mRNA_H-elongata_contig8052.15701.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 229 bits (583), Expect = 1.360e-68 Identity = 124/304 (40.79%), Postives = 173/304 (56.91%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYF------DYLSPPTPDRPT---------DAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGE-KNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
+QK GG+TV +L+ + +YD+ WK GD + + + G TW V+ G EA+RR + D C++FT+FRHPI+R+VSAYF+C+ D CASE++ A+D DLL FA+HWGN+ VRQFA FV +D V HD ++ WY LK+Y D+ P + T +A LYD+L D IR Y VGILE WNTTL++ + L +PG+ W + G DY+ ++ L+ AWT +ELK ++RLDLLLYEHA DVF++QAR Y +L
Sbjct: 162 LQKCGGSTVKYMLRRSYGSRYS--IYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRV--DYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.280e-66 Identity = 120/298 (40.27%), Postives = 167/298 (56.04%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRF------DHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAAD---DVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDR-PTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNILQ 864
+QKAGGTTV +L W E T YD+ WKKG + + W G +EA+RR D C+WFTVFRHP+SRLVSAY++C+ P D+LCASE +S+R+ DL+ FARHWGN+ +RQFA FV+ D D L + + G + WY+LK++ + S D P L M + D +RD Y VVGILE+WN TL++ ++ L MPG+ W++ + G +N + ++ GEK L+ A + E+ + LDL LY A D+FNQQ Y I Q
Sbjct: 94 LQKAGGTTVKRLLFDSWGSESTT--YDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFK-GEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 218 bits (554), Expect = 2.810e-64 Identity = 120/293 (40.96%), Postives = 168/293 (57.34%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGT-----VNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
+QK GG+TV +L+ +W +YD+ WK GD + K+ + G W V+ G EA+R + C++FT+FRHPI+R+VSAYF+C+ D CASE+M A+D DLL FA+HWGN+ +RQFA FV +DDV L P + + + D + TPD P LY++L D +RD Y VGILE WNTTL + + L MP ++W++ + G VN + E L+ AWT +ELK ++RLDLLLYEHA DVF+QQAR + +L
Sbjct: 183 LQKCGGSTVKDLLEDRWGSRFF--IYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQEYQLKMYLERPQKEDGGVLGQREAMTAHQDAAA--TPDAP----LYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIE------TLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 187 bits (474), Expect = 4.000e-54 Identity = 114/308 (37.01%), Postives = 166/308 (53.90%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWH--HEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHAD--RCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSAR--DTDLLGFARHWGNYGVRQFAFAFVAADDVLA---AFSNGTLSFPHDVPWTSVSDWYLLKVYF----DYLSPPTPDRPTD---------AALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
M KAGG+TV +L W V +YD+ W +G + + Q+F+ G ++ G+ E +R F CKWFT+FRHPI RLVSAYF+CK++P D LCA+ + A DTDL FA HWG++G+RQFA AFV +++LA + + P+ S WY LK+Y D R D A + +L +Q+ + ++Y VG+LE W T+L + N LGMPG DW + + S+G N++ + E L +WT L+ ++ LDLLLY++A V NQQ Y +
Sbjct: 1 MNKAGGSTVKYMLA-PWTKAQNVTVGLYDSPQWLEG----KDFAQDFL-GDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGK-RSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLR-SWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 187 bits (476), Expect = 5.650e-54 Identity = 110/292 (37.67%), Postives = 153/292 (52.40%), Query Frame = 1
Query: 1 MQKAGGTTVNT-ILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLS-FPHDVPW---TSVSDWYLLKVYF------DYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQA 843
M K+GG TV I+ V T ++D +W G + + +V+E G E +R +D D CKWFTVFRHP+SR+VSAYF+C+R D+LCA+ ++ A DLL FA HWGNYG+RQFA A + A+DV F N +S F + WY K Y D+ P P+ + L L Q+T+ +Y VGI+E W+ ++ + N L + DW K ++ G N+ E +AL+ AW S ELK FI LD+LLY+HA V Q
Sbjct: 58 MNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAV-----FTYGGYTEGLRMYDDRD-CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDV---FHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPE----SGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQV 336
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 148 bits (374), Expect = 4.470e-40 Identity = 83/219 (37.90%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 229 FRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRP--------TDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
++ PI RLVSAYF+CK+ D+LCAS ++ A +TDL FA+HWGNYG+RQF+ AFV A+DV AA + D WY +K YF+ +R D A+ +L ++D + Y+ VGILE W T++ + N L +P +WQ A R++G N ++ + E +A L AW L + LD+ LY+HA V N+Q + I+
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGI----DGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHA-LRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 4.430e-39 Identity = 95/299 (31.77%), Postives = 143/299 (47.83%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDV--YDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALY-----------DMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
M KAGGT++ ++K + T V + + GD Q+ + + ++ G+ E +R + CKWFT+ RHPI+RLVSA+ +C P D+LCA+ I D D+ FA HWGN+GV QFA AF +D+L V WY K+YF+ P+ T A + ++L +++ +R +Y VGILE W T++ + + L +PG +W S N ++ KN L + T LK + LD+LLYEHA V Q Y +
Sbjct: 43 MNKAGGTSIRRMIKD-YAAATNTTVGEFTHTQYNAGDRGVQQILDRRPS-----LIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDIL-------------VTEVKSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKA---KNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.810e-37 Identity = 96/299 (32.11%), Postives = 145/299 (48.49%), Query Frame = 1
Query: 7 KAGGTTVNTILKHKWHHEVGTDVYDTRDW-KKGDAQTQKYVQE---FVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFD-YLSPP----------TPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
KAGGTTV T L++ T DW +GD Q + + +AG + +R S+ + CKWFT+ RHPI+RL+SA+++C D+LCA+ I D D+ FA+HWGNY + QFA V ++ A D P W+ K+YF+ L P T D + D+L +++ +R Y VGILE+W ++ + + L +PG +W A S+ + E K A L A T L+ ++ LDLLLYE+A + +Q R Y++
Sbjct: 45 KAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQG---------CKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFAE--------EVDAP-----AWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIVE--KKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 144 bits (364), Expect = 5.960e-36 Identity = 94/290 (32.41%), Postives = 142/290 (48.97%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGT---VNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
M K+G + + +W + V+DT W++GD + + +A H WK++ G VE++R +H +R CKW T+FRHPI+RL+SAY C P D +C T L+ FA WGN+ +RQFA V+ V + T S WYL+K +YL+ D L ML ++ + QY VGI + TT+ + + L M GLDW ++ ++G V + +Y+ E A + + S +RLD+ LYEHA VF Q + I
Sbjct: 279 MDKSGASGARRVATERWRKDEL--VFDTVQWRRGDG----FAADVMASH-WKLLHGGCVESLR--NHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQAR-------TGTSMWYLVK---EYLA--RGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEP-FRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.210e-35 Identity = 94/291 (32.30%), Postives = 142/291 (48.80%), Query Frame = 1
Query: 1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGE----KNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
M K+G + + +W + V+DT W++GD + + +A WK++ G VE++R +H R CKW T+FRHPI+RL+SAY C P D +C T L FA WGN+ +RQFA A V+ V + T S WYL+K +YL+ D L L ++ + QY VGI + TT+ + + L M GLDW ++ ++G +N ED ++ E ++ A + + S +RLD+ LYEHA VF Q + I
Sbjct: 1 MDKSGASGARRVATEQWRKDEL--VFDTVQWRRGDG----FAADVMASR-WKLLHGGCVESLR--NHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQAR-------TGTSMWYLVK---EYLA--RGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLG-IN-EEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8052.15701.1 >prot_H-elongata_contig8052.15701.1 ID=prot_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTback to top mRNA from alignment at H-elongata_contig8052:8495..9361+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8052.15701.1 ID=mRNA_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig8052:8495..9361+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8052:8495..9361+ >mRNA_H-elongata_contig8052.15701.1 ID=mRNA_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig8052:8495..9361+ (Himanthalia elongata Himel1 dioecious)back to top |