398
GOsGO:0000242,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031090,GO:0031253,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035869,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045444,GO:0048869,GO:0051179,GO:0051641,GO:0060170,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0098588,GO:0098590,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cell projection organization
EggNOG OGsKOG3679@1,KOG3679@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size204
Cds size177
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.8290086-UTR-H-elongata_contig8053:6071..60981622931210.8290086-UTR-H-elongata_contig8053:6071..6098Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8053 6072..6098 +
1691679743.1443987-UTR-H-elongata_contig8053:6071..60981691679743.1443987-UTR-H-elongata_contig8053:6071..6098Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8053 6072..6098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.8480518-CDS-H-elongata_contig8053:6098..62751622931210.8480518-CDS-H-elongata_contig8053:6098..6275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8053 6099..6275 +
1691679743.1548123-CDS-H-elongata_contig8053:6098..62751691679743.1548123-CDS-H-elongata_contig8053:6098..6275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8053 6099..6275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8053.15704.1prot_H-elongata_contig8053.15704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8053 6099..6275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8053.15704.1

>prot_H-elongata_contig8053.15704.1 ID=prot_H-elongata_contig8053.15704.1|Name=mRNA_H-elongata_contig8053.15704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MTHLLRTSLAKVAKDYIPGSTFGQAPLTMPEDTNKLKKHISIVFDRLNKG
ARPTIKPNI
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mRNA from alignment at H-elongata_contig8053:6072..6275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8053.15704.1 ID=mRNA_H-elongata_contig8053.15704.1|Name=mRNA_H-elongata_contig8053.15704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig8053:6072..6275+ (Himanthalia elongata Himel1 dioecious)
GGCTGGGAAGAGAGCGTTGACGCGGCAATGACTCATCTATTACGCACTTC
GCTCGCCAAGGTTGCCAAAGATTACATTCCTGGAAGTACTTTCGGGCAAG
CACCCCTAACTATGCCCGAGGACACCAACAAGCTAAAGAAGCACATTTCG
ATCGTCTTCGACCGACTTAACAAGGGCGCTCGGCCTACCATTAAGCCAAA
CATT
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Coding sequence (CDS) from alignment at H-elongata_contig8053:6072..6275+

>mRNA_H-elongata_contig8053.15704.1 ID=mRNA_H-elongata_contig8053.15704.1|Name=mRNA_H-elongata_contig8053.15704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig8053:6072..6275+ (Himanthalia elongata Himel1 dioecious)
ATGACTCATCTATTACGCACTTCGCTCGCCAAGGTTGCCAAAGATTACAT
TCCTGGAAGTACTTTCGGGCAAGCACCCCTAACTATGCCCGAGGACACCA
ACAAGCTAAAGAAGCACATTTCGATCGTCTTCGACCGACTTAACAAGGGC
GCTCGGCCTACCATTAAGCCAAACATTATGACTCATCTATTACGCACTTC
GCTCGCCAAGGTTGCCAAAGATTACATTCCTGGAAGTACTTTCGGGCAAG
CACCCCTAACTATGCCCGAGGACACCAACAAGCTAAAGAAGCACATTTCG
ATCGTCTTCGACCGACTTAACAAGGGCGCTCGGCCTACCATTAAGCCAAA
CATT
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